RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PRR34Q9NV39 138 aa13.82□□□□□ -0.2
VPS53-210ENST00000571456 UBR4Q5T4S7 5183 aa13.81□□□□□ -0.2
VPS53-210ENST00000571456 ORMDL2Q53FV1 153 aa13.81□□□□□ -0.2
VPS53-210ENST00000571456 TIMM21Q9BVV7 248 aa13.81□□□□□ -0.2
VPS53-210ENST00000571456 SRRM2Q9UQ35 2752 aaKnown RBP13.8□□□□□ -0.2
VPS53-210ENST00000571456 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.8□□□□□ -0.2
VPS53-210ENST00000571456 IGKV2-29A2NJV5 120 aaPredicted RBP13.8□□□□□ -0.2
VPS53-210ENST00000571456 RNASEKQ6P5S7 137 aaKnown RBP13.8□□□□□ -0.2
VPS53-210ENST00000571456 Q6ZRN7 208 aaPredicted RBP13.8□□□□□ -0.2
VPS53-210ENST00000571456 DEFB104AQ8WTQ1 72 aa13.8□□□□□ -0.2
VPS53-210ENST00000571456 UBE2WQ96B02 151 aa13.8□□□□□ -0.2
VPS53-210ENST00000571456 TRAV8-4A0A0B4J246 113 aa13.79□□□□□ -0.2
VPS53-210ENST00000571456 LOC389332A0A1B0GUA5 103 aa13.79□□□□□ -0.2
VPS53-210ENST00000571456 DGAT2L7PQ6IED9 249 aa13.79□□□□□ -0.2
VPS53-210ENST00000571456 DNAH5Q8TE73 4624 aa13.79□□□□□ -0.2
VPS53-210ENST00000571456 LINC01549A6NIU2 74 aa13.78□□□□□ -0.2
VPS53-210ENST00000571456 OR5A1Q8NGJ0 315 aa13.78□□□□□ -0.2
VPS53-210ENST00000571456 PRSS3P2Q8NHM4 247 aa13.78□□□□□ -0.2
VPS53-210ENST00000571456 Q9HAA7 133 aa13.78□□□□□ -0.2
VPS53-210ENST00000571456 PSCAO43653 123 aa13.77□□□□□ -0.21
VPS53-210ENST00000571456 REG3AQ06141 175 aa13.77□□□□□ -0.21
VPS53-210ENST00000571456 LINC00269Q8N2A0 174 aa13.77□□□□□ -0.21
VPS53-210ENST00000571456 C1orf43Q9BWL3 253 aa13.77□□□□□ -0.21
VPS53-210ENST00000571456 SPANXA1Q9NS26 97 aa13.77□□□□□ -0.21
VPS53-210ENST00000571456 IGLV4-60A0A075B6I1 120 aa13.76□□□□□ -0.21
VPS53-210ENST00000571456 ENHOQ6UWT2 76 aa13.76□□□□□ -0.21
VPS53-210ENST00000571456 IFI27P40305 119 aaPredicted RBP13.75□□□□□ -0.21
VPS53-210ENST00000571456 UBE2D4Q9Y2X8 147 aa13.75□□□□□ -0.21
VPS53-210ENST00000571456 LINC01546A6NGU7 62 aa13.74□□□□□ -0.21
VPS53-210ENST00000571456 EREGO14944 169 aa13.74□□□□□ -0.21
VPS53-210ENST00000571456 CCL25O15444 150 aa13.74□□□□□ -0.21
VPS53-210ENST00000571456 NPSP0C0P6 89 aa13.74□□□□□ -0.21
VPS53-210ENST00000571456 RAB5BP61020 215 aa13.74□□□□□ -0.21
VPS53-210ENST00000571456 CYSLTR1Q9Y271 337 aa13.74□□□□□ -0.21
VPS53-210ENST00000571456 PYGO1Q9Y3Y4 419 aa13.74□□□□□ -0.21
VPS53-210ENST00000571456 IGKV2D-24A0A075B6R9 120 aa13.73□□□□□ -0.21
VPS53-210ENST00000571456 COLCA2A8K830 154 aa13.73□□□□□ -0.21
VPS53-210ENST00000571456 ZNF664Q8N3J9 261 aa13.73□□□□□ -0.21
VPS53-210ENST00000571456 CDC42SE2Q9NRR3 84 aa13.73□□□□□ -0.21
VPS53-210ENST00000571456 MRPS36P82909 103 aaKnown RBP13.72□□□□□ -0.21
VPS53-210ENST00000571456 FA2HQ7L5A8 372 aa13.72□□□□□ -0.21
VPS53-210ENST00000571456 C18orf32Q8TCD1 76 aa13.72□□□□□ -0.21
VPS53-210ENST00000571456 ATP6V1G1O75348 118 aa13.7□□□□□ -0.22
VPS53-210ENST00000571456 TNP2Q05952 138 aa13.7□□□□□ -0.22
VPS53-210ENST00000571456 C2orf66Q6UXQ4 117 aa13.7□□□□□ -0.22
VPS53-210ENST00000571456 AP5S1Q9NUS5 200 aa13.7□□□□□ -0.22
VPS53-210ENST00000571456 RPL39P62891 51 aaKnown RBP13.69□□□□□ -0.22
VPS53-210ENST00000571456 MYCBP2O75592 4640 aa13.68□□□□□ -0.22
VPS53-210ENST00000571456 LINC00614P0C842 121 aa13.68□□□□□ -0.22
VPS53-210ENST00000571456 PAPPA-AS1Q5QFB9 102 aa13.68□□□□□ -0.22
VPS53-210ENST00000571456 TRGC2P03986 189 aa13.67□□□□□ -0.22
VPS53-210ENST00000571456 CLPSL2Q6UWE3 100 aa13.67□□□□□ -0.22
VPS53-210ENST00000571456 A0A087WTM6 91 aa13.66□□□□□ -0.22
VPS53-210ENST00000571456 SS18Q15532 418 aa13.66□□□□□ -0.22
VPS53-210ENST00000571456 TOMM6Q96B49 74 aa13.66□□□□□ -0.22
VPS53-210ENST00000571456 FLG2Q5D862 2391 aaPredicted RBP13.66□□□□□ -0.22
VPS53-210ENST00000571456 C1orf196B1AJZ1 125 aa13.65□□□□□ -0.22
VPS53-210ENST00000571456 SCO1O75880 301 aa13.65□□□□□ -0.22
VPS53-210ENST00000571456 INAFM2P0DMQ5 153 aa13.65□□□□□ -0.22
VPS53-210ENST00000571456 C14orf177Q52M58 125 aa13.65□□□□□ -0.22
VPS53-210ENST00000571456 Q6ZN92 141 aa13.65□□□□□ -0.22
VPS53-210ENST00000571456 CHCHD1Q96BP2 118 aaKnown RBP13.65□□□□□ -0.22
VPS53-210ENST00000571456 TIMM17AQ99595 171 aa13.65□□□□□ -0.22
VPS53-210ENST00000571456 LINC00959A0A1B0GUT2 108 aa13.64□□□□□ -0.23
VPS53-210ENST00000571456 LRCOL1A6NCL2 159 aa13.64□□□□□ -0.23
VPS53-210ENST00000571456 EPM2AB3EWF7 344 aa13.64□□□□□ -0.23
VPS53-210ENST00000571456 TMEM141Q96I45 108 aa13.64□□□□□ -0.23
VPS53-210ENST00000571456 Q6ZUT4 128 aa13.63□□□□□ -0.23
VPS53-210ENST00000571456 ERASQ7Z444 233 aa13.63□□□□□ -0.23
VPS53-210ENST00000571456 IGIPA6NJ69 53 aa13.62□□□□□ -0.23
VPS53-210ENST00000571456 CDPF1Q6NVV7 123 aa13.62□□□□□ -0.23
VPS53-210ENST00000571456 KRTAP26-1Q6PEX3 210 aa13.62□□□□□ -0.23
VPS53-210ENST00000571456 CHCHD10Q8WYQ3 142 aaPredicted RBP13.62□□□□□ -0.23
VPS53-210ENST00000571456 IGLV10-54A0A075B6I4 117 aa13.61□□□□□ -0.23
VPS53-210ENST00000571456 IGLV4-3A0A075B6K6 122 aa13.61□□□□□ -0.23
VPS53-210ENST00000571456 IGKV3OR2-268A0A0C4DH90 116 aa13.61□□□□□ -0.23
VPS53-210ENST00000571456 TEX43Q6ZNM6 134 aa13.61□□□□□ -0.23
VPS53-210ENST00000571456 NTN5Q8WTR8 489 aaPredicted RBP13.61□□□□□ -0.23
VPS53-210ENST00000571456 C2orf88Q9BSF0 95 aa13.61□□□□□ -0.23
VPS53-210ENST00000571456 PGPEP1Q9NXJ5 209 aa13.61□□□□□ -0.23
VPS53-210ENST00000571456 CD164L2Q6UWJ8 174 aa13.6□□□□□ -0.23
VPS53-210ENST00000571456 HBDP02042 147 aa13.59□□□□□ -0.23
VPS53-210ENST00000571456 CFAP161Q6P656 301 aa13.59□□□□□ -0.23
VPS53-210ENST00000571456 BAGE3Q86Y29 109 aa13.59□□□□□ -0.23
VPS53-210ENST00000571456 FAM104AQ969W3 186 aa13.59□□□□□ -0.23
VPS53-210ENST00000571456 SCGB3A1Q96QR1 104 aa13.59□□□□□ -0.23
VPS53-210ENST00000571456 VCX2Q9H322 139 aa13.59□□□□□ -0.23
VPS53-210ENST00000571456 IFITM10A6NMD0 228 aa13.58□□□□□ -0.24
VPS53-210ENST00000571456 Q8N814 137 aa13.58□□□□□ -0.24
VPS53-210ENST00000571456 BAALCQ8WXS3 180 aa13.58□□□□□ -0.24
VPS53-210ENST00000571456 URB1-AS1Q96HZ7 61 aa13.58□□□□□ -0.24
VPS53-210ENST00000571456 GAGE12HA6NDE8 117 aa13.57□□□□□ -0.24
VPS53-210ENST00000571456 AMELXQ99217 191 aa13.57□□□□□ -0.24
VPS53-210ENST00000571456 TRAV13-1A0A0B4J241 112 aa13.56□□□□□ -0.24
VPS53-210ENST00000571456 SEC11AP67812 179 aa13.56□□□□□ -0.24
VPS53-210ENST00000571456 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.55□□□□□ -0.24
VPS53-210ENST00000571456 HSBP1O75506 76 aa13.55□□□□□ -0.24
VPS53-210ENST00000571456 XCL1P47992 114 aa13.55□□□□□ -0.24
VPS53-210ENST00000571456 RNASE13Q5GAN3 156 aaKnown RBP13.55□□□□□ -0.24
VPS53-210ENST00000571456 SPATA12Q7Z6I5 190 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms