RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 DAND5Q8N907 189 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 MAP6D1Q9H9H5 199 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 GAGE12JA6NER3 117 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 GAGE7O76087 117 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 GAGE12FP0CL80 117 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 GAGE12GP0CL81 117 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 GAGE12IP0CL82 117 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 GAGE4Q13068 117 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 Q6YL49 198 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 Q9H8V8 135 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 BEAN1Q3B7T3 259 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 MEIG1Q5JSS6 88 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 Q9UF83 564 aa7.8□□□□□ -1.16
CCDC40-207ENST00000572253 IGLV5-45A0A087WSX0 123 aa7.79□□□□□ -1.16
CCDC40-207ENST00000572253 FAM240AA0A1B0GVK7 77 aa7.79□□□□□ -1.16
CCDC40-207ENST00000572253 Q6ZSV7 163 aa7.79□□□□□ -1.16
CCDC40-207ENST00000572253 CITED2Q99967 270 aaPredicted RBP7.79□□□□□ -1.16
CCDC40-207ENST00000572253 CRLF1O75462 422 aa7.79□□□□□ -1.16
CCDC40-207ENST00000572253 RPL36AP83881 106 aaKnown RBP7.79□□□□□ -1.16
CCDC40-207ENST00000572253 RPL36ALQ969Q0 106 aaKnown RBP7.79□□□□□ -1.16
CCDC40-207ENST00000572253 C11orf72Q8NBR9 251 aa7.78□□□□□ -1.16
CCDC40-207ENST00000572253 LINC00308Q8TCZ7 52 aa7.78□□□□□ -1.16
CCDC40-207ENST00000572253 NRGNQ92686 78 aa7.78□□□□□ -1.16
CCDC40-207ENST00000572253 C9orf153Q5TBE3 101 aa7.78□□□□□ -1.16
CCDC40-207ENST00000572253 IGHV3OR16-12A0A075B7B8 117 aa7.78□□□□□ -1.16
CCDC40-207ENST00000572253 TRGV1A0A0A0MS02 117 aa7.78□□□□□ -1.16
CCDC40-207ENST00000572253 A0A0U1RRA0 63 aa7.78□□□□□ -1.16
CCDC40-207ENST00000572253 PRIMA1Q86XR5 153 aa7.78□□□□□ -1.16
CCDC40-207ENST00000572253 MAPK1IP1LQ8NDC0 245 aa7.78□□□□□ -1.16
CCDC40-207ENST00000572253 ZNF625Q96I27 306 aaPredicted RBP7.78□□□□□ -1.16
CCDC40-207ENST00000572253 C1orf43Q9BWL3 253 aa7.77□□□□□ -1.17
CCDC40-207ENST00000572253 XCL2Q9UBD3 114 aa7.77□□□□□ -1.17
CCDC40-207ENST00000572253 TRAV13-1A0A0B4J241 112 aa7.77□□□□□ -1.17
CCDC40-207ENST00000572253 C18orf65Q6ZTR6 163 aa7.77□□□□□ -1.17
CCDC40-207ENST00000572253 STHQ8IWL8 128 aa7.77□□□□□ -1.17
CCDC40-207ENST00000572253 C4orf3Q8WVX3 66 aa7.77□□□□□ -1.17
CCDC40-207ENST00000572253 IGLV5-39A0A0G2JS06 123 aa7.77□□□□□ -1.17
CCDC40-207ENST00000572253 COX7A2LO14548 114 aa7.77□□□□□ -1.17
CCDC40-207ENST00000572253 DEFB121Q5J5C9 76 aa7.76□□□□□ -1.17
CCDC40-207ENST00000572253 SVEP1Q4LDE5 3571 aa7.76□□□□□ -1.17
CCDC40-207ENST00000572253 ACYP1P07311 99 aa7.76□□□□□ -1.17
CCDC40-207ENST00000572253 LINC00242Q5T6M2 205 aa7.76□□□□□ -1.17
CCDC40-207ENST00000572253 C3orf56Q8N813 242 aa7.76□□□□□ -1.17
CCDC40-207ENST00000572253 TRBV10-1A0A0K0K1A3 114 aa7.76□□□□□ -1.17
CCDC40-207ENST00000572253 COX6A2Q02221 97 aa7.76□□□□□ -1.17
CCDC40-207ENST00000572253 DEFB114Q30KQ6 69 aa7.76□□□□□ -1.17
CCDC40-207ENST00000572253 NHLRC4P0CG21 123 aaPredicted RBP7.75□□□□□ -1.17
CCDC40-207ENST00000572253 DAZ2Q13117 558 aaKnown RBP7.75□□□□□ -1.17
CCDC40-207ENST00000572253 DAZ4Q86SG3 579 aaKnown RBP7.75□□□□□ -1.17
CCDC40-207ENST00000572253 DAZ3Q9NR90 486 aaKnown RBP7.75□□□□□ -1.17
CCDC40-207ENST00000572253 NACAE9PAV3 2078 aa7.75□□□□□ -1.17
CCDC40-207ENST00000572253 UBE2L6O14933 153 aa7.75□□□□□ -1.17
CCDC40-207ENST00000572253 DOPEY1Q5JWR5 2465 aa7.75□□□□□ -1.17
CCDC40-207ENST00000572253 K7EQD1 137 aa7.75□□□□□ -1.17
CCDC40-207ENST00000572253 CSDC2Q9Y534 153 aaKnown RBP7.74□□□□□ -1.17
CCDC40-207ENST00000572253 LRRK2Q5S007 2527 aa7.74□□□□□ -1.17
CCDC40-207ENST00000572253 SMIM1B2RUZ4 78 aa7.74□□□□□ -1.17
CCDC40-207ENST00000572253 FSHBP01225 129 aa7.73□□□□□ -1.17
CCDC40-207ENST00000572253 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.73□□□□□ -1.17
CCDC40-207ENST00000572253 A0A096LNT2 108 aa7.73□□□□□ -1.17
CCDC40-207ENST00000572253 TRAV25A0A0B4J276 109 aa7.73□□□□□ -1.17
CCDC40-207ENST00000572253 TRACP01848 142 aa7.73□□□□□ -1.17
CCDC40-207ENST00000572253 JMJD1CQ15652 2540 aa7.73□□□□□ -1.17
CCDC40-207ENST00000572253 HIVEP2P31629 2446 aa7.73□□□□□ -1.17
CCDC40-207ENST00000572253 FAM19A3Q7Z5A8 133 aa7.72□□□□□ -1.17
CCDC40-207ENST00000572253 Q8N2B8 174 aa7.72□□□□□ -1.17
CCDC40-207ENST00000572253 LINC00694P0DN24 101 aa7.72□□□□□ -1.17
CCDC40-207ENST00000572253 IGHV4-31P0DP07 118 aa7.72□□□□□ -1.17
CCDC40-207ENST00000572253 TMEM243Q9BU79 118 aa7.72□□□□□ -1.17
CCDC40-207ENST00000572253 CCDC179H3BU77 68 aa7.71□□□□□ -1.17
CCDC40-207ENST00000572253 TRAV13-2A0A0B4J235 113 aa7.71□□□□□ -1.18
CCDC40-207ENST00000572253 BAALC-AS2P0C853 105 aa7.71□□□□□ -1.18
CCDC40-207ENST00000572253 SHISA2Q6UWI4 295 aa7.71□□□□□ -1.18
CCDC40-207ENST00000572253 CRPP02741 224 aa7.71□□□□□ -1.18
CCDC40-207ENST00000572253 CDC42SE2Q9NRR3 84 aa7.71□□□□□ -1.18
CCDC40-207ENST00000572253 PF4P02776 101 aa7.7□□□□□ -1.18
CCDC40-207ENST00000572253 ODF3L2Q3SX64 289 aa7.7□□□□□ -1.18
CCDC40-207ENST00000572253 ABCA12Q86UK0 2595 aa7.7□□□□□ -1.18
CCDC40-207ENST00000572253 TRBV7-7A0A0K0K1E9 115 aa7.7□□□□□ -1.18
CCDC40-207ENST00000572253 Q6ZTI0 123 aa7.7□□□□□ -1.18
CCDC40-207ENST00000572253 C1orf158Q8N1D5 194 aa7.7□□□□□ -1.18
CCDC40-207ENST00000572253 INAFM2P0DMQ5 153 aa7.7□□□□□ -1.18
CCDC40-207ENST00000572253 SOSTDC1Q6X4U4 206 aa7.7□□□□□ -1.18
CCDC40-207ENST00000572253 OVOL2Q9BRP0 275 aa7.7□□□□□ -1.18
CCDC40-207ENST00000572253 NDUFA7O95182 113 aa7.69□□□□□ -1.18
CCDC40-207ENST00000572253 IMUPQ9GZP8 106 aa7.69□□□□□ -1.18
CCDC40-207ENST00000572253 PPDPFQ9H3Y8 114 aa7.69□□□□□ -1.18
CCDC40-207ENST00000572253 MAP1AP78559 2803 aaPredicted RBP7.69□□□□□ -1.18
CCDC40-207ENST00000572253 TRGV2A0A075B6R0 118 aa7.69□□□□□ -1.18
CCDC40-207ENST00000572253 HIST2H2BCQ6DN03 193 aa7.69□□□□□ -1.18
CCDC40-207ENST00000572253 HIST2H2BDQ6DRA6 164 aa7.69□□□□□ -1.18
CCDC40-207ENST00000572253 NTM-AS1Q6ZSK4 140 aa7.69□□□□□ -1.18
CCDC40-207ENST00000572253 LINC00643Q86TS7 51 aa7.69□□□□□ -1.18
CCDC40-207ENST00000572253 PKD1L2Q7Z442 2459 aa7.68□□□□□ -1.18
CCDC40-207ENST00000572253 CELSR1Q9NYQ6 3014 aa7.68□□□□□ -1.18
CCDC40-207ENST00000572253 CMC4P56277 68 aaPredicted RBP7.68□□□□□ -1.18
CCDC40-207ENST00000572253 FAM222AQ5U5X8 452 aa7.68□□□□□ -1.18
CCDC40-207ENST00000572253 IL17DQ8TAD2 202 aa7.68□□□□□ -1.18
CCDC40-207ENST00000572253 F5H768 121 aa7.68□□□□□ -1.18
CCDC40-207ENST00000572253 TOMM7Q9P0U1 55 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms