RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 ATXN8Q156A1 80 aa10.18□□□□□ -0.78
COL6A1-207ENST00000612273 VSIG2Q96IQ7 327 aa10.18□□□□□ -0.78
COL6A1-207ENST00000612273 GAGE12JA6NER3 117 aa10.18□□□□□ -0.78
COL6A1-207ENST00000612273 PLA2G2AP14555 144 aa10.18□□□□□ -0.78
COL6A1-207ENST00000612273 RPL13AP40429 203 aaKnown RBP10.18□□□□□ -0.78
COL6A1-207ENST00000612273 GAGE4Q13068 117 aa10.18□□□□□ -0.78
COL6A1-207ENST00000612273 GAGE5Q13069 117 aa10.18□□□□□ -0.78
COL6A1-207ENST00000612273 RNF183Q96D59 192 aa10.18□□□□□ -0.78
COL6A1-207ENST00000612273 LITAFQ99732 161 aa10.17□□□□□ -0.78
COL6A1-207ENST00000612273 Q9H8V8 135 aa10.17□□□□□ -0.78
COL6A1-207ENST00000612273 SCGB1A1P11684 91 aa10.17□□□□□ -0.78
COL6A1-207ENST00000612273 WFDC10AQ9H1F0 79 aa10.17□□□□□ -0.78
COL6A1-207ENST00000612273 ICOSQ9Y6W8 199 aa10.17□□□□□ -0.78
COL6A1-207ENST00000612273 Q6YL49 198 aa10.17□□□□□ -0.78
COL6A1-207ENST00000612273 TRAV4A0A0B4J268 109 aa10.16□□□□□ -0.78
COL6A1-207ENST00000612273 A0A0B4J2C4 111 aa10.16□□□□□ -0.78
COL6A1-207ENST00000612273 MEIG1Q5JSS6 88 aa10.16□□□□□ -0.78
COL6A1-207ENST00000612273 Q6ZTI0 123 aa10.16□□□□□ -0.78
COL6A1-207ENST00000612273 TMEM89A2RUT3 159 aa10.15□□□□□ -0.78
COL6A1-207ENST00000612273 STHQ8IWL8 128 aa10.15□□□□□ -0.78
COL6A1-207ENST00000612273 ANAPC13Q9BS18 74 aa10.15□□□□□ -0.78
COL6A1-207ENST00000612273 IGHV4-31P0DP07 118 aa10.15□□□□□ -0.78
COL6A1-207ENST00000612273 TTC32Q5I0X7 151 aa10.15□□□□□ -0.78
COL6A1-207ENST00000612273 Q96MF0 132 aa10.15□□□□□ -0.78
COL6A1-207ENST00000612273 HIST2H2BCQ6DN03 193 aa10.15□□□□□ -0.79
COL6A1-207ENST00000612273 TEX29Q8N6K0 151 aa10.15□□□□□ -0.79
COL6A1-207ENST00000612273 TMEM101Q96IK0 257 aa10.15□□□□□ -0.79
COL6A1-207ENST00000612273 TOMM7Q9P0U1 55 aa10.15□□□□□ -0.79
COL6A1-207ENST00000612273 ITPR2Q14571 2701 aa10.14□□□□□ -0.79
COL6A1-207ENST00000612273 SNCGO76070 127 aa10.14□□□□□ -0.79
COL6A1-207ENST00000612273 INSP01308 110 aa10.14□□□□□ -0.79
COL6A1-207ENST00000612273 COX6CP09669 75 aa10.14□□□□□ -0.79
COL6A1-207ENST00000612273 RPL35AP18077 110 aaKnown RBP10.14□□□□□ -0.79
COL6A1-207ENST00000612273 PEMTQ9UBM1 199 aa10.13□□□□□ -0.79
COL6A1-207ENST00000612273 PYGO1Q9Y3Y4 419 aa10.13□□□□□ -0.79
COL6A1-207ENST00000612273 MIAQ16674 131 aa10.13□□□□□ -0.79
COL6A1-207ENST00000612273 DEFB114Q30KQ6 69 aa10.13□□□□□ -0.79
COL6A1-207ENST00000612273 ZFAND6Q6FIF0 208 aa10.13□□□□□ -0.79
COL6A1-207ENST00000612273 NOP10Q9NPE3 64 aaKnown RBP10.13□□□□□ -0.79
COL6A1-207ENST00000612273 C11orf72Q8NBR9 251 aa10.13□□□□□ -0.79
COL6A1-207ENST00000612273 NBPF19A0A087WUL8 3843 aa10.12□□□□□ -0.79
COL6A1-207ENST00000612273 TRAV8-4A0A0B4J246 113 aa10.12□□□□□ -0.79
COL6A1-207ENST00000612273 LOC100131303A0A0U1RQF7 123 aa10.12□□□□□ -0.79
COL6A1-207ENST00000612273 PRIMA1Q86XR5 153 aa10.12□□□□□ -0.79
COL6A1-207ENST00000612273 TINCRA0A1B0GVN0 87 aa10.12□□□□□ -0.79
COL6A1-207ENST00000612273 H7C423 109 aa10.12□□□□□ -0.79
COL6A1-207ENST00000612273 ODF3L2Q3SX64 289 aa10.12□□□□□ -0.79
COL6A1-207ENST00000612273 UBE2WQ96B02 151 aa10.12□□□□□ -0.79
COL6A1-207ENST00000612273 A0A096LNT2 108 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 DSCR9P59020 149 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 SBSPONQ8IVN8 264 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 GAGE2BQ13066 116 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 GAGE2EQ4V326 116 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 PIK3CD-AS1Q5SR53 167 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 SPANXA1Q9NS26 97 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 GAGE2DQ9UEU5 116 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 GAGE7O76087 117 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 GAGE12FP0CL80 117 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 GAGE12GP0CL81 117 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 GAGE12IP0CL82 117 aa10.11□□□□□ -0.79
COL6A1-207ENST00000612273 BBC3Q96PG8 261 aaPredicted RBP10.11□□□□□ -0.79
COL6A1-207ENST00000612273 TRBV10-2A0A0K0K1G8 114 aa10.1□□□□□ -0.79
COL6A1-207ENST00000612273 C15orf53Q8NAA6 179 aa10.1□□□□□ -0.79
COL6A1-207ENST00000612273 Q8N2B8 174 aa10.1□□□□□ -0.79
COL6A1-207ENST00000612273 C11orf68Q9H3H3 251 aaKnown RBP10.1□□□□□ -0.79
COL6A1-207ENST00000612273 TRGV2A0A075B6R0 118 aa10.09□□□□□ -0.79
COL6A1-207ENST00000612273 TMEM262E9PQX1 116 aa10.09□□□□□ -0.79
COL6A1-207ENST00000612273 LINC00242Q5T6M2 205 aa10.09□□□□□ -0.79
COL6A1-207ENST00000612273 C1orf158Q8N1D5 194 aa10.09□□□□□ -0.79
COL6A1-207ENST00000612273 TRBV30A0A0K0K1B3 111 aa10.09□□□□□ -0.79
COL6A1-207ENST00000612273 CIRBPQ14011 172 aaKnown RBP10.09□□□□□ -0.79
COL6A1-207ENST00000612273 B5MCH6 92 aa10.08□□□□□ -0.8
COL6A1-207ENST00000612273 NTM-AS1Q6ZSK4 140 aa10.08□□□□□ -0.8
COL6A1-207ENST00000612273 J3QLI3 93 aa10.08□□□□□ -0.8
COL6A1-207ENST00000612273 SS18L2Q9UHA2 77 aa10.08□□□□□ -0.8
COL6A1-207ENST00000612273 RPL36AP83881 106 aaKnown RBP10.08□□□□□ -0.8
COL6A1-207ENST00000612273 C3orf56Q8N813 242 aa10.08□□□□□ -0.8
COL6A1-207ENST00000612273 RPL36ALQ969Q0 106 aaKnown RBP10.08□□□□□ -0.8
COL6A1-207ENST00000612273 SOSTDC1Q6X4U4 206 aa10.07□□□□□ -0.8
COL6A1-207ENST00000612273 LINC00308Q8TCZ7 52 aa10.07□□□□□ -0.8
COL6A1-207ENST00000612273 FASNP49327 2511 aaKnown RBP10.07□□□□□ -0.8
COL6A1-207ENST00000612273 GAGE6Q13070 117 aa10.06□□□□□ -0.8
COL6A1-207ENST00000612273 CITED2Q99967 270 aaPredicted RBP10.06□□□□□ -0.8
COL6A1-207ENST00000612273 UBE2L6O14933 153 aa10.06□□□□□ -0.8
COL6A1-207ENST00000612273 C4orf3Q8WVX3 66 aa10.06□□□□□ -0.8
COL6A1-207ENST00000612273 WFDC11Q8NEX6 87 aa10.05□□□□□ -0.8
COL6A1-207ENST00000612273 SPANXDQ9BXN6 97 aa10.05□□□□□ -0.8
COL6A1-207ENST00000612273 SPANXCQ9NY87 97 aa10.05□□□□□ -0.8
COL6A1-207ENST00000612273 HECTD1Q9ULT8 2610 aa10.05□□□□□ -0.8
COL6A1-207ENST00000612273 CCL24O00175 119 aa10.04□□□□□ -0.8
COL6A1-207ENST00000612273 RS1O15537 224 aa10.04□□□□□ -0.8
COL6A1-207ENST00000612273 Q9HAA7 133 aa10.04□□□□□ -0.8
COL6A1-207ENST00000612273 YAE1D1Q9NRH1 226 aa10.04□□□□□ -0.8
COL6A1-207ENST00000612273 CR1P17927 2039 aa10.04□□□□□ -0.8
COL6A1-207ENST00000612273 A0A096LPF7 62 aa10.04□□□□□ -0.8
COL6A1-207ENST00000612273 SMIM1B2RUZ4 78 aa10.04□□□□□ -0.8
COL6A1-207ENST00000612273 UBR5O95071 2799 aaPredicted RBP10.03□□□□□ -0.8
COL6A1-207ENST00000612273 K7EQD1 137 aa10.03□□□□□ -0.8
COL6A1-207ENST00000612273 NDUFA1O15239 70 aa10.03□□□□□ -0.8
COL6A1-207ENST00000612273 DEFB130BP0DP73 79 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms