RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 BAALCQ8WXS3 180 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 MUC4Q99102 2169 aa5.64□□□□□ -1.51
VPS39-213ENST00000570062 GAGE12JA6NER3 117 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 DLEU1O43261 78 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 IGLC3P0DOY3 106 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 DEFA6Q01524 100 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 GAGE1Q13065 139 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 GAGE4Q13068 117 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 GAGE5Q13069 117 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 MRPL23Q16540 153 aaKnown RBP5.63□□□□□ -1.51
VPS39-213ENST00000570062 GAGE13Q4V321 117 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 LBHQ53QV2 105 aaPredicted RBP5.63□□□□□ -1.51
VPS39-213ENST00000570062 NEGR1Q7Z3B1 354 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 ATP6V0E2Q8NHE4 81 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 TMEM243Q9BU79 118 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 CST9LQ9H4G1 147 aa5.63□□□□□ -1.51
VPS39-213ENST00000570062 TRBV6-8A0A0A6YYG3 113 aa5.62□□□□□ -1.51
VPS39-213ENST00000570062 SIVA1O15304 175 aa5.62□□□□□ -1.51
VPS39-213ENST00000570062 CCL25O15444 150 aa5.62□□□□□ -1.51
VPS39-213ENST00000570062 AMMECR1LQ6DCA0 310 aa5.62□□□□□ -1.51
VPS39-213ENST00000570062 SLC25A34Q6PIV7 304 aa5.62□□□□□ -1.51
VPS39-213ENST00000570062 PHLDA1Q8WV24 401 aaPredicted RBP5.62□□□□□ -1.51
VPS39-213ENST00000570062 CHCHD7Q9BUK0 85 aa5.62□□□□□ -1.51
VPS39-213ENST00000570062 MRPL35Q9NZE8 188 aaKnown RBP5.62□□□□□ -1.51
VPS39-213ENST00000570062 UBE2D4Q9Y2X8 147 aa5.62□□□□□ -1.51
VPS39-213ENST00000570062 MGAM2Q2M2H8 2515 aa5.62□□□□□ -1.51
VPS39-213ENST00000570062 IGLV4-3A0A075B6K6 122 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 LINC00694P0DN24 101 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 COX8AP10176 69 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 GYPEP15421 78 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 TIRAPP58753 221 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 RPL39P62891 51 aaKnown RBP5.61□□□□□ -1.51
VPS39-213ENST00000570062 NFE4Q86UQ8 179 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 BOD1L2Q8IYS8 172 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 ATOH7Q8N100 152 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 OR5A1Q8NGJ0 315 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 AMELXQ99217 191 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 PRO1933Q9H354 126 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 MRPS16Q9Y3D3 137 aaKnown RBP5.61□□□□□ -1.51
VPS39-213ENST00000570062 ICOSQ9Y6W8 199 aa5.61□□□□□ -1.51
VPS39-213ENST00000570062 C11orf86A6NJI1 115 aa5.6□□□□□ -1.51
VPS39-213ENST00000570062 F5H768 121 aa5.6□□□□□ -1.51
VPS39-213ENST00000570062 HNRNPA3P51991 378 aaKnown RBP5.6□□□□□ -1.51
VPS39-213ENST00000570062 DEFB121Q5J5C9 76 aa5.6□□□□□ -1.51
VPS39-213ENST00000570062 ZC2HC1BQ5TFG8 222 aa5.6□□□□□ -1.51
VPS39-213ENST00000570062 TM2D3Q9BRN9 247 aa5.6□□□□□ -1.51
VPS39-213ENST00000570062 IGHV3-38A0A0C4DH36 116 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 A0A1B0GUV1 79 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 TINCRA0A1B0GVN0 87 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 hDV102S1A0JD36 115 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 E9PLD3 99 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 H3BRM9 83 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 FGF6P10767 208 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 HERVK_113P63121 156 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 SBSPONQ8IVN8 264 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 C11orf45Q8TAV5 145 aa5.59□□□□□ -1.51
VPS39-213ENST00000570062 TENM1Q9UKZ4 2725 aa5.59□□□□□ -1.52
VPS39-213ENST00000570062 PRKDCP78527 4128 aaKnown RBP5.59□□□□□ -1.52
VPS39-213ENST00000570062 M0R143 59 aa5.58□□□□□ -1.52
VPS39-213ENST00000570062 NHLRC4P0CG21 123 aaPredicted RBP5.58□□□□□ -1.52
VPS39-213ENST00000570062 NTM-AS1Q6ZSK4 140 aa5.58□□□□□ -1.52
VPS39-213ENST00000570062 FAM19A3Q7Z5A8 133 aa5.58□□□□□ -1.52
VPS39-213ENST00000570062 PLEKHB2Q96CS7 222 aa5.58□□□□□ -1.52
VPS39-213ENST00000570062 CHCHD5Q9BSY4 110 aa5.58□□□□□ -1.52
VPS39-213ENST00000570062 GEMIN7Q9H840 131 aaKnown RBP5.58□□□□□ -1.52
VPS39-213ENST00000570062 CDC42SE2Q9NRR3 84 aa5.58□□□□□ -1.52
VPS39-213ENST00000570062 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.57□□□□□ -1.52
VPS39-213ENST00000570062 IGKV2-29A2NJV5 120 aaPredicted RBP5.57□□□□□ -1.52
VPS39-213ENST00000570062 K7EIL1 84 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 DEFB4AO15263 64 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 NMUP48645 174 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 C12orf74Q32Q52 190 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 TMEM170BQ5T4T1 132 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 LELP1Q5T871 98 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 STPG4Q8N801 248 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 C14orf144Q96I85 54 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 HIGD1BQ9P298 99 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 Q9UF83 564 aa5.57□□□□□ -1.52
VPS39-213ENST00000570062 NOTCH3Q9UM47 2321 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 IGLV4-69A0A075B6H9 119 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 TRAV10A0A0B4J240 114 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 TRAV8-6A0A0B4J262 113 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 TMEM262E9PQX1 116 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 UBE2D1P51668 147 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 MAJINQ3KP22 176 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 ANKRD39Q53RE8 183 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 SFTA2Q6UW10 78 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 C15orf53Q8NAA6 179 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 VSIG2Q96IQ7 327 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 CHAC1Q9BUX1 264 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 CELA1Q9UNI1 258 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 BIRC6Q9NR09 4857 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 VWFP04275 2813 aa5.56□□□□□ -1.52
VPS39-213ENST00000570062 LOC100131303A0A0U1RQF7 123 aa5.55□□□□□ -1.52
VPS39-213ENST00000570062 LINC00587B1AMM8 73 aa5.55□□□□□ -1.52
VPS39-213ENST00000570062 LEPROTO15243 131 aa5.55□□□□□ -1.52
VPS39-213ENST00000570062 HTN3P15516 51 aa5.55□□□□□ -1.52
VPS39-213ENST00000570062 GCSHP23434 173 aa5.55□□□□□ -1.52
VPS39-213ENST00000570062 KRTAP10-2P60368 255 aa5.55□□□□□ -1.52
VPS39-213ENST00000570062 TAL2Q16559 108 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms