RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MAPKAPK5-AS1Q8N8E1 139 aa8.67□□□□□ -1.02
UPF1-208ENST00000600012 GTSF1LQ9H1H1 148 aa8.67□□□□□ -1.02
UPF1-208ENST00000600012 LINC00588Q9Y4M8 146 aa8.67□□□□□ -1.02
UPF1-208ENST00000600012 TRBV25-1A0A075B6N4 114 aa8.66□□□□□ -1.02
UPF1-208ENST00000600012 TRBV6-8A0A0A6YYG3 113 aa8.66□□□□□ -1.02
UPF1-208ENST00000600012 KRTDAPP60985 99 aa8.65□□□□□ -1.02
UPF1-208ENST00000600012 TMEM97Q5BJF2 176 aa8.65□□□□□ -1.02
UPF1-208ENST00000600012 TTC32Q5I0X7 151 aa8.65□□□□□ -1.02
UPF1-208ENST00000600012 SCGB3A1Q96QR1 104 aa8.65□□□□□ -1.02
UPF1-208ENST00000600012 TMEM243Q9BU79 118 aa8.65□□□□□ -1.02
UPF1-208ENST00000600012 HSPB8Q9UJY1 196 aa8.65□□□□□ -1.02
UPF1-208ENST00000600012 H0Y8G0 127 aa8.64□□□□□ -1.03
UPF1-208ENST00000600012 C3orf79P0CE67 100 aa8.64□□□□□ -1.03
UPF1-208ENST00000600012 G0S2P27469 103 aa8.64□□□□□ -1.03
UPF1-208ENST00000600012 GAGE6Q13070 117 aa8.64□□□□□ -1.03
UPF1-208ENST00000600012 SH2D6Q7Z4S9 175 aa8.64□□□□□ -1.03
UPF1-208ENST00000600012 IFI27L1Q96BM0 104 aa8.64□□□□□ -1.03
UPF1-208ENST00000600012 UBE2L6O14933 153 aa8.63□□□□□ -1.03
UPF1-208ENST00000600012 ATP5LO75964 103 aa8.63□□□□□ -1.03
UPF1-208ENST00000600012 LYPD5Q6UWN5 251 aa8.63□□□□□ -1.03
UPF1-208ENST00000600012 SPATA12Q7Z6I5 190 aa8.63□□□□□ -1.03
UPF1-208ENST00000600012 CHCHD5Q9BSY4 110 aa8.63□□□□□ -1.03
UPF1-208ENST00000600012 Q9H8V8 135 aa8.63□□□□□ -1.03
UPF1-208ENST00000600012 UBE2D4Q9Y2X8 147 aa8.63□□□□□ -1.03
UPF1-208ENST00000600012 LRP1BQ9NZR2 4599 aa8.63□□□□□ -1.03
UPF1-208ENST00000600012 IGIPA6NJ69 53 aa8.62□□□□□ -1.03
UPF1-208ENST00000600012 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.62□□□□□ -1.03
UPF1-208ENST00000600012 FGF6P10767 208 aa8.62□□□□□ -1.03
UPF1-208ENST00000600012 LELP1Q5T871 98 aa8.62□□□□□ -1.03
UPF1-208ENST00000600012 ERASQ7Z444 233 aa8.62□□□□□ -1.03
UPF1-208ENST00000600012 Q8N1X5 172 aa8.62□□□□□ -1.03
UPF1-208ENST00000600012 OPRPNQ99935 248 aaPredicted RBP8.62□□□□□ -1.03
UPF1-208ENST00000600012 MAP1LC3CQ9BXW4 147 aa8.62□□□□□ -1.03
UPF1-208ENST00000600012 IGLV4-3A0A075B6K6 122 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 LINC01549A6NIU2 74 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 ESRGQ1W209 222 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 ZC2HC1BQ5TFG8 222 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 AMMECR1LQ6DCA0 310 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 Q6ZN92 141 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 Q6ZUT4 128 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 BAALCQ8WXS3 180 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 TIMM17AQ99595 171 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 UPK3BQ9BT76 320 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 SPANXA1Q9NS26 97 aa8.61□□□□□ -1.03
UPF1-208ENST00000600012 SYS1-DBNDD2H3BUS1 97 aa8.6□□□□□ -1.03
UPF1-208ENST00000600012 TIRAPP58753 221 aa8.6□□□□□ -1.03
UPF1-208ENST00000600012 RNASE13Q5GAN3 156 aaKnown RBP8.6□□□□□ -1.03
UPF1-208ENST00000600012 TMEM141Q96I45 108 aa8.6□□□□□ -1.03
UPF1-208ENST00000600012 KRTAP1-5Q9BYS1 174 aa8.6□□□□□ -1.03
UPF1-208ENST00000600012 PYGO1Q9Y3Y4 419 aa8.6□□□□□ -1.03
UPF1-208ENST00000600012 H7C423 109 aa8.59□□□□□ -1.03
UPF1-208ENST00000600012 PRSS1P07477 247 aa8.59□□□□□ -1.03
UPF1-208ENST00000600012 MRPL52Q86TS9 123 aaKnown RBP8.59□□□□□ -1.03
UPF1-208ENST00000600012 Q8N976 141 aa8.59□□□□□ -1.03
UPF1-208ENST00000600012 FAM104AQ969W3 186 aa8.59□□□□□ -1.03
UPF1-208ENST00000600012 PMCHL2Q9BQD1 86 aa8.59□□□□□ -1.03
UPF1-208ENST00000600012 TIMM21Q9BVV7 248 aa8.59□□□□□ -1.03
UPF1-208ENST00000600012 TMEM262E9PQX1 116 aa8.58□□□□□ -1.04
UPF1-208ENST00000600012 MPV17L2Q567V2 206 aa8.58□□□□□ -1.04
UPF1-208ENST00000600012 PYY3Q5JQD4 70 aa8.58□□□□□ -1.04
UPF1-208ENST00000600012 DGAT2L7PQ6IED9 249 aa8.58□□□□□ -1.04
UPF1-208ENST00000600012 WFDC10BQ8IUB3 73 aa8.58□□□□□ -1.04
UPF1-208ENST00000600012 Q8N3U1 123 aa8.58□□□□□ -1.04
UPF1-208ENST00000600012 OR5A1Q8NGJ0 315 aa8.58□□□□□ -1.04
UPF1-208ENST00000600012 MRPS16Q9Y3D3 137 aaKnown RBP8.58□□□□□ -1.04
UPF1-208ENST00000600012 IGLV4-60A0A075B6I1 120 aa8.57□□□□□ -1.04
UPF1-208ENST00000600012 TRAV8-6A0A0B4J262 113 aa8.57□□□□□ -1.04
UPF1-208ENST00000600012 SCGB1D1O95968 90 aa8.57□□□□□ -1.04
UPF1-208ENST00000600012 RBX1P62877 108 aa8.57□□□□□ -1.04
UPF1-208ENST00000600012 SMAGPQ0VAQ4 97 aa8.57□□□□□ -1.04
UPF1-208ENST00000600012 JOSD1Q15040 202 aaPredicted RBP8.57□□□□□ -1.04
UPF1-208ENST00000600012 PET117Q6UWS5 81 aa8.57□□□□□ -1.04
UPF1-208ENST00000600012 TMEM101Q96IK0 257 aa8.57□□□□□ -1.04
UPF1-208ENST00000600012 ZNF25P17030 456 aaPredicted RBP8.56□□□□□ -1.04
UPF1-208ENST00000600012 KRTAP10-2P60368 255 aa8.56□□□□□ -1.04
UPF1-208ENST00000600012 MRPS36P82909 103 aaKnown RBP8.56□□□□□ -1.04
UPF1-208ENST00000600012 ODF1Q14990 250 aa8.56□□□□□ -1.04
UPF1-208ENST00000600012 PMVKQ15126 192 aa8.56□□□□□ -1.04
UPF1-208ENST00000600012 LINC01545Q5VT33 79 aa8.56□□□□□ -1.04
UPF1-208ENST00000600012 CDPF1Q6NVV7 123 aa8.56□□□□□ -1.04
UPF1-208ENST00000600012 CDC42SE2Q9NRR3 84 aa8.56□□□□□ -1.04
UPF1-208ENST00000600012 CSDC2Q9Y534 153 aaKnown RBP8.56□□□□□ -1.04
UPF1-208ENST00000600012 APOBP04114 4563 aaKnown RBP8.56□□□□□ -1.04
UPF1-208ENST00000600012 A0A087WX48 190 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 TRAV12-1A0A0B4J245 112 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 C20orf202A1L168 122 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 NPSP0C0P6 89 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 PAPPA-AS1Q5QFB9 102 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 TEX43Q6ZNM6 134 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 ATOH7Q8N100 152 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 ZNF664Q8N3J9 261 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 AMELXQ99217 191 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 VCX2Q9H322 139 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 CST9LQ9H4G1 147 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 MRPL35Q9NZE8 188 aaKnown RBP8.55□□□□□ -1.04
UPF1-208ENST00000600012 DNAH5Q8TE73 4624 aa8.55□□□□□ -1.04
UPF1-208ENST00000600012 IGHV3-30P01768 117 aa8.54□□□□□ -1.04
UPF1-208ENST00000600012 IGHV3-33P01772 117 aa8.54□□□□□ -1.04
UPF1-208ENST00000600012 IGHV3-30-3P0DP02 117 aa8.54□□□□□ -1.04
UPF1-208ENST00000600012 IGHV3-30-5P0DP03 117 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms