RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 A0A096LNJ9 63 aa12.4□□□□□ -0.42
RFFL-211ENST00000584541 CRPP02741 224 aa12.4□□□□□ -0.42
RFFL-211ENST00000584541 NPSP0C0P6 89 aa12.4□□□□□ -0.42
RFFL-211ENST00000584541 PAPPA-AS1Q5QFB9 102 aa12.4□□□□□ -0.42
RFFL-211ENST00000584541 ERASQ7Z444 233 aa12.4□□□□□ -0.42
RFFL-211ENST00000584541 FAM19A2Q8N3H0 131 aa12.4□□□□□ -0.42
RFFL-211ENST00000584541 ZNF664Q8N3J9 261 aa12.4□□□□□ -0.42
RFFL-211ENST00000584541 TIMM17AQ99595 171 aa12.4□□□□□ -0.42
RFFL-211ENST00000584541 NUPR1O60356 82 aa12.39□□□□□ -0.43
RFFL-211ENST00000584541 MRPS36P82909 103 aaKnown RBP12.39□□□□□ -0.43
RFFL-211ENST00000584541 Q6ZN92 141 aa12.39□□□□□ -0.43
RFFL-211ENST00000584541 TMEM141Q96I45 108 aa12.39□□□□□ -0.43
RFFL-211ENST00000584541 CDC42SE2Q9NRR3 84 aa12.39□□□□□ -0.43
RFFL-211ENST00000584541 ALMS1Q8TCU4 4167 aa12.38□□□□□ -0.43
RFFL-211ENST00000584541 IGIPA6NJ69 53 aa12.38□□□□□ -0.43
RFFL-211ENST00000584541 IBA57-AS1B1ANH7 110 aa12.38□□□□□ -0.43
RFFL-211ENST00000584541 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.38□□□□□ -0.43
RFFL-211ENST00000584541 ATP5LO75964 103 aa12.38□□□□□ -0.43
RFFL-211ENST00000584541 Q6ZUT4 128 aa12.38□□□□□ -0.43
RFFL-211ENST00000584541 LINC00269Q8N2A0 174 aa12.38□□□□□ -0.43
RFFL-211ENST00000584541 M0R2N4 97 aa12.37□□□□□ -0.43
RFFL-211ENST00000584541 REG3AQ06141 175 aa12.37□□□□□ -0.43
RFFL-211ENST00000584541 PDZD11Q5EBL8 140 aa12.37□□□□□ -0.43
RFFL-211ENST00000584541 UBE2WQ96B02 151 aa12.37□□□□□ -0.43
RFFL-211ENST00000584541 LYSTQ99698 3801 aa12.37□□□□□ -0.43
RFFL-211ENST00000584541 IGLV4-3A0A075B6K6 122 aa12.36□□□□□ -0.43
RFFL-211ENST00000584541 TRAV8-3A0A0A6YYJ7 113 aa12.36□□□□□ -0.43
RFFL-211ENST00000584541 LEPROTL1O95214 131 aa12.36□□□□□ -0.43
RFFL-211ENST00000584541 CLPSL2Q6UWE3 100 aa12.36□□□□□ -0.43
RFFL-211ENST00000584541 OPRPNQ99935 248 aaPredicted RBP12.36□□□□□ -0.43
RFFL-211ENST00000584541 IGKV3OR2-268A0A0C4DH90 116 aa12.35□□□□□ -0.43
RFFL-211ENST00000584541 RNASE13Q5GAN3 156 aaKnown RBP12.35□□□□□ -0.43
RFFL-211ENST00000584541 TEX43Q6ZNM6 134 aa12.35□□□□□ -0.43
RFFL-211ENST00000584541 C2orf88Q9BSF0 95 aa12.35□□□□□ -0.43
RFFL-211ENST00000584541 VCX2Q9H322 139 aa12.35□□□□□ -0.43
RFFL-211ENST00000584541 PRR34Q9NV39 138 aa12.35□□□□□ -0.43
RFFL-211ENST00000584541 HSPB8Q9UJY1 196 aa12.35□□□□□ -0.43
RFFL-211ENST00000584541 MIAQ16674 131 aa12.34□□□□□ -0.43
RFFL-211ENST00000584541 RMI2Q96E14 147 aa12.34□□□□□ -0.43
RFFL-211ENST00000584541 KRTAP1-5Q9BYS1 174 aa12.34□□□□□ -0.43
RFFL-211ENST00000584541 Q9HAA7 133 aa12.34□□□□□ -0.43
RFFL-211ENST00000584541 ENHOQ6UWT2 76 aa12.33□□□□□ -0.44
RFFL-211ENST00000584541 Q6ZR54 194 aa12.33□□□□□ -0.44
RFFL-211ENST00000584541 IFI27L1Q96BM0 104 aa12.33□□□□□ -0.44
RFFL-211ENST00000584541 VPS13DQ5THJ4 4388 aa12.33□□□□□ -0.44
RFFL-211ENST00000584541 TRAV8-4A0A0B4J246 113 aa12.32□□□□□ -0.44
RFFL-211ENST00000584541 IFITM10A6NMD0 228 aa12.32□□□□□ -0.44
RFFL-211ENST00000584541 FABP4P15090 132 aa12.32□□□□□ -0.44
RFFL-211ENST00000584541 S100A2P29034 98 aa12.32□□□□□ -0.44
RFFL-211ENST00000584541 SS18Q15532 418 aa12.32□□□□□ -0.44
RFFL-211ENST00000584541 NFE4Q86UQ8 179 aa12.32□□□□□ -0.44
RFFL-211ENST00000584541 FAM104AQ969W3 186 aa12.32□□□□□ -0.44
RFFL-211ENST00000584541 BAALCQ8WXS3 180 aa12.31□□□□□ -0.44
RFFL-211ENST00000584541 PACRGQ96M98 296 aaPredicted RBP12.31□□□□□ -0.44
RFFL-211ENST00000584541 AMELXQ99217 191 aa12.31□□□□□ -0.44
RFFL-211ENST00000584541 C1orf43Q9BWL3 253 aa12.31□□□□□ -0.44
RFFL-211ENST00000584541 TMA7Q9Y2S6 64 aaKnown RBP12.31□□□□□ -0.44
RFFL-211ENST00000584541 TRAV13-1A0A0B4J241 112 aa12.3□□□□□ -0.44
RFFL-211ENST00000584541 LINC00959A0A1B0GUT2 108 aa12.3□□□□□ -0.44
RFFL-211ENST00000584541 CCL25O15444 150 aa12.3□□□□□ -0.44
RFFL-211ENST00000584541 PRSS1P07477 247 aa12.3□□□□□ -0.44
RFFL-211ENST00000584541 PMVKQ15126 192 aa12.3□□□□□ -0.44
RFFL-211ENST00000584541 KRTAP17-1Q9BYP8 105 aa12.3□□□□□ -0.44
RFFL-211ENST00000584541 SACSQ9NZJ4 4579 aa12.3□□□□□ -0.44
RFFL-211ENST00000584541 IGKV2D-24A0A075B6R9 120 aa12.29□□□□□ -0.44
RFFL-211ENST00000584541 SNRPEP62304 92 aaKnown RBP12.29□□□□□ -0.44
RFFL-211ENST00000584541 C6orf223Q8N319 242 aa12.29□□□□□ -0.44
RFFL-211ENST00000584541 TM2D2Q9BX73 214 aa12.29□□□□□ -0.44
RFFL-211ENST00000584541 COX11Q9Y6N1 276 aa12.29□□□□□ -0.44
RFFL-211ENST00000584541 IGLV10-54A0A075B6I4 117 aa12.28□□□□□ -0.44
RFFL-211ENST00000584541 C1orf134Q5TEV5 83 aa12.28□□□□□ -0.44
RFFL-211ENST00000584541 ZC2HC1BQ5TFG8 222 aa12.28□□□□□ -0.44
RFFL-211ENST00000584541 LINC00173Q6ZV60 143 aa12.28□□□□□ -0.44
RFFL-211ENST00000584541 HIST3H2BBQ8N257 126 aa12.28□□□□□ -0.44
RFFL-211ENST00000584541 MAP1LC3CQ9BXW4 147 aa12.28□□□□□ -0.44
RFFL-211ENST00000584541 DNAH1Q9P2D7 4330 aa12.27□□□□□ -0.44
RFFL-211ENST00000584541 C5orf52A6NGY3 159 aa12.27□□□□□ -0.45
RFFL-211ENST00000584541 CST9LQ9H4G1 147 aa12.27□□□□□ -0.45
RFFL-211ENST00000584541 CHCHD10Q8WYQ3 142 aaPredicted RBP12.26□□□□□ -0.45
RFFL-211ENST00000584541 PRSS29PA6NIE9 313 aa12.25□□□□□ -0.45
RFFL-211ENST00000584541 PSCAO43653 123 aa12.25□□□□□ -0.45
RFFL-211ENST00000584541 UBE2D1P51668 147 aa12.25□□□□□ -0.45
RFFL-211ENST00000584541 SEC11AP67812 179 aa12.25□□□□□ -0.45
RFFL-211ENST00000584541 TRAV12-1A0A0B4J245 112 aa12.24□□□□□ -0.45
RFFL-211ENST00000584541 H0Y8G0 127 aa12.24□□□□□ -0.45
RFFL-211ENST00000584541 XCL1P47992 114 aa12.24□□□□□ -0.45
RFFL-211ENST00000584541 DNAH6Q9C0G6 4158 aa12.24□□□□□ -0.45
RFFL-211ENST00000584541 HIST1H2BLQ99880 126 aa12.23□□□□□ -0.45
RFFL-211ENST00000584541 BIRC6Q9NR09 4857 aa12.22□□□□□ -0.45
RFFL-211ENST00000584541 GAGE12HA6NDE8 117 aa12.22□□□□□ -0.45
RFFL-211ENST00000584541 CD164L2Q6UWJ8 174 aa12.22□□□□□ -0.45
RFFL-211ENST00000584541 GEMIN7Q9H840 131 aaKnown RBP12.22□□□□□ -0.45
RFFL-211ENST00000584541 CHTOPQ9Y3Y2 248 aaKnown RBP12.22□□□□□ -0.45
RFFL-211ENST00000584541 HERVK_113P63121 156 aa12.21□□□□□ -0.45
RFFL-211ENST00000584541 LINC00242Q5T6M2 205 aa12.21□□□□□ -0.45
RFFL-211ENST00000584541 FAM19A3Q7Z5A8 133 aa12.21□□□□□ -0.45
RFFL-211ENST00000584541 RYR2Q92736 4967 aa12.21□□□□□ -0.46
RFFL-211ENST00000584541 A0A0J9YXV3 536 aa12.2□□□□□ -0.46
RFFL-211ENST00000584541 TINCRA0A1B0GVN0 87 aa12.2□□□□□ -0.46
RFFL-211ENST00000584541 KRTDAPP60985 99 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms