RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 UBE2D4Q9Y2X8 147 aa9.34□□□□□ -0.91
SHKBP1-217ENST00000598558 COX11Q9Y6N1 276 aa9.34□□□□□ -0.91
SHKBP1-217ENST00000598558 EREGO14944 169 aa9.33□□□□□ -0.92
SHKBP1-217ENST00000598558 HLA-DQA1P01909 254 aa9.33□□□□□ -0.92
SHKBP1-217ENST00000598558 LAMTOR2Q9Y2Q5 125 aa9.33□□□□□ -0.92
SHKBP1-217ENST00000598558 ZNF25P17030 456 aaPredicted RBP9.32□□□□□ -0.92
SHKBP1-217ENST00000598558 KRTAP10-1P60331 282 aa9.32□□□□□ -0.92
SHKBP1-217ENST00000598558 RNASE13Q5GAN3 156 aaKnown RBP9.32□□□□□ -0.92
SHKBP1-217ENST00000598558 OR5A1Q8NGJ0 315 aa9.32□□□□□ -0.92
SHKBP1-217ENST00000598558 OPRPNQ99935 248 aaPredicted RBP9.32□□□□□ -0.92
SHKBP1-217ENST00000598558 ALKBH7Q9BT30 221 aaPredicted RBP9.32□□□□□ -0.92
SHKBP1-217ENST00000598558 MAP1LC3AQ9H492 121 aa9.32□□□□□ -0.92
SHKBP1-217ENST00000598558 IFI27P40305 119 aaPredicted RBP9.31□□□□□ -0.92
SHKBP1-217ENST00000598558 ZNF664Q8N3J9 261 aa9.31□□□□□ -0.92
SHKBP1-217ENST00000598558 Q8N8P6 123 aa9.31□□□□□ -0.92
SHKBP1-217ENST00000598558 NTN5Q8WTR8 489 aaPredicted RBP9.31□□□□□ -0.92
SHKBP1-217ENST00000598558 KRTAP17-1Q9BYP8 105 aa9.31□□□□□ -0.92
SHKBP1-217ENST00000598558 MRPL18Q9H0U6 180 aaKnown RBP9.31□□□□□ -0.92
SHKBP1-217ENST00000598558 HERC2O95714 4834 aa9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 TRAV8-4A0A0B4J246 113 aa9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 LINC00959A0A1B0GUT2 108 aa9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 USP17L23D6RBM5 183 aa9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 FABP9Q0Z7S8 132 aa9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 Q6ZUT4 128 aa9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 CBLN2Q8IUK8 224 aa9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 TMEM101Q96IK0 257 aa9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 CSDC2Q9Y534 153 aaKnown RBP9.3□□□□□ -0.92
SHKBP1-217ENST00000598558 GAGE12HA6NDE8 117 aa9.29□□□□□ -0.92
SHKBP1-217ENST00000598558 CHCHD10Q8WYQ3 142 aaPredicted RBP9.29□□□□□ -0.92
SHKBP1-217ENST00000598558 TIMM21Q9BVV7 248 aa9.29□□□□□ -0.92
SHKBP1-217ENST00000598558 RYR1P21817 5038 aa9.29□□□□□ -0.92
SHKBP1-217ENST00000598558 APOBP04114 4563 aaKnown RBP9.29□□□□□ -0.92
SHKBP1-217ENST00000598558 IGLV5-52A0A0A0MRZ9 124 aa9.28□□□□□ -0.92
SHKBP1-217ENST00000598558 PRSS1P07477 247 aa9.28□□□□□ -0.92
SHKBP1-217ENST00000598558 RAB5AP20339 215 aa9.28□□□□□ -0.92
SHKBP1-217ENST00000598558 COX19Q49B96 90 aa9.28□□□□□ -0.92
SHKBP1-217ENST00000598558 LINC01620Q4KN68 170 aa9.28□□□□□ -0.92
SHKBP1-217ENST00000598558 DGAT2L7PQ6IED9 249 aa9.28□□□□□ -0.92
SHKBP1-217ENST00000598558 MT-ND6P03923 174 aa9.27□□□□□ -0.93
SHKBP1-217ENST00000598558 FOXI1Q12951 378 aa9.27□□□□□ -0.93
SHKBP1-217ENST00000598558 CDPF1Q6NVV7 123 aa9.27□□□□□ -0.93
SHKBP1-217ENST00000598558 TRAPPC1Q9Y5R8 145 aa9.27□□□□□ -0.93
SHKBP1-217ENST00000598558 CCL25O15444 150 aa9.26□□□□□ -0.93
SHKBP1-217ENST00000598558 GCSHP23434 173 aa9.26□□□□□ -0.93
SHKBP1-217ENST00000598558 TMEM18Q96B42 140 aa9.26□□□□□ -0.93
SHKBP1-217ENST00000598558 NXT2Q9NPJ8 142 aaKnown RBP9.26□□□□□ -0.93
SHKBP1-217ENST00000598558 SLPIP03973 132 aa9.25□□□□□ -0.93
SHKBP1-217ENST00000598558 XCL1P47992 114 aa9.25□□□□□ -0.93
SHKBP1-217ENST00000598558 ZC2HC1BQ5TFG8 222 aa9.25□□□□□ -0.93
SHKBP1-217ENST00000598558 C15orf56Q8N910 161 aa9.25□□□□□ -0.93
SHKBP1-217ENST00000598558 URB1-AS1Q96HZ7 61 aa9.25□□□□□ -0.93
SHKBP1-217ENST00000598558 SMCO4Q9NRQ5 59 aa9.25□□□□□ -0.93
SHKBP1-217ENST00000598558 SPANXA1Q9NS26 97 aa9.25□□□□□ -0.93
SHKBP1-217ENST00000598558 FAM30AQ9NZY2 134 aa9.25□□□□□ -0.93
SHKBP1-217ENST00000598558 DNAH8Q96JB1 4490 aa9.25□□□□□ -0.93
SHKBP1-217ENST00000598558 IGLV4-3A0A075B6K6 122 aa9.24□□□□□ -0.93
SHKBP1-217ENST00000598558 TRAV13-1A0A0B4J241 112 aa9.24□□□□□ -0.93
SHKBP1-217ENST00000598558 LINC01546A6NGU7 62 aa9.24□□□□□ -0.93
SHKBP1-217ENST00000598558 MRPS36P82909 103 aaKnown RBP9.24□□□□□ -0.93
SHKBP1-217ENST00000598558 C2orf66Q6UXQ4 117 aa9.24□□□□□ -0.93
SHKBP1-217ENST00000598558 PYGO1Q9Y3Y4 419 aa9.24□□□□□ -0.93
SHKBP1-217ENST00000598558 XGP55808 180 aa9.23□□□□□ -0.93
SHKBP1-217ENST00000598558 ORMDL2Q53FV1 153 aa9.23□□□□□ -0.93
SHKBP1-217ENST00000598558 PRSS3P2Q8NHM4 247 aa9.23□□□□□ -0.93
SHKBP1-217ENST00000598558 HSPG2P98160 4391 aa9.23□□□□□ -0.93
SHKBP1-217ENST00000598558 IGIPA6NJ69 53 aa9.22□□□□□ -0.93
SHKBP1-217ENST00000598558 SMAGPQ0VAQ4 97 aa9.22□□□□□ -0.93
SHKBP1-217ENST00000598558 SS18Q15532 418 aa9.22□□□□□ -0.93
SHKBP1-217ENST00000598558 C18orf32Q8TCD1 76 aa9.22□□□□□ -0.93
SHKBP1-217ENST00000598558 CYSLTR1Q9Y271 337 aa9.22□□□□□ -0.93
SHKBP1-217ENST00000598558 K7EMI3 77 aa9.21□□□□□ -0.94
SHKBP1-217ENST00000598558 SCO1O75880 301 aa9.21□□□□□ -0.94
SHKBP1-217ENST00000598558 CDK2AP2O75956 126 aa9.21□□□□□ -0.94
SHKBP1-217ENST00000598558 HAMPP81172 84 aa9.21□□□□□ -0.94
SHKBP1-217ENST00000598558 CD164L2Q6UWJ8 174 aa9.21□□□□□ -0.94
SHKBP1-217ENST00000598558 LINC00173Q6ZV60 143 aa9.21□□□□□ -0.94
SHKBP1-217ENST00000598558 hDV102S1A0JD36 115 aa9.2□□□□□ -0.94
SHKBP1-217ENST00000598558 COLCA2A8K830 154 aa9.2□□□□□ -0.94
SHKBP1-217ENST00000598558 C1orf196B1AJZ1 125 aa9.2□□□□□ -0.94
SHKBP1-217ENST00000598558 HIGD2BQ4VC39 106 aa9.2□□□□□ -0.94
SHKBP1-217ENST00000598558 C14orf177Q52M58 125 aa9.2□□□□□ -0.94
SHKBP1-217ENST00000598558 TOMM6Q96B49 74 aa9.2□□□□□ -0.94
SHKBP1-217ENST00000598558 C5orf38Q86SI9 138 aa9.19□□□□□ -0.94
SHKBP1-217ENST00000598558 LINC00526Q96FQ7 95 aa9.19□□□□□ -0.94
SHKBP1-217ENST00000598558 AMELXQ99217 191 aa9.19□□□□□ -0.94
SHKBP1-217ENST00000598558 A0A096LNJ9 63 aa9.18□□□□□ -0.94
SHKBP1-217ENST00000598558 IFITM10A6NMD0 228 aa9.18□□□□□ -0.94
SHKBP1-217ENST00000598558 COX6A2Q02221 97 aa9.18□□□□□ -0.94
SHKBP1-217ENST00000598558 TMEM141Q96I45 108 aa9.18□□□□□ -0.94
SHKBP1-217ENST00000598558 LINC00242Q5T6M2 205 aa9.17□□□□□ -0.94
SHKBP1-217ENST00000598558 FA2HQ7L5A8 372 aa9.17□□□□□ -0.94
SHKBP1-217ENST00000598558 C9orf163Q8N9P6 203 aa9.17□□□□□ -0.94
SHKBP1-217ENST00000598558 KRTAP4-5Q9BYR2 181 aa9.17□□□□□ -0.94
SHKBP1-217ENST00000598558 GVQW2A0A096LPI5 108 aaPredicted RBP9.16□□□□□ -0.94
SHKBP1-217ENST00000598558 IGHV3OR16-9A0A0B4J2B5 98 aa9.16□□□□□ -0.94
SHKBP1-217ENST00000598558 TRGC2P03986 189 aa9.16□□□□□ -0.94
SHKBP1-217ENST00000598558 LINC00614P0C842 121 aa9.16□□□□□ -0.94
SHKBP1-217ENST00000598558 UBE2D1P51668 147 aa9.16□□□□□ -0.94
SHKBP1-217ENST00000598558 CNBPP62633 177 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms