RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 H7C423 109 aa8.02□□□□□ -1.13
LIG3-204ENST00000585740 SMIM13P0DJ93 91 aa8.02□□□□□ -1.13
LIG3-204ENST00000585740 ZNF22P17026 224 aaPredicted RBP8.02□□□□□ -1.13
LIG3-204ENST00000585740 LGALS3P17931 250 aaKnown RBP8.02□□□□□ -1.13
LIG3-204ENST00000585740 EMP1P54849 157 aa8.02□□□□□ -1.13
LIG3-204ENST00000585740 GAGE4Q13068 117 aa8.02□□□□□ -1.13
LIG3-204ENST00000585740 GAGE5Q13069 117 aa8.02□□□□□ -1.13
LIG3-204ENST00000585740 GAGE13Q4V321 117 aa8.02□□□□□ -1.13
LIG3-204ENST00000585740 Q9UF83 564 aa8.02□□□□□ -1.13
LIG3-204ENST00000585740 CSDC2Q9Y534 153 aaKnown RBP8.02□□□□□ -1.13
LIG3-204ENST00000585740 A0A0J9YXV3 536 aa8.01□□□□□ -1.13
LIG3-204ENST00000585740 LYRM9A8MSI8 78 aa8.01□□□□□ -1.13
LIG3-204ENST00000585740 J3QQQ9 107 aa8.01□□□□□ -1.13
LIG3-204ENST00000585740 PTTG1IPP53801 180 aa8.01□□□□□ -1.13
LIG3-204ENST00000585740 SCGB1D4Q6XE38 83 aa8.01□□□□□ -1.13
LIG3-204ENST00000585740 HIST1H4GQ99525 98 aa8.01□□□□□ -1.13
LIG3-204ENST00000585740 C9orf118A6NHY6 69 aa8□□□□□ -1.13
LIG3-204ENST00000585740 TIRAPP58753 221 aa8□□□□□ -1.13
LIG3-204ENST00000585740 FHL2Q14192 279 aa8□□□□□ -1.13
LIG3-204ENST00000585740 VAMP3Q15836 100 aa8□□□□□ -1.13
LIG3-204ENST00000585740 Q6ZUT4 128 aa8□□□□□ -1.13
LIG3-204ENST00000585740 SBSPONQ8IVN8 264 aa8□□□□□ -1.13
LIG3-204ENST00000585740 TMEM243Q9BU79 118 aa8□□□□□ -1.13
LIG3-204ENST00000585740 X6R8D5 127 aa8□□□□□ -1.13
LIG3-204ENST00000585740 NOTCH3Q9UM47 2321 aa8□□□□□ -1.13
LIG3-204ENST00000585740 TMEM238LA0A1B0GVL6 79 aa7.99□□□□□ -1.13
LIG3-204ENST00000585740 A6NJY4 79 aa7.99□□□□□ -1.13
LIG3-204ENST00000585740 UBE2L6O14933 153 aa7.99□□□□□ -1.13
LIG3-204ENST00000585740 FXYD2P54710 66 aa7.99□□□□□ -1.13
LIG3-204ENST00000585740 UBE2V1Q13404 147 aa7.99□□□□□ -1.13
LIG3-204ENST00000585740 FAM104AQ969W3 186 aa7.99□□□□□ -1.13
LIG3-204ENST00000585740 SPANXB1Q9NS25 103 aaPredicted RBP7.99□□□□□ -1.13
LIG3-204ENST00000585740 UBE2D1P51668 147 aa7.98□□□□□ -1.13
LIG3-204ENST00000585740 CEMP1Q6PRD7 247 aaPredicted RBP7.98□□□□□ -1.13
LIG3-204ENST00000585740 FAM19A3Q7Z5A8 133 aa7.98□□□□□ -1.13
LIG3-204ENST00000585740 OR5A1Q8NGJ0 315 aa7.98□□□□□ -1.13
LIG3-204ENST00000585740 TMEM101Q96IK0 257 aa7.98□□□□□ -1.13
LIG3-204ENST00000585740 GEMIN7Q9H840 131 aaKnown RBP7.98□□□□□ -1.13
LIG3-204ENST00000585740 IGHV1-58A0A0C4DH39 117 aa7.97□□□□□ -1.13
LIG3-204ENST00000585740 LINC00694P0DN24 101 aa7.97□□□□□ -1.13
LIG3-204ENST00000585740 MIFP14174 115 aa7.97□□□□□ -1.13
LIG3-204ENST00000585740 HERVK_113P63121 156 aa7.97□□□□□ -1.13
LIG3-204ENST00000585740 AMMECR1LQ6DCA0 310 aa7.97□□□□□ -1.13
LIG3-204ENST00000585740 NTM-AS1Q6ZSK4 140 aa7.97□□□□□ -1.13
LIG3-204ENST00000585740 Q6ZVH6 145 aa7.97□□□□□ -1.13
LIG3-204ENST00000585740 TRRAPQ9Y4A5 3859 aa7.97□□□□□ -1.13
LIG3-204ENST00000585740 IGLV5-45A0A087WSX0 123 aa7.96□□□□□ -1.14
LIG3-204ENST00000585740 A0A0J9YY99 117 aa7.96□□□□□ -1.14
LIG3-204ENST00000585740 DEFB130BP0DP73 79 aa7.96□□□□□ -1.14
LIG3-204ENST00000585740 DEFB130AP0DP74 79 aa7.96□□□□□ -1.14
LIG3-204ENST00000585740 TSPEAR-AS2P59090 65 aa7.96□□□□□ -1.14
LIG3-204ENST00000585740 SRSF9Q13242 221 aaKnown RBP eCLIP7.96□□□□□ -1.14
LIG3-204ENST00000585740 NHP2Q9NX24 153 aaKnown RBP7.96□□□□□ -1.14
LIG3-204ENST00000585740 SHISA2Q6UWI4 295 aa7.95□□□□□ -1.14
LIG3-204ENST00000585740 GTF2H5Q6ZYL4 71 aa7.95□□□□□ -1.14
LIG3-204ENST00000585740 PRO0255Q9UI72 69 aa7.95□□□□□ -1.14
LIG3-204ENST00000585740 A0A1B0GWB2 263 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 H3BUT2 72 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 IGHV3-30-3P0DP02 117 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 DEFB135Q30KP9 77 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 C12orf74Q32Q52 190 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 RNASE13Q5GAN3 156 aaKnown RBP7.94□□□□□ -1.14
LIG3-204ENST00000585740 FAM222AQ5U5X8 452 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 RAB37Q96AX2 223 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 RNF183Q96D59 192 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 VSIG2Q96IQ7 327 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 CDC42SE2Q9NRR3 84 aa7.94□□□□□ -1.14
LIG3-204ENST00000585740 TRBV6-8A0A0A6YYG3 113 aa7.93□□□□□ -1.14
LIG3-204ENST00000585740 IGHV4-28A0A0C4DH34 117 aa7.93□□□□□ -1.14
LIG3-204ENST00000585740 LOC100131303A0A0U1RQF7 123 aa7.93□□□□□ -1.14
LIG3-204ENST00000585740 TEX48A0A1B0GUV7 120 aa7.93□□□□□ -1.14
LIG3-204ENST00000585740 TMEM238C9JI98 176 aa7.93□□□□□ -1.14
LIG3-204ENST00000585740 FABP2P12104 132 aa7.93□□□□□ -1.14
LIG3-204ENST00000585740 ATP6V0E2Q8NHE4 81 aa7.93□□□□□ -1.14
LIG3-204ENST00000585740 PRKDCP78527 4128 aaKnown RBP7.93□□□□□ -1.14
LIG3-204ENST00000585740 NOTCH1P46531 2555 aa7.92□□□□□ -1.14
LIG3-204ENST00000585740 A0A1W2PPM0 123 aa7.92□□□□□ -1.14
LIG3-204ENST00000585740 GAGE10A6NGK3 116 aa7.92□□□□□ -1.14
LIG3-204ENST00000585740 CCL25O15444 150 aa7.92□□□□□ -1.14
LIG3-204ENST00000585740 IGHV4-30-4P0DP06 118 aa7.92□□□□□ -1.14
LIG3-204ENST00000585740 GYPEP15421 78 aa7.92□□□□□ -1.14
LIG3-204ENST00000585740 DAD1P61803 113 aa7.92□□□□□ -1.14
LIG3-204ENST00000585740 SAMD5Q5TGI4 173 aa7.92□□□□□ -1.14
LIG3-204ENST00000585740 IGHV3-64A0A075B6Q5 118 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 A8MZ25 164 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 K7EP13 123 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 K7EP34 96 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 PAX4O43316 350 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 IGHV3-30P01768 117 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 SPINK8P0C7L1 97 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 SPART-AS1P0CW21 52 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 IGHV3-30-5P0DP03 117 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 LINC00242Q5T6M2 205 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 ZFAND6Q6FIF0 208 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 Q8NAQ8 132 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 NDUFA12Q9UI09 145 aa7.91□□□□□ -1.14
LIG3-204ENST00000585740 A0A0J9YXY3 114 aa7.9□□□□□ -1.14
LIG3-204ENST00000585740 IGLL5B9A064 214 aa7.9□□□□□ -1.14
LIG3-204ENST00000585740 TIMM17BO60830 172 aa7.9□□□□□ -1.14
LIG3-204ENST00000585740 ATP5G1P05496 136 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms