RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 ZNF664Q8N3J9 261 aa6.35□□□□□ -1.39
CCDC40-214ENST00000575431 PRSS3P2Q8NHM4 247 aa6.35□□□□□ -1.39
CCDC40-214ENST00000575431 NTN5Q8WTR8 489 aaPredicted RBP6.35□□□□□ -1.39
CCDC40-214ENST00000575431 ALKBH7Q9BT30 221 aaPredicted RBP6.35□□□□□ -1.39
CCDC40-214ENST00000575431 CDC42SE2Q9NRR3 84 aa6.35□□□□□ -1.39
CCDC40-214ENST00000575431 SPANXA1Q9NS26 97 aa6.35□□□□□ -1.39
CCDC40-214ENST00000575431 DNAH6Q9C0G6 4158 aa6.34□□□□□ -1.39
CCDC40-214ENST00000575431 SS18Q15532 418 aa6.34□□□□□ -1.39
CCDC40-214ENST00000575431 SPATA12Q7Z6I5 190 aa6.34□□□□□ -1.39
CCDC40-214ENST00000575431 YPEL4Q96NS1 127 aa6.34□□□□□ -1.39
CCDC40-214ENST00000575431 CYSLTR1Q9Y271 337 aa6.34□□□□□ -1.39
CCDC40-214ENST00000575431 PYGO1Q9Y3Y4 419 aa6.34□□□□□ -1.39
CCDC40-214ENST00000575431 C1orf196B1AJZ1 125 aa6.33□□□□□ -1.4
CCDC40-214ENST00000575431 NPSP0C0P6 89 aa6.33□□□□□ -1.4
CCDC40-214ENST00000575431 MRPS36P82909 103 aaKnown RBP6.33□□□□□ -1.4
CCDC40-214ENST00000575431 Q8N814 137 aa6.33□□□□□ -1.4
CCDC40-214ENST00000575431 MAPKAPK5-AS1Q8N8E1 139 aa6.33□□□□□ -1.4
CCDC40-214ENST00000575431 BAALCQ8WXS3 180 aa6.33□□□□□ -1.4
CCDC40-214ENST00000575431 IGLV10-54A0A075B6I4 117 aa6.32□□□□□ -1.4
CCDC40-214ENST00000575431 LINC00959A0A1B0GUT2 108 aa6.32□□□□□ -1.4
CCDC40-214ENST00000575431 C16orf90A8MZG2 172 aa6.32□□□□□ -1.4
CCDC40-214ENST00000575431 RPL39P62891 51 aaKnown RBP6.32□□□□□ -1.4
CCDC40-214ENST00000575431 PAPPA-AS1Q5QFB9 102 aa6.32□□□□□ -1.4
CCDC40-214ENST00000575431 CFAP161Q6P656 301 aa6.32□□□□□ -1.4
CCDC40-214ENST00000575431 KRTAP26-1Q6PEX3 210 aa6.32□□□□□ -1.4
CCDC40-214ENST00000575431 C2orf66Q6UXQ4 117 aa6.32□□□□□ -1.4
CCDC40-214ENST00000575431 CBLN2Q8IUK8 224 aa6.32□□□□□ -1.4
CCDC40-214ENST00000575431 CHCHD10Q8WYQ3 142 aaPredicted RBP6.32□□□□□ -1.4
CCDC40-214ENST00000575431 IGKV3OR2-268A0A0C4DH90 116 aa6.31□□□□□ -1.4
CCDC40-214ENST00000575431 LINC01546A6NGU7 62 aa6.31□□□□□ -1.4
CCDC40-214ENST00000575431 RAB5BP61020 215 aa6.31□□□□□ -1.4
CCDC40-214ENST00000575431 FA2HQ7L5A8 372 aa6.31□□□□□ -1.4
CCDC40-214ENST00000575431 IGLV5-52A0A0A0MRZ9 124 aa6.3□□□□□ -1.4
CCDC40-214ENST00000575431 GAGE12HA6NDE8 117 aa6.3□□□□□ -1.4
CCDC40-214ENST00000575431 USP17L23D6RBM5 183 aa6.3□□□□□ -1.4
CCDC40-214ENST00000575431 LINC00614P0C842 121 aa6.3□□□□□ -1.4
CCDC40-214ENST00000575431 KRTAP10-2P60368 255 aa6.3□□□□□ -1.4
CCDC40-214ENST00000575431 CD164L2Q6UWJ8 174 aa6.3□□□□□ -1.4
CCDC40-214ENST00000575431 Q6ZN92 141 aa6.3□□□□□ -1.4
CCDC40-214ENST00000575431 C18orf32Q8TCD1 76 aa6.3□□□□□ -1.4
CCDC40-214ENST00000575431 TMEM141Q96I45 108 aa6.3□□□□□ -1.4
CCDC40-214ENST00000575431 LECT2O14960 151 aa6.29□□□□□ -1.4
CCDC40-214ENST00000575431 WFDC2Q14508 124 aa6.29□□□□□ -1.4
CCDC40-214ENST00000575431 Q6ZUT4 128 aa6.29□□□□□ -1.4
CCDC40-214ENST00000575431 ERASQ7Z444 233 aa6.29□□□□□ -1.4
CCDC40-214ENST00000575431 TOMM6Q96B49 74 aa6.29□□□□□ -1.4
CCDC40-214ENST00000575431 TIMM17AQ99595 171 aa6.29□□□□□ -1.4
CCDC40-214ENST00000575431 AP5S1Q9NUS5 200 aa6.29□□□□□ -1.4
CCDC40-214ENST00000575431 IGLV4-3A0A075B6K6 122 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 TRAV13-1A0A0B4J241 112 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 IGIPA6NJ69 53 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 COLCA2A8K830 154 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 S100A1P23297 94 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 GCSHP23434 173 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 XCL1P47992 114 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 FOXI1Q12951 378 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 TEX43Q6ZNM6 134 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 C2orf88Q9BSF0 95 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 VCX2Q9H322 139 aa6.28□□□□□ -1.4
CCDC40-214ENST00000575431 IGHV1-58A0A0C4DH39 117 aa6.27□□□□□ -1.41
CCDC40-214ENST00000575431 IFITM10A6NMD0 228 aa6.27□□□□□ -1.41
CCDC40-214ENST00000575431 SEC11AP67812 179 aa6.27□□□□□ -1.41
CCDC40-214ENST00000575431 RNASE13Q5GAN3 156 aaKnown RBP6.27□□□□□ -1.41
CCDC40-214ENST00000575431 FAM104AQ969W3 186 aa6.27□□□□□ -1.41
CCDC40-214ENST00000575431 SCGB3A1Q96QR1 104 aa6.27□□□□□ -1.41
CCDC40-214ENST00000575431 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.26□□□□□ -1.41
CCDC40-214ENST00000575431 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.26□□□□□ -1.41
CCDC40-214ENST00000575431 hDV102S1A0JD36 115 aa6.26□□□□□ -1.41
CCDC40-214ENST00000575431 COX7A2LO14548 114 aa6.26□□□□□ -1.41
CCDC40-214ENST00000575431 APOMO95445 188 aa6.26□□□□□ -1.41
CCDC40-214ENST00000575431 HBDP02042 147 aa6.26□□□□□ -1.41
CCDC40-214ENST00000575431 TRGC2P03986 189 aa6.26□□□□□ -1.41
CCDC40-214ENST00000575431 MALP21145 153 aa6.26□□□□□ -1.41
CCDC40-214ENST00000575431 CHCHD1Q96BP2 118 aaKnown RBP6.26□□□□□ -1.41
CCDC40-214ENST00000575431 AMELXQ99217 191 aa6.26□□□□□ -1.41
CCDC40-214ENST00000575431 OPRPNQ99935 248 aaPredicted RBP6.26□□□□□ -1.41
CCDC40-214ENST00000575431 EPPK1P58107 5090 aaKnown RBP6.25□□□□□ -1.41
CCDC40-214ENST00000575431 GVQW2A0A096LPI5 108 aaPredicted RBP6.25□□□□□ -1.41
CCDC40-214ENST00000575431 CDK2AP2O75956 126 aa6.25□□□□□ -1.41
CCDC40-214ENST00000575431 PRSS1P07477 247 aa6.25□□□□□ -1.41
CCDC40-214ENST00000575431 DNAH10Q8IVF4 4471 aa6.25□□□□□ -1.41
CCDC40-214ENST00000575431 IGHV3OR16-9A0A0B4J2B5 98 aa6.24□□□□□ -1.41
CCDC40-214ENST00000575431 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.24□□□□□ -1.41
CCDC40-214ENST00000575431 ATP5LO75964 103 aa6.24□□□□□ -1.41
CCDC40-214ENST00000575431 UBE2D1P51668 147 aa6.24□□□□□ -1.41
CCDC40-214ENST00000575431 CNBPP62633 177 aaKnown RBP6.24□□□□□ -1.41
CCDC40-214ENST00000575431 FAM19A3Q7Z5A8 133 aa6.24□□□□□ -1.41
CCDC40-214ENST00000575431 BAGE3Q86Y29 109 aa6.24□□□□□ -1.41
CCDC40-214ENST00000575431 C15orf56Q8N910 161 aa6.24□□□□□ -1.41
CCDC40-214ENST00000575431 C9orf163Q8N9P6 203 aa6.24□□□□□ -1.41
CCDC40-214ENST00000575431 URB1-AS1Q96HZ7 61 aa6.24□□□□□ -1.41
CCDC40-214ENST00000575431 DNAH2Q9P225 4427 aa6.23□□□□□ -1.41
CCDC40-214ENST00000575431 F8WDY8 70 aa6.23□□□□□ -1.41
CCDC40-214ENST00000575431 ZNF561-AS1K7EIQ3 104 aa6.23□□□□□ -1.41
CCDC40-214ENST00000575431 HSBP1O75506 76 aa6.23□□□□□ -1.41
CCDC40-214ENST00000575431 LINC00242Q5T6M2 205 aa6.23□□□□□ -1.41
CCDC40-214ENST00000575431 LINC01561Q8N1V8 128 aa6.23□□□□□ -1.41
CCDC40-214ENST00000575431 PKIGQ9Y2B9 76 aa6.23□□□□□ -1.41
CCDC40-214ENST00000575431 DNAH17Q9UFH2 4485 aa6.23□□□□□ -1.41
CCDC40-214ENST00000575431 SCO1O75880 301 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms