RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 TMEM136Q6ZRR5 245 aa7.86□□□□□ -1.15
LIG3-213ENST00000590630 BAALCQ8WXS3 180 aa7.86□□□□□ -1.15
LIG3-213ENST00000590630 IGLV5-52A0A0A0MRZ9 124 aa7.85□□□□□ -1.15
LIG3-213ENST00000590630 LECT2O14960 151 aa7.85□□□□□ -1.15
LIG3-213ENST00000590630 CDK2AP2O75956 126 aa7.85□□□□□ -1.15
LIG3-213ENST00000590630 NPYP01303 97 aa7.85□□□□□ -1.15
LIG3-213ENST00000590630 FUSP35637 526 aaKnown RBP eCLIP7.85□□□□□ -1.15
LIG3-213ENST00000590630 MRPL52Q86TS9 123 aaKnown RBP7.85□□□□□ -1.15
LIG3-213ENST00000590630 TMEM101Q96IK0 257 aa7.85□□□□□ -1.15
LIG3-213ENST00000590630 PRELID3AQ96N28 172 aa7.85□□□□□ -1.15
LIG3-213ENST00000590630 SMIM2Q9BVW6 85 aa7.85□□□□□ -1.15
LIG3-213ENST00000590630 LAMTOR2Q9Y2Q5 125 aa7.85□□□□□ -1.15
LIG3-213ENST00000590630 HLA-DQA1P01909 254 aa7.84□□□□□ -1.15
LIG3-213ENST00000590630 SMAGPQ0VAQ4 97 aa7.84□□□□□ -1.15
LIG3-213ENST00000590630 C14orf177Q52M58 125 aa7.84□□□□□ -1.15
LIG3-213ENST00000590630 OR5A1Q8NGJ0 315 aa7.84□□□□□ -1.15
LIG3-213ENST00000590630 SMCO4Q9NRQ5 59 aa7.84□□□□□ -1.15
LIG3-213ENST00000590630 IGLV10-54A0A075B6I4 117 aa7.83□□□□□ -1.16
LIG3-213ENST00000590630 C1orf196B1AJZ1 125 aa7.83□□□□□ -1.16
LIG3-213ENST00000590630 GCSHP23434 173 aa7.83□□□□□ -1.16
LIG3-213ENST00000590630 KRTAP26-1Q6PEX3 210 aa7.83□□□□□ -1.16
LIG3-213ENST00000590630 TMEM18Q96B42 140 aa7.83□□□□□ -1.16
LIG3-213ENST00000590630 CSDC2Q9Y534 153 aaKnown RBP7.83□□□□□ -1.16
LIG3-213ENST00000590630 PRSS47A8MTI9 375 aa7.82□□□□□ -1.16
LIG3-213ENST00000590630 RPS10P5Q9NQ39 176 aa7.82□□□□□ -1.16
LIG3-213ENST00000590630 HERC2O95714 4834 aa7.82□□□□□ -1.16
LIG3-213ENST00000590630 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.81□□□□□ -1.16
LIG3-213ENST00000590630 IGKV3OR2-268A0A0C4DH90 116 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 C5orf52A6NGY3 159 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 USP17L23D6RBM5 183 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 COX19Q49B96 90 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 DGAT2L7PQ6IED9 249 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 TIMM21Q9BVV7 248 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 MAP1LC3AQ9H492 121 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 CDC42SE2Q9NRR3 84 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 UBE2D4Q9Y2X8 147 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 RYR1P21817 5038 aa7.81□□□□□ -1.16
LIG3-213ENST00000590630 COLCA2A8K830 154 aa7.8□□□□□ -1.16
LIG3-213ENST00000590630 LINC00587B1AMM8 73 aa7.8□□□□□ -1.16
LIG3-213ENST00000590630 RAB5AP20339 215 aa7.8□□□□□ -1.16
LIG3-213ENST00000590630 KRTAP10-1P60331 282 aa7.8□□□□□ -1.16
LIG3-213ENST00000590630 CBLN2Q8IUK8 224 aa7.8□□□□□ -1.16
LIG3-213ENST00000590630 ZNF664Q8N3J9 261 aa7.8□□□□□ -1.16
LIG3-213ENST00000590630 GNB1LQ9BYB4 327 aa7.8□□□□□ -1.16
LIG3-213ENST00000590630 CHCHD10Q8WYQ3 142 aaPredicted RBP7.79□□□□□ -1.16
LIG3-213ENST00000590630 HSPG2P98160 4391 aa7.79□□□□□ -1.16
LIG3-213ENST00000590630 APOBP04114 4563 aaKnown RBP7.79□□□□□ -1.16
LIG3-213ENST00000590630 LOC389332A0A1B0GUA5 103 aa7.78□□□□□ -1.16
LIG3-213ENST00000590630 LINC00959A0A1B0GUT2 108 aa7.78□□□□□ -1.16
LIG3-213ENST00000590630 GAGE12HA6NDE8 117 aa7.78□□□□□ -1.16
LIG3-213ENST00000590630 K7EMI3 77 aa7.78□□□□□ -1.16
LIG3-213ENST00000590630 MT-ND6P03923 174 aa7.78□□□□□ -1.16
LIG3-213ENST00000590630 Q8N8P6 123 aa7.78□□□□□ -1.16
LIG3-213ENST00000590630 SPANXA1Q9NS26 97 aa7.78□□□□□ -1.16
LIG3-213ENST00000590630 CCL25O15444 150 aa7.77□□□□□ -1.17
LIG3-213ENST00000590630 PRSS1P07477 247 aa7.77□□□□□ -1.17
LIG3-213ENST00000590630 RPL39P62891 51 aaKnown RBP7.77□□□□□ -1.17
LIG3-213ENST00000590630 SS18Q15532 418 aa7.77□□□□□ -1.17
LIG3-213ENST00000590630 NXT2Q9NPJ8 142 aaKnown RBP7.77□□□□□ -1.17
LIG3-213ENST00000590630 XCL1P47992 114 aa7.76□□□□□ -1.17
LIG3-213ENST00000590630 SNRPEP62304 92 aaKnown RBP7.76□□□□□ -1.17
LIG3-213ENST00000590630 KIAA1644Q3SXP7 199 aa7.76□□□□□ -1.17
LIG3-213ENST00000590630 CFAP161Q6P656 301 aa7.76□□□□□ -1.17
LIG3-213ENST00000590630 hDV102S1A0JD36 115 aa7.75□□□□□ -1.17
LIG3-213ENST00000590630 MRPS36P82909 103 aaKnown RBP7.75□□□□□ -1.17
LIG3-213ENST00000590630 FOXI1Q12951 378 aa7.75□□□□□ -1.17
LIG3-213ENST00000590630 ORMDL2Q53FV1 153 aa7.75□□□□□ -1.17
LIG3-213ENST00000590630 CD164L2Q6UWJ8 174 aa7.75□□□□□ -1.17
LIG3-213ENST00000590630 Q6ZUT4 128 aa7.75□□□□□ -1.17
LIG3-213ENST00000590630 PYGO1Q9Y3Y4 419 aa7.75□□□□□ -1.17
LIG3-213ENST00000590630 IFI27P40305 119 aaPredicted RBP7.74□□□□□ -1.17
LIG3-213ENST00000590630 XGP55808 180 aa7.74□□□□□ -1.17
LIG3-213ENST00000590630 RNASE13Q5GAN3 156 aaKnown RBP7.74□□□□□ -1.17
LIG3-213ENST00000590630 C15orf56Q8N910 161 aa7.74□□□□□ -1.17
LIG3-213ENST00000590630 ALKBH7Q9BT30 221 aaPredicted RBP7.74□□□□□ -1.17
LIG3-213ENST00000590630 MRPL18Q9H0U6 180 aaKnown RBP7.74□□□□□ -1.17
LIG3-213ENST00000590630 AP5S1Q9NUS5 200 aa7.74□□□□□ -1.17
LIG3-213ENST00000590630 CYSLTR1Q9Y271 337 aa7.74□□□□□ -1.17
LIG3-213ENST00000590630 TGIF2-C20orf24A0A0A6YYL0 155 aa7.73□□□□□ -1.17
LIG3-213ENST00000590630 TRAV13-1A0A0B4J241 112 aa7.73□□□□□ -1.17
LIG3-213ENST00000590630 G0S2P27469 103 aa7.73□□□□□ -1.17
LIG3-213ENST00000590630 CNBPP62633 177 aaKnown RBP7.73□□□□□ -1.17
LIG3-213ENST00000590630 FABP9Q0Z7S8 132 aa7.73□□□□□ -1.17
LIG3-213ENST00000590630 LINC01620Q4KN68 170 aa7.73□□□□□ -1.17
LIG3-213ENST00000590630 Q6ZSA8 131 aa7.73□□□□□ -1.17
LIG3-213ENST00000590630 FAM104AQ969W3 186 aa7.73□□□□□ -1.17
LIG3-213ENST00000590630 GVQW2A0A096LPI5 108 aaPredicted RBP7.72□□□□□ -1.17
LIG3-213ENST00000590630 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.72□□□□□ -1.17
LIG3-213ENST00000590630 C2orf66Q6UXQ4 117 aa7.72□□□□□ -1.17
LIG3-213ENST00000590630 C9orf163Q8N9P6 203 aa7.72□□□□□ -1.17
LIG3-213ENST00000590630 PRSS3P2Q8NHM4 247 aa7.72□□□□□ -1.17
LIG3-213ENST00000590630 IGHV1-58A0A0C4DH39 117 aa7.71□□□□□ -1.18
LIG3-213ENST00000590630 NPSP0C0P6 89 aa7.71□□□□□ -1.18
LIG3-213ENST00000590630 LBHQ53QV2 105 aaPredicted RBP7.71□□□□□ -1.18
LIG3-213ENST00000590630 Q8N1X5 172 aa7.71□□□□□ -1.18
LIG3-213ENST00000590630 TMEM141Q96I45 108 aa7.71□□□□□ -1.18
LIG3-213ENST00000590630 OPRPNQ99935 248 aaPredicted RBP7.71□□□□□ -1.18
LIG3-213ENST00000590630 FAM30AQ9NZY2 134 aa7.71□□□□□ -1.18
LIG3-213ENST00000590630 TRAPPC1Q9Y5R8 145 aa7.71□□□□□ -1.18
LIG3-213ENST00000590630 PCLOQ9Y6V0 5065 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms