RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 IGKV3OR2-268A0A0C4DH90 116 aa5.31□□□□□ -1.56
VPS53-214ENST00000572607 IGKV2-29A2NJV5 120 aaPredicted RBP5.31□□□□□ -1.56
VPS53-214ENST00000572607 PPP1R2P9O14990 202 aa5.31□□□□□ -1.56
VPS53-214ENST00000572607 ZNF25P17030 456 aaPredicted RBP5.31□□□□□ -1.56
VPS53-214ENST00000572607 FCER1GP30273 86 aa5.31□□□□□ -1.56
VPS53-214ENST00000572607 CAMPP49913 170 aa5.31□□□□□ -1.56
VPS53-214ENST00000572607 RNF185Q96GF1 192 aa5.31□□□□□ -1.56
VPS53-214ENST00000572607 KRTAP3-1Q9BYR8 98 aa5.31□□□□□ -1.56
VPS53-214ENST00000572607 DNAH8Q96JB1 4490 aa5.31□□□□□ -1.56
VPS53-214ENST00000572607 UBR4Q5T4S7 5183 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 SMIM27A0A1W2PRY6 76 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 F8W036 122 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 VCYO14598 125 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 SMR3BP02814 79 aaPredicted RBP5.3□□□□□ -1.56
VPS53-214ENST00000572607 FGF6P10767 208 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 HAMPP81172 84 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 SMAGPQ0VAQ4 97 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 Q5VSD8 79 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 CLRN3Q8NCR9 226 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 OR5A1Q8NGJ0 315 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 KIR2DL4Q99706 377 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 TMEM242Q9NWH2 141 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 FLG2Q5D862 2391 aaPredicted RBP5.3□□□□□ -1.56
VPS53-214ENST00000572607 HMCN2Q8NDA2 5059 aa5.3□□□□□ -1.56
VPS53-214ENST00000572607 hDV102S1A0JD36 115 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 C7orf77A4D0Y5 90 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 LINC00862A6NCI5 91 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 SMKR1H3BMG3 65 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 GAS8-AS1O95177 125 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 CKS2P33552 79 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 SUMO2P61956 95 aaKnown RBP5.29□□□□□ -1.56
VPS53-214ENST00000572607 HBBP68871 147 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 PNRC1Q12796 327 aaPredicted RBP5.29□□□□□ -1.56
VPS53-214ENST00000572607 LINC01620Q4KN68 170 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 FAM104BQ5XKR9 115 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 DGAT2L7PQ6IED9 249 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 MRPL54Q6P161 138 aaKnown RBP5.29□□□□□ -1.56
VPS53-214ENST00000572607 CFAP161Q6P656 301 aa5.29□□□□□ -1.56
VPS53-214ENST00000572607 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.28□□□□□ -1.56
VPS53-214ENST00000572607 TRBV27A0A0K0K1C4 114 aa5.28□□□□□ -1.56
VPS53-214ENST00000572607 GAGE12HA6NDE8 117 aa5.28□□□□□ -1.56
VPS53-214ENST00000572607 TSHBP01222 138 aa5.28□□□□□ -1.56
VPS53-214ENST00000572607 PRSS1P07477 247 aa5.28□□□□□ -1.56
VPS53-214ENST00000572607 INAFM2P0DMQ5 153 aa5.28□□□□□ -1.56
VPS53-214ENST00000572607 ESDP10768 282 aa5.28□□□□□ -1.56
VPS53-214ENST00000572607 RPS10P46783 165 aaKnown RBP5.28□□□□□ -1.56
VPS53-214ENST00000572607 POLR2KP53803 58 aaKnown RBP5.28□□□□□ -1.56
VPS53-214ENST00000572607 MRPL51Q4U2R6 128 aaKnown RBP5.28□□□□□ -1.56
VPS53-214ENST00000572607 Q6ZSA8 131 aa5.28□□□□□ -1.56
VPS53-214ENST00000572607 TMEM18Q96B42 140 aa5.28□□□□□ -1.56
VPS53-214ENST00000572607 FAM30AQ9NZY2 134 aa5.28□□□□□ -1.56
VPS53-214ENST00000572607 TCAPO15273 167 aa5.27□□□□□ -1.57
VPS53-214ENST00000572607 MT-ND4LP03901 98 aa5.27□□□□□ -1.57
VPS53-214ENST00000572607 SS18Q15532 418 aa5.27□□□□□ -1.57
VPS53-214ENST00000572607 CLLU1Q5K131 121 aa5.27□□□□□ -1.57
VPS53-214ENST00000572607 KRTAP26-1Q6PEX3 210 aa5.27□□□□□ -1.57
VPS53-214ENST00000572607 ATP5L2Q7Z4Y8 100 aa5.27□□□□□ -1.57
VPS53-214ENST00000572607 ANAPC16Q96DE5 110 aa5.27□□□□□ -1.57
VPS53-214ENST00000572607 C20orf78Q9BR46 151 aa5.27□□□□□ -1.57
VPS53-214ENST00000572607 KRTAP9-8Q9BYQ0 159 aa5.27□□□□□ -1.57
VPS53-214ENST00000572607 SRRM2Q9UQ35 2752 aaKnown RBP5.27□□□□□ -1.57
VPS53-214ENST00000572607 PPBPP02775 128 aa5.26□□□□□ -1.57
VPS53-214ENST00000572607 SCXQ7RTU7 201 aa5.26□□□□□ -1.57
VPS53-214ENST00000572607 MRPL52Q86TS9 123 aaKnown RBP5.26□□□□□ -1.57
VPS53-214ENST00000572607 NRACQ8N912 160 aa5.26□□□□□ -1.57
VPS53-214ENST00000572607 CHCHD10Q8WYQ3 142 aaPredicted RBP5.26□□□□□ -1.57
VPS53-214ENST00000572607 CHAC1Q9BUX1 264 aa5.26□□□□□ -1.57
VPS53-214ENST00000572607 TRBV24-1A0A075B6N3 115 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 IGHV3-64A0A075B6Q5 118 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 A0A1B0GXF2 115 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 D6R8Y8 96 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 TNFRSF6BO95407 300 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 XCL1P47992 114 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 CNBPP62633 177 aaKnown RBP5.25□□□□□ -1.57
VPS53-214ENST00000572607 UQCC3Q6UW78 93 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 ORMDL3Q8N138 153 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 ZNF664Q8N3J9 261 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 C9orf163Q8N9P6 203 aa5.25□□□□□ -1.57
VPS53-214ENST00000572607 LINC00959A0A1B0GUT2 108 aa5.24□□□□□ -1.57
VPS53-214ENST00000572607 PHOX2AO14813 284 aa5.24□□□□□ -1.57
VPS53-214ENST00000572607 CCL25O15444 150 aa5.24□□□□□ -1.57
VPS53-214ENST00000572607 RAB5AP20339 215 aa5.24□□□□□ -1.57
VPS53-214ENST00000572607 RPL32P62910 135 aaKnown RBP5.24□□□□□ -1.57
VPS53-214ENST00000572607 TMEM136Q6ZRR5 245 aa5.24□□□□□ -1.57
VPS53-214ENST00000572607 SMIM2Q9BVW6 85 aa5.24□□□□□ -1.57
VPS53-214ENST00000572607 CDC42SE2Q9NRR3 84 aa5.24□□□□□ -1.57
VPS53-214ENST00000572607 PKIGQ9Y2B9 76 aa5.24□□□□□ -1.57
VPS53-214ENST00000572607 FAT3Q8TDW7 4589 aa5.24□□□□□ -1.57
VPS53-214ENST00000572607 LRP1Q07954 4544 aaKnown RBP5.24□□□□□ -1.57
VPS53-214ENST00000572607 IGHV1-58A0A0C4DH39 117 aa5.23□□□□□ -1.57
VPS53-214ENST00000572607 MALP21145 153 aa5.23□□□□□ -1.57
VPS53-214ENST00000572607 FOXI1Q12951 378 aa5.23□□□□□ -1.57
VPS53-214ENST00000572607 HIGD2BQ4VC39 106 aa5.23□□□□□ -1.57
VPS53-214ENST00000572607 CIRBP-AS1Q8TBR5 109 aa5.23□□□□□ -1.57
VPS53-214ENST00000572607 DPH3Q96FX2 82 aa5.23□□□□□ -1.57
VPS53-214ENST00000572607 PRELID3AQ96N28 172 aa5.23□□□□□ -1.57
VPS53-214ENST00000572607 LAMTOR2Q9Y2Q5 125 aa5.23□□□□□ -1.57
VPS53-214ENST00000572607 UBE2D4Q9Y2X8 147 aa5.23□□□□□ -1.57
VPS53-214ENST00000572607 CSDC2Q9Y534 153 aaKnown RBP5.23□□□□□ -1.57
VPS53-214ENST00000572607 GVQW2A0A096LPI5 108 aaPredicted RBP5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms