RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MRPS36P82909 103 aaKnown RBP9.71□□□□□ -0.86
UPF1-211ENST00000600868 PDZD11Q5EBL8 140 aa9.71□□□□□ -0.86
UPF1-211ENST00000600868 TTC32Q5I0X7 151 aa9.71□□□□□ -0.86
UPF1-211ENST00000600868 ERASQ7Z444 233 aa9.71□□□□□ -0.86
UPF1-211ENST00000600868 SCGB3A1Q96QR1 104 aa9.71□□□□□ -0.86
UPF1-211ENST00000600868 TIMM17AQ99595 171 aa9.71□□□□□ -0.86
UPF1-211ENST00000600868 CDC42SE2Q9NRR3 84 aa9.71□□□□□ -0.86
UPF1-211ENST00000600868 ANGP03950 147 aaKnown RBP9.7□□□□□ -0.86
UPF1-211ENST00000600868 FAM19A2Q8N3H0 131 aa9.7□□□□□ -0.86
UPF1-211ENST00000600868 ZNF664Q8N3J9 261 aa9.7□□□□□ -0.86
UPF1-211ENST00000600868 TMEM141Q96I45 108 aa9.7□□□□□ -0.86
UPF1-211ENST00000600868 KLK12Q9UKR0 248 aa9.7□□□□□ -0.86
UPF1-211ENST00000600868 IBA57-AS1B1ANH7 110 aa9.69□□□□□ -0.86
UPF1-211ENST00000600868 FAM104AQ969W3 186 aa9.69□□□□□ -0.86
UPF1-211ENST00000600868 DNAH1Q9P2D7 4330 aa9.69□□□□□ -0.86
UPF1-211ENST00000600868 IGLV4-3A0A075B6K6 122 aa9.68□□□□□ -0.86
UPF1-211ENST00000600868 S100A6P06703 90 aa9.68□□□□□ -0.86
UPF1-211ENST00000600868 Q6ZR54 194 aa9.68□□□□□ -0.86
UPF1-211ENST00000600868 Q6ZUT4 128 aa9.68□□□□□ -0.86
UPF1-211ENST00000600868 LINC00269Q8N2A0 174 aa9.68□□□□□ -0.86
UPF1-211ENST00000600868 OPRPNQ99935 248 aaPredicted RBP9.68□□□□□ -0.86
UPF1-211ENST00000600868 KRTAP1-5Q9BYS1 174 aa9.68□□□□□ -0.86
UPF1-211ENST00000600868 PRR34Q9NV39 138 aa9.68□□□□□ -0.86
UPF1-211ENST00000600868 ATP5LO75964 103 aa9.67□□□□□ -0.86
UPF1-211ENST00000600868 REG3AQ06141 175 aa9.67□□□□□ -0.86
UPF1-211ENST00000600868 PAPPA-AS1Q5QFB9 102 aa9.67□□□□□ -0.86
UPF1-211ENST00000600868 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.66□□□□□ -0.86
UPF1-211ENST00000600868 ENHOQ6UWT2 76 aa9.66□□□□□ -0.86
UPF1-211ENST00000600868 Q6ZN92 141 aa9.66□□□□□ -0.86
UPF1-211ENST00000600868 AMELXQ99217 191 aa9.66□□□□□ -0.86
UPF1-211ENST00000600868 TRAV8-3A0A0A6YYJ7 113 aa9.65□□□□□ -0.86
UPF1-211ENST00000600868 M0R2N4 97 aa9.65□□□□□ -0.86
UPF1-211ENST00000600868 LEPROTL1O95214 131 aa9.65□□□□□ -0.86
UPF1-211ENST00000600868 CRPP02741 224 aa9.65□□□□□ -0.86
UPF1-211ENST00000600868 RNASE13Q5GAN3 156 aaKnown RBP9.65□□□□□ -0.86
UPF1-211ENST00000600868 UBE2WQ96B02 151 aa9.65□□□□□ -0.86
UPF1-211ENST00000600868 PACRGQ96M98 296 aaPredicted RBP9.65□□□□□ -0.86
UPF1-211ENST00000600868 VCX2Q9H322 139 aa9.65□□□□□ -0.86
UPF1-211ENST00000600868 HSPB8Q9UJY1 196 aa9.65□□□□□ -0.86
UPF1-211ENST00000600868 MIAQ16674 131 aa9.64□□□□□ -0.87
UPF1-211ENST00000600868 CLPSL2Q6UWE3 100 aa9.64□□□□□ -0.87
UPF1-211ENST00000600868 TEX43Q6ZNM6 134 aa9.64□□□□□ -0.87
UPF1-211ENST00000600868 LINC00173Q6ZV60 143 aa9.64□□□□□ -0.87
UPF1-211ENST00000600868 IFI27L1Q96BM0 104 aa9.64□□□□□ -0.87
UPF1-211ENST00000600868 TRAV8-4A0A0B4J246 113 aa9.63□□□□□ -0.87
UPF1-211ENST00000600868 C5orf52A6NGY3 159 aa9.63□□□□□ -0.87
UPF1-211ENST00000600868 CCL25O15444 150 aa9.63□□□□□ -0.87
UPF1-211ENST00000600868 HIST3H2BBQ8N257 126 aa9.63□□□□□ -0.87
UPF1-211ENST00000600868 BAALCQ8WXS3 180 aa9.63□□□□□ -0.87
UPF1-211ENST00000600868 C2orf88Q9BSF0 95 aa9.63□□□□□ -0.87
UPF1-211ENST00000600868 DNAH6Q9C0G6 4158 aa9.63□□□□□ -0.87
UPF1-211ENST00000600868 IGKV3OR2-268A0A0C4DH90 116 aa9.62□□□□□ -0.87
UPF1-211ENST00000600868 LINC00959A0A1B0GUT2 108 aa9.62□□□□□ -0.87
UPF1-211ENST00000600868 IFITM10A6NMD0 228 aa9.62□□□□□ -0.87
UPF1-211ENST00000600868 FABP4P15090 132 aa9.62□□□□□ -0.87
UPF1-211ENST00000600868 SNRPEP62304 92 aaKnown RBP9.62□□□□□ -0.87
UPF1-211ENST00000600868 PMVKQ15126 192 aa9.62□□□□□ -0.87
UPF1-211ENST00000600868 ZC2HC1BQ5TFG8 222 aa9.62□□□□□ -0.87
UPF1-211ENST00000600868 CST9LQ9H4G1 147 aa9.62□□□□□ -0.87
UPF1-211ENST00000600868 SS18Q15532 418 aa9.61□□□□□ -0.87
UPF1-211ENST00000600868 NFE4Q86UQ8 179 aa9.61□□□□□ -0.87
UPF1-211ENST00000600868 RMI2Q96E14 147 aa9.61□□□□□ -0.87
UPF1-211ENST00000600868 Q9HAA7 133 aa9.61□□□□□ -0.87
UPF1-211ENST00000600868 TMA7Q9Y2S6 64 aaKnown RBP9.61□□□□□ -0.87
UPF1-211ENST00000600868 KMT2AQ03164 3969 aa9.61□□□□□ -0.87
UPF1-211ENST00000600868 TRAV13-1A0A0B4J241 112 aa9.6□□□□□ -0.87
UPF1-211ENST00000600868 PRSS1P07477 247 aa9.6□□□□□ -0.87
UPF1-211ENST00000600868 S100A2P29034 98 aa9.6□□□□□ -0.87
UPF1-211ENST00000600868 UBE2D1P51668 147 aa9.6□□□□□ -0.87
UPF1-211ENST00000600868 C6orf223Q8N319 242 aa9.6□□□□□ -0.87
UPF1-211ENST00000600868 C1orf43Q9BWL3 253 aa9.6□□□□□ -0.87
UPF1-211ENST00000600868 IGLV10-54A0A075B6I4 117 aa9.59□□□□□ -0.87
UPF1-211ENST00000600868 PRSS29PA6NIE9 313 aa9.59□□□□□ -0.87
UPF1-211ENST00000600868 FAM19A3Q7Z5A8 133 aa9.59□□□□□ -0.87
UPF1-211ENST00000600868 TM2D2Q9BX73 214 aa9.59□□□□□ -0.87
UPF1-211ENST00000600868 MAP1LC3CQ9BXW4 147 aa9.59□□□□□ -0.87
UPF1-211ENST00000600868 COX11Q9Y6N1 276 aa9.59□□□□□ -0.87
UPF1-211ENST00000600868 IGKV2D-24A0A075B6R9 120 aa9.58□□□□□ -0.88
UPF1-211ENST00000600868 TRAV12-1A0A0B4J245 112 aa9.58□□□□□ -0.88
UPF1-211ENST00000600868 C1orf134Q5TEV5 83 aa9.58□□□□□ -0.88
UPF1-211ENST00000600868 KRTAP26-1Q6PEX3 210 aa9.58□□□□□ -0.88
UPF1-211ENST00000600868 CHCHD10Q8WYQ3 142 aaPredicted RBP9.58□□□□□ -0.88
UPF1-211ENST00000600868 HIST1H2BLQ99880 126 aa9.58□□□□□ -0.88
UPF1-211ENST00000600868 SEC11AP67812 179 aa9.57□□□□□ -0.88
UPF1-211ENST00000600868 LINC00242Q5T6M2 205 aa9.57□□□□□ -0.88
UPF1-211ENST00000600868 CD164L2Q6UWJ8 174 aa9.57□□□□□ -0.88
UPF1-211ENST00000600868 Q6ZRN7 208 aaPredicted RBP9.57□□□□□ -0.88
UPF1-211ENST00000600868 XCL1P47992 114 aa9.56□□□□□ -0.88
UPF1-211ENST00000600868 A0A0J9YXV3 536 aa9.55□□□□□ -0.88
UPF1-211ENST00000600868 TINCRA0A1B0GVN0 87 aa9.55□□□□□ -0.88
UPF1-211ENST00000600868 SYS1-DBNDD2H3BUS1 97 aa9.55□□□□□ -0.88
UPF1-211ENST00000600868 SPATA12Q7Z6I5 190 aa9.55□□□□□ -0.88
UPF1-211ENST00000600868 CHTOPQ9Y3Y2 248 aaKnown RBP9.55□□□□□ -0.88
UPF1-211ENST00000600868 SACSQ9NZJ4 4579 aa9.55□□□□□ -0.88
UPF1-211ENST00000600868 IGHV3OR16-9A0A0B4J2B5 98 aa9.54□□□□□ -0.88
UPF1-211ENST00000600868 GAGE12HA6NDE8 117 aa9.54□□□□□ -0.88
UPF1-211ENST00000600868 C3orf79P0CE67 100 aa9.54□□□□□ -0.88
UPF1-211ENST00000600868 IGLC3P0DOY3 106 aa9.54□□□□□ -0.88
UPF1-211ENST00000600868 HERVK_113P63121 156 aa9.54□□□□□ -0.88
UPF1-211ENST00000600868 FOXI1Q12951 378 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms