RNA–Protein interactions for RNA: ENST00000600286.1

USHBP1-210, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-210ENST00000600286 AP5S1Q9NUS5 200 aa11.25□□□□□ -0.61
USHBP1-210ENST00000600286 CSDC2Q9Y534 153 aaKnown RBP11.25□□□□□ -0.61
USHBP1-210ENST00000600286 IGLV4-60A0A075B6I1 120 aa11.24□□□□□ -0.61
USHBP1-210ENST00000600286 REG3AQ06141 175 aa11.24□□□□□ -0.61
USHBP1-210ENST00000600286 BAGE3Q86Y29 109 aa11.24□□□□□ -0.61
USHBP1-210ENST00000600286 C1orf43Q9BWL3 253 aa11.24□□□□□ -0.61
USHBP1-210ENST00000600286 DNAH2Q9P225 4427 aa11.24□□□□□ -0.61
USHBP1-210ENST00000600286 IGKV2D-24A0A075B6R9 120 aa11.23□□□□□ -0.61
USHBP1-210ENST00000600286 TRAV8-4A0A0B4J246 113 aa11.23□□□□□ -0.61
USHBP1-210ENST00000600286 C2orf66Q6UXQ4 117 aa11.23□□□□□ -0.61
USHBP1-210ENST00000600286 ZNF664Q8N3J9 261 aa11.23□□□□□ -0.61
USHBP1-210ENST00000600286 UBE2D4Q9Y2X8 147 aa11.23□□□□□ -0.61
USHBP1-210ENST00000600286 RPL39P62891 51 aaKnown RBP11.22□□□□□ -0.61
USHBP1-210ENST00000600286 CDC42SE2Q9NRR3 84 aa11.22□□□□□ -0.61
USHBP1-210ENST00000600286 PRR34Q9NV39 138 aa11.22□□□□□ -0.61
USHBP1-210ENST00000600286 IGKV3OR2-268A0A0C4DH90 116 aa11.21□□□□□ -0.61
USHBP1-210ENST00000600286 LINC01546A6NGU7 62 aa11.21□□□□□ -0.61
USHBP1-210ENST00000600286 EREGO14944 169 aa11.21□□□□□ -0.61
USHBP1-210ENST00000600286 PAPPA-AS1Q5QFB9 102 aa11.21□□□□□ -0.61
USHBP1-210ENST00000600286 CLPSL2Q6UWE3 100 aa11.21□□□□□ -0.61
USHBP1-210ENST00000600286 ENHOQ6UWT2 76 aa11.21□□□□□ -0.61
USHBP1-210ENST00000600286 Q6ZN92 141 aa11.21□□□□□ -0.61
USHBP1-210ENST00000600286 PYGO1Q9Y3Y4 419 aa11.21□□□□□ -0.61
USHBP1-210ENST00000600286 HERC2O95714 4834 aa11.21□□□□□ -0.61
USHBP1-210ENST00000600286 CHCHD1Q96BP2 118 aaKnown RBP11.2□□□□□ -0.62
USHBP1-210ENST00000600286 PKHD1P08F94 4074 aa11.2□□□□□ -0.62
USHBP1-210ENST00000600286 DNAH17Q9UFH2 4485 aa11.2□□□□□ -0.62
USHBP1-210ENST00000600286 CCL25O15444 150 aa11.19□□□□□ -0.62
USHBP1-210ENST00000600286 NPSP0C0P6 89 aa11.19□□□□□ -0.62
USHBP1-210ENST00000600286 MRPS36P82909 103 aaKnown RBP11.19□□□□□ -0.62
USHBP1-210ENST00000600286 SS18Q15532 418 aa11.19□□□□□ -0.62
USHBP1-210ENST00000600286 TOMM6Q96B49 74 aa11.19□□□□□ -0.62
USHBP1-210ENST00000600286 SCGB3A1Q96QR1 104 aa11.19□□□□□ -0.62
USHBP1-210ENST00000600286 PRSS29PA6NIE9 313 aa11.18□□□□□ -0.62
USHBP1-210ENST00000600286 RTL8CO15255 209 aa11.18□□□□□ -0.62
USHBP1-210ENST00000600286 TMEM141Q96I45 108 aa11.17□□□□□ -0.62
USHBP1-210ENST00000600286 VCX2Q9H322 139 aa11.17□□□□□ -0.62
USHBP1-210ENST00000600286 IGLV10-54A0A075B6I4 117 aa11.16□□□□□ -0.62
USHBP1-210ENST00000600286 C1orf196B1AJZ1 125 aa11.16□□□□□ -0.62
USHBP1-210ENST00000600286 HSBP1O75506 76 aa11.16□□□□□ -0.62
USHBP1-210ENST00000600286 HBDP02042 147 aa11.16□□□□□ -0.62
USHBP1-210ENST00000600286 Q6ZUT4 128 aa11.16□□□□□ -0.62
USHBP1-210ENST00000600286 ERASQ7Z444 233 aa11.16□□□□□ -0.62
USHBP1-210ENST00000600286 TIMM17AQ99595 171 aa11.16□□□□□ -0.62
USHBP1-210ENST00000600286 C2orf88Q9BSF0 95 aa11.16□□□□□ -0.62
USHBP1-210ENST00000600286 TEX43Q6ZNM6 134 aa11.15□□□□□ -0.62
USHBP1-210ENST00000600286 Q6ZRN7 208 aaPredicted RBP11.15□□□□□ -0.62
USHBP1-210ENST00000600286 TRAV13-1A0A0B4J241 112 aa11.14□□□□□ -0.63
USHBP1-210ENST00000600286 LINC00959A0A1B0GUT2 108 aa11.14□□□□□ -0.63
USHBP1-210ENST00000600286 IFITM10A6NMD0 228 aa11.14□□□□□ -0.63
USHBP1-210ENST00000600286 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.14□□□□□ -0.63
USHBP1-210ENST00000600286 RNASE13Q5GAN3 156 aaKnown RBP11.14□□□□□ -0.63
USHBP1-210ENST00000600286 IGLV4-3A0A075B6K6 122 aa11.13□□□□□ -0.63
USHBP1-210ENST00000600286 IGIPA6NJ69 53 aa11.13□□□□□ -0.63
USHBP1-210ENST00000600286 CHCHD10Q8WYQ3 142 aaPredicted RBP11.13□□□□□ -0.63
USHBP1-210ENST00000600286 URB1-AS1Q96HZ7 61 aa11.13□□□□□ -0.63
USHBP1-210ENST00000600286 OPRPNQ99935 248 aaPredicted RBP11.13□□□□□ -0.63
USHBP1-210ENST00000600286 ATP5LO75964 103 aa11.12□□□□□ -0.63
USHBP1-210ENST00000600286 TNP2Q05952 138 aa11.12□□□□□ -0.63
USHBP1-210ENST00000600286 PKD1P98161 4303 aa11.12□□□□□ -0.63
USHBP1-210ENST00000600286 KIAA1109Q2LD37 5005 aa11.12□□□□□ -0.63
USHBP1-210ENST00000600286 GAGE12HA6NDE8 117 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST1H2BKO60814 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST1H2BJP06899 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST1H2BOP23527 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST1H2BBP33778 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 XCL1P47992 114 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST1H2BDP58876 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST1H2BCP62807 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST2H2BEQ16778 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 C14orf177Q52M58 125 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.11□□□□□ -0.63
USHBP1-210ENST00000600286 CFAP161Q6P656 301 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST1H2BHQ93079 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST1H2BNQ99877 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 HIST1H2BMQ99879 126 aa11.11□□□□□ -0.63
USHBP1-210ENST00000600286 DYNC1H1Q14204 4646 aaKnown RBP11.1□□□□□ -0.63
USHBP1-210ENST00000600286 SERF1AO75920 110 aa11.1□□□□□ -0.63
USHBP1-210ENST00000600286 PMCHL1Q16048 86 aa11.1□□□□□ -0.63
USHBP1-210ENST00000600286 BAALCQ8WXS3 180 aa11.1□□□□□ -0.63
USHBP1-210ENST00000600286 A0A087WTM6 91 aa11.09□□□□□ -0.63
USHBP1-210ENST00000600286 SEC11AP67812 179 aa11.09□□□□□ -0.63
USHBP1-210ENST00000600286 CD164L2Q6UWJ8 174 aa11.09□□□□□ -0.63
USHBP1-210ENST00000600286 PCLOQ9Y6V0 5065 aa11.09□□□□□ -0.63
USHBP1-210ENST00000600286 NDUFA6P56556 154 aa11.08□□□□□ -0.64
USHBP1-210ENST00000600286 AMELXQ99217 191 aa11.08□□□□□ -0.64
USHBP1-210ENST00000600286 MALP21145 153 aa11.07□□□□□ -0.64
USHBP1-210ENST00000600286 PMVKQ15126 192 aa11.07□□□□□ -0.64
USHBP1-210ENST00000600286 PDZD11Q5EBL8 140 aa11.07□□□□□ -0.64
USHBP1-210ENST00000600286 A0A096LNJ9 63 aa11.06□□□□□ -0.64
USHBP1-210ENST00000600286 COX7A2LO14548 114 aa11.06□□□□□ -0.64
USHBP1-210ENST00000600286 LEPROTL1O95214 131 aa11.06□□□□□ -0.64
USHBP1-210ENST00000600286 PRSS1P07477 247 aa11.06□□□□□ -0.64
USHBP1-210ENST00000600286 FAM19A2Q8N3H0 131 aa11.06□□□□□ -0.64
USHBP1-210ENST00000600286 FAM104AQ969W3 186 aa11.06□□□□□ -0.64
USHBP1-210ENST00000600286 KRTAP17-1Q9BYP8 105 aa11.06□□□□□ -0.64
USHBP1-210ENST00000600286 HSPB8Q9UJY1 196 aa11.06□□□□□ -0.64
USHBP1-210ENST00000600286 LRCOL1A6NCL2 159 aa11.05□□□□□ -0.64
USHBP1-210ENST00000600286 LECT2O14960 151 aa11.05□□□□□ -0.64
USHBP1-210ENST00000600286 APOMO95445 188 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms