RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 Q6ZUT4 128 aa10.02□□□□□ -0.81
LIMS3-206ENST00000631420 CDC42SE2Q9NRR3 84 aa10.02□□□□□ -0.81
LIMS3-206ENST00000631420 SPANXA1Q9NS26 97 aa10.02□□□□□ -0.81
LIMS3-206ENST00000631420 IGLV4-3A0A075B6K6 122 aa10.01□□□□□ -0.81
LIMS3-206ENST00000631420 ZNF25P17030 456 aaPredicted RBP10.01□□□□□ -0.81
LIMS3-206ENST00000631420 LINC01556Q5JQF7 62 aa10.01□□□□□ -0.81
LIMS3-206ENST00000631420 OR5A1Q8NGJ0 315 aa10.01□□□□□ -0.81
LIMS3-206ENST00000631420 TMEM101Q96IK0 257 aa10.01□□□□□ -0.81
LIMS3-206ENST00000631420 CSDC2Q9Y534 153 aaKnown RBP10.01□□□□□ -0.81
LIMS3-206ENST00000631420 LY6G6CO95867 125 aa10.01□□□□□ -0.81
LIMS3-206ENST00000631420 ZNF664Q8N3J9 261 aa10.01□□□□□ -0.81
LIMS3-206ENST00000631420 TIMM17AQ99595 171 aa10.01□□□□□ -0.81
LIMS3-206ENST00000631420 KLK12Q9UKR0 248 aa10.01□□□□□ -0.81
LIMS3-206ENST00000631420 LINC01549A6NIU2 74 aa10□□□□□ -0.81
LIMS3-206ENST00000631420 ANGP03950 147 aaKnown RBP10□□□□□ -0.81
LIMS3-206ENST00000631420 S100A2P29034 98 aa10□□□□□ -0.81
LIMS3-206ENST00000631420 PKIAP61925 76 aa10□□□□□ -0.81
LIMS3-206ENST00000631420 TMEM141Q96I45 108 aa10□□□□□ -0.81
LIMS3-206ENST00000631420 HIST1H2BLQ99880 126 aa10□□□□□ -0.81
LIMS3-206ENST00000631420 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.99□□□□□ -0.81
LIMS3-206ENST00000631420 ATP5LO75964 103 aa9.99□□□□□ -0.81
LIMS3-206ENST00000631420 MRPS36P82909 103 aaKnown RBP9.99□□□□□ -0.81
LIMS3-206ENST00000631420 SMAGPQ0VAQ4 97 aa9.99□□□□□ -0.81
LIMS3-206ENST00000631420 CLPSL2Q6UWE3 100 aa9.99□□□□□ -0.81
LIMS3-206ENST00000631420 LINC00269Q8N2A0 174 aa9.99□□□□□ -0.81
LIMS3-206ENST00000631420 LINC00476Q8WZB0 136 aa9.99□□□□□ -0.81
LIMS3-206ENST00000631420 IFI27L1Q96BM0 104 aa9.99□□□□□ -0.81
LIMS3-206ENST00000631420 ALMS1Q8TCU4 4167 aa9.99□□□□□ -0.81
LIMS3-206ENST00000631420 IGKV3OR2-268A0A0C4DH90 116 aa9.98□□□□□ -0.81
LIMS3-206ENST00000631420 BAALCQ8WXS3 180 aa9.98□□□□□ -0.81
LIMS3-206ENST00000631420 HSPB8Q9UJY1 196 aa9.98□□□□□ -0.81
LIMS3-206ENST00000631420 PACRGQ96M98 296 aaPredicted RBP9.97□□□□□ -0.81
LIMS3-206ENST00000631420 AMELXQ99217 191 aa9.97□□□□□ -0.81
LIMS3-206ENST00000631420 KRTAP1-5Q9BYS1 174 aa9.97□□□□□ -0.81
LIMS3-206ENST00000631420 VCX2Q9H322 139 aa9.97□□□□□ -0.81
LIMS3-206ENST00000631420 PRSS29PA6NIE9 313 aa9.97□□□□□ -0.81
LIMS3-206ENST00000631420 PRSS1P07477 247 aa9.97□□□□□ -0.81
LIMS3-206ENST00000631420 ENHOQ6UWT2 76 aa9.97□□□□□ -0.81
LIMS3-206ENST00000631420 Q6ZN92 141 aa9.97□□□□□ -0.81
LIMS3-206ENST00000631420 SACSQ9NZJ4 4579 aa9.96□□□□□ -0.82
LIMS3-206ENST00000631420 NPSP0C0P6 89 aa9.96□□□□□ -0.82
LIMS3-206ENST00000631420 UBE2WQ96B02 151 aa9.96□□□□□ -0.82
LIMS3-206ENST00000631420 H0Y8G0 127 aa9.95□□□□□ -0.82
LIMS3-206ENST00000631420 M0R2N4 97 aa9.95□□□□□ -0.82
LIMS3-206ENST00000631420 REG3AQ06141 175 aa9.95□□□□□ -0.82
LIMS3-206ENST00000631420 TEX43Q6ZNM6 134 aa9.95□□□□□ -0.82
LIMS3-206ENST00000631420 CST9LQ9H4G1 147 aa9.95□□□□□ -0.82
LIMS3-206ENST00000631420 PRR34Q9NV39 138 aa9.95□□□□□ -0.82
LIMS3-206ENST00000631420 TRAV13-1A0A0B4J241 112 aa9.94□□□□□ -0.82
LIMS3-206ENST00000631420 IBA57-AS1B1ANH7 110 aa9.94□□□□□ -0.82
LIMS3-206ENST00000631420 C3orf79P0CE67 100 aa9.94□□□□□ -0.82
LIMS3-206ENST00000631420 PMVKQ15126 192 aa9.94□□□□□ -0.82
LIMS3-206ENST00000631420 MAP1LC3CQ9BXW4 147 aa9.94□□□□□ -0.82
LIMS3-206ENST00000631420 TRAV9-2A0A087WT02 112 aa9.93□□□□□ -0.82
LIMS3-206ENST00000631420 NBDYA0A0U1RRE5 68 aa9.93□□□□□ -0.82
LIMS3-206ENST00000631420 KRTDAPP60985 99 aa9.93□□□□□ -0.82
LIMS3-206ENST00000631420 PAPPA-AS1Q5QFB9 102 aa9.93□□□□□ -0.82
LIMS3-206ENST00000631420 SPATA12Q7Z6I5 190 aa9.93□□□□□ -0.82
LIMS3-206ENST00000631420 KMT2AQ03164 3969 aa9.93□□□□□ -0.82
LIMS3-206ENST00000631420 HYDINQ4G0P3 5121 aa9.93□□□□□ -0.82
LIMS3-206ENST00000631420 LINC00959A0A1B0GUT2 108 aa9.92□□□□□ -0.82
LIMS3-206ENST00000631420 SYS1-DBNDD2H3BUS1 97 aa9.92□□□□□ -0.82
LIMS3-206ENST00000631420 OR10D4PQ8NGN7 298 aa9.92□□□□□ -0.82
LIMS3-206ENST00000631420 IGLV10-54A0A075B6I4 117 aa9.92□□□□□ -0.82
LIMS3-206ENST00000631420 CRPP02741 224 aa9.92□□□□□ -0.82
LIMS3-206ENST00000631420 UBE2D1P51668 147 aa9.92□□□□□ -0.82
LIMS3-206ENST00000631420 C10orf126Q8N4M7 172 aa9.92□□□□□ -0.82
LIMS3-206ENST00000631420 Q9HAA7 133 aa9.92□□□□□ -0.82
LIMS3-206ENST00000631420 PMCHL2Q9BQD1 86 aa9.91□□□□□ -0.82
LIMS3-206ENST00000631420 C2orf88Q9BSF0 95 aa9.91□□□□□ -0.82
LIMS3-206ENST00000631420 TRAV12-1A0A0B4J245 112 aa9.9□□□□□ -0.82
LIMS3-206ENST00000631420 A0A0J9YXV3 536 aa9.9□□□□□ -0.82
LIMS3-206ENST00000631420 K7EP13 123 aa9.9□□□□□ -0.82
LIMS3-206ENST00000631420 COX6A2Q02221 97 aa9.89□□□□□ -0.83
LIMS3-206ENST00000631420 ODF1Q14990 250 aa9.89□□□□□ -0.83
LIMS3-206ENST00000631420 LINC00242Q5T6M2 205 aa9.89□□□□□ -0.83
LIMS3-206ENST00000631420 Q6ZR54 194 aa9.89□□□□□ -0.83
LIMS3-206ENST00000631420 MRPL35Q9NZE8 188 aaKnown RBP9.89□□□□□ -0.83
LIMS3-206ENST00000631420 CHTOPQ9Y3Y2 248 aaKnown RBP9.89□□□□□ -0.83
LIMS3-206ENST00000631420 DNAH6Q9C0G6 4158 aa9.89□□□□□ -0.83
LIMS3-206ENST00000631420 IGLV4-69A0A075B6H9 119 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 LCE6AA0A183 80 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 CCL25O15444 150 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 SS18Q15532 418 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 MIAQ16674 131 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 TTC32Q5I0X7 151 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 PET117Q6UWS5 81 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 CHCHD10Q8WYQ3 142 aaPredicted RBP9.88□□□□□ -0.83
LIMS3-206ENST00000631420 DNAH10Q8IVF4 4471 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 TRAV8-3A0A0A6YYJ7 113 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 XCL1P47992 114 aa9.88□□□□□ -0.83
LIMS3-206ENST00000631420 DNAH2Q9P225 4427 aa9.87□□□□□ -0.83
LIMS3-206ENST00000631420 IGKV2D-24A0A075B6R9 120 aa9.87□□□□□ -0.83
LIMS3-206ENST00000631420 TRAV8-4A0A0B4J246 113 aa9.87□□□□□ -0.83
LIMS3-206ENST00000631420 KRTAP26-1Q6PEX3 210 aa9.87□□□□□ -0.83
LIMS3-206ENST00000631420 KMT2CQ8NEZ4 4911 aaKnown RBP9.86□□□□□ -0.83
LIMS3-206ENST00000631420 GAGE12HA6NDE8 117 aa9.86□□□□□ -0.83
LIMS3-206ENST00000631420 F8VRH5 84 aa9.86□□□□□ -0.83
LIMS3-206ENST00000631420 LINC01545Q5VT33 79 aa9.86□□□□□ -0.83
LIMS3-206ENST00000631420 FAM19A3Q7Z5A8 133 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms