RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 NTF3P20783 257 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 LORP23490 312 aaPredicted RBP7.17□□□□□ -1.26
ZNF540-209ENST00000590588 CKS2P33552 79 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 RNASE4P34096 147 aaKnown RBP7.17□□□□□ -1.26
ZNF540-209ENST00000590588 KRTDAPP60985 99 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 RPL32P62910 135 aaKnown RBP7.17□□□□□ -1.26
ZNF540-209ENST00000590588 ERCC8Q13216 396 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 TWIST1Q15672 202 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 MRPL51Q4U2R6 128 aaKnown RBP7.17□□□□□ -1.26
ZNF540-209ENST00000590588 PRSS3P2Q8NHM4 247 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 BAALCQ8WXS3 180 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 MIEN1Q9BRT3 115 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 MAP1LC3CQ9BXW4 147 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 MAP1LC3AQ9H492 121 aa7.17□□□□□ -1.26
ZNF540-209ENST00000590588 TRAV8-3A0A0A6YYJ7 113 aa7.16□□□□□ -1.26
ZNF540-209ENST00000590588 D6R8Y8 96 aa7.16□□□□□ -1.26
ZNF540-209ENST00000590588 PIK3CD-AS1Q5SR53 167 aa7.16□□□□□ -1.26
ZNF540-209ENST00000590588 ST20Q9HBF5 79 aa7.16□□□□□ -1.26
ZNF540-209ENST00000590588 COX11Q9Y6N1 276 aa7.16□□□□□ -1.26
ZNF540-209ENST00000590588 IGHV1OR15-1A0A075B7D0 117 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 KRTAP9-6A0A140TA67 174 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 SYS1-DBNDD2H3BUS1 97 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 HBDP02042 147 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 G0S2P27469 103 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 AMN1Q8IY45 258 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 RNF185Q96GF1 192 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 AP1S3Q96PC3 154 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 C20orf78Q9BR46 151 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 C2orf88Q9BSF0 95 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 TPPP3Q9BW30 176 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 UQCR10Q9UDW1 63 aa7.15□□□□□ -1.26
ZNF540-209ENST00000590588 LOC100131303A0A0U1RQF7 123 aa7.14□□□□□ -1.27
ZNF540-209ENST00000590588 SPANXN1Q5VSR9 72 aa7.14□□□□□ -1.27
ZNF540-209ENST00000590588 LINC01545Q5VT33 79 aa7.14□□□□□ -1.27
ZNF540-209ENST00000590588 ATP6V0E2Q8NHE4 81 aa7.14□□□□□ -1.27
ZNF540-209ENST00000590588 RASL10AQ92737 203 aa7.14□□□□□ -1.27
ZNF540-209ENST00000590588 PTH2Q96A98 100 aa7.14□□□□□ -1.27
ZNF540-209ENST00000590588 C14orf144Q96I85 54 aa7.14□□□□□ -1.27
ZNF540-209ENST00000590588 DPH3P1Q9H4G8 78 aa7.14□□□□□ -1.27
ZNF540-209ENST00000590588 C11orf21Q9P2W6 132 aa7.14□□□□□ -1.27
ZNF540-209ENST00000590588 TMSB15BA0A087X1C1 80 aa7.13□□□□□ -1.27
ZNF540-209ENST00000590588 TCAPO15273 167 aa7.13□□□□□ -1.27
ZNF540-209ENST00000590588 LELP1Q5T871 98 aa7.13□□□□□ -1.27
ZNF540-209ENST00000590588 FAM19A2Q8N3H0 131 aa7.13□□□□□ -1.27
ZNF540-209ENST00000590588 Q8N8P6 123 aa7.13□□□□□ -1.27
ZNF540-209ENST00000590588 TRAV4A0A0B4J268 109 aa7.12□□□□□ -1.27
ZNF540-209ENST00000590588 HSBP1L1C9JCN9 74 aa7.12□□□□□ -1.27
ZNF540-209ENST00000590588 M0R143 59 aa7.12□□□□□ -1.27
ZNF540-209ENST00000590588 S100A4P26447 101 aaKnown RBP7.12□□□□□ -1.27
ZNF540-209ENST00000590588 FAM159AQ6UWV7 190 aa7.12□□□□□ -1.27
ZNF540-209ENST00000590588 OR4C5Q8NGB2 326 aa7.12□□□□□ -1.27
ZNF540-209ENST00000590588 PMCHL2Q9BQD1 86 aa7.12□□□□□ -1.27
ZNF540-209ENST00000590588 SPXQ9BT56 116 aa7.12□□□□□ -1.27
ZNF540-209ENST00000590588 TRGV11A0A075B6L2 103 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 ATP5LO75964 103 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 TNFRSF6BO95407 300 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 NPYP01303 97 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 IGLC3P0DOY3 106 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 FCER1GP30273 86 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 SPATA45Q537H7 98 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 PRR9Q5T870 116 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 RMI2Q96E14 147 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 PRO1933Q9H354 126 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 PHLDA3Q9Y5J5 127 aa7.11□□□□□ -1.27
ZNF540-209ENST00000590588 H3BVH4 76 aa7.1□□□□□ -1.27
ZNF540-209ENST00000590588 IFI27P40305 119 aaPredicted RBP7.1□□□□□ -1.27
ZNF540-209ENST00000590588 ORMDL2Q53FV1 153 aa7.1□□□□□ -1.27
ZNF540-209ENST00000590588 Q6ZQT7 251 aa7.1□□□□□ -1.27
ZNF540-209ENST00000590588 C9orf85Q96MD7 179 aa7.1□□□□□ -1.27
ZNF540-209ENST00000590588 PAM16Q9Y3D7 125 aa7.1□□□□□ -1.27
ZNF540-209ENST00000590588 A0A096LNJ9 63 aa7.09□□□□□ -1.27
ZNF540-209ENST00000590588 RNASE3P12724 160 aaKnown RBP7.09□□□□□ -1.27
ZNF540-209ENST00000590588 GATA1P15976 413 aaPredicted RBP7.09□□□□□ -1.27
ZNF540-209ENST00000590588 DAZ4Q86SG3 579 aaKnown RBP7.09□□□□□ -1.27
ZNF540-209ENST00000590588 NRACQ8N912 160 aa7.09□□□□□ -1.27
ZNF540-209ENST00000590588 PRADC1Q9BSG0 188 aa7.09□□□□□ -1.27
ZNF540-209ENST00000590588 SMIM2Q9BVW6 85 aa7.09□□□□□ -1.27
ZNF540-209ENST00000590588 GTSF1LQ9H1H1 148 aa7.09□□□□□ -1.27
ZNF540-209ENST00000590588 DAZ3Q9NR90 486 aaKnown RBP7.09□□□□□ -1.27
ZNF540-209ENST00000590588 TRBV6-5A0A0K0K1A5 114 aa7.08□□□□□ -1.28
ZNF540-209ENST00000590588 IFI27L1Q96BM0 104 aa7.08□□□□□ -1.28
ZNF540-209ENST00000590588 LINC01600Q96MT4 127 aa7.08□□□□□ -1.28
ZNF540-209ENST00000590588 LPAP08519 4548 aa7.08□□□□□ -1.28
ZNF540-209ENST00000590588 IGKV2D-24A0A075B6R9 120 aa7.07□□□□□ -1.28
ZNF540-209ENST00000590588 IGHV3-16A0A0C4DH30 117 aa7.07□□□□□ -1.28
ZNF540-209ENST00000590588 DLEU1O43261 78 aa7.07□□□□□ -1.28
ZNF540-209ENST00000590588 SMIM17P0DL12 118 aa7.07□□□□□ -1.28
ZNF540-209ENST00000590588 SUMO2P61956 95 aaKnown RBP7.07□□□□□ -1.28
ZNF540-209ENST00000590588 C14orf177Q52M58 125 aa7.07□□□□□ -1.28
ZNF540-209ENST00000590588 MUC21Q5SSG8 566 aa7.07□□□□□ -1.28
ZNF540-209ENST00000590588 Q8N3U1 123 aa7.07□□□□□ -1.28
ZNF540-209ENST00000590588 SLC25A29Q8N8R3 303 aa7.07□□□□□ -1.28
ZNF540-209ENST00000590588 KIF25-AS1Q9Y6Z4 181 aa7.07□□□□□ -1.28
ZNF540-209ENST00000590588 TRAV12-1A0A0B4J245 112 aa7.06□□□□□ -1.28
ZNF540-209ENST00000590588 TRBV6-4A0A1B0GX49 114 aa7.06□□□□□ -1.28
ZNF540-209ENST00000590588 M0R2P5 195 aa7.06□□□□□ -1.28
ZNF540-209ENST00000590588 RHOHQ15669 191 aa7.06□□□□□ -1.28
ZNF540-209ENST00000590588 H7C1H1 209 aa7.05□□□□□ -1.28
ZNF540-209ENST00000590588 CIDEAO60543 219 aa7.05□□□□□ -1.28
ZNF540-209ENST00000590588 NPSP0C0P6 89 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms