RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 HCP5Q6MZN7 132 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 C20orf203Q8NBC4 194 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 Q9BRP9 147 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 LINC00574Q9H8X3 128 aa2.9□□□□□ -1.95
VPS39-212ENST00000570023 TNRC6BQ9UPQ9 1833 aaKnown RBP2.9□□□□□ -1.95
VPS39-212ENST00000570023 HEATR1Q9H583 2144 aaKnown RBP2.9□□□□□ -1.95
VPS39-212ENST00000570023 SNRNP200O75643 2136 aaKnown RBP2.89□□□□□ -1.95
VPS39-212ENST00000570023 IGLV3-9A0A075B6K5 115 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 IGLV5-45A0A087WSX0 123 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 IGHV3-43A0A0B4J1X8 118 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 A0A0J9YXV3 536 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 IGKV2-29A2NJV5 120 aaPredicted RBP2.89□□□□□ -1.95
VPS39-212ENST00000570023 A6NED7 52 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 IGHV3-43DP0DP04 118 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 KRTAP10-7P60409 375 aaPredicted RBP2.89□□□□□ -1.95
VPS39-212ENST00000570023 NDPQ00604 133 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 MOBPQ13875 183 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 CASC2Q6XLA1 102 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 ZCCHC13Q8WW36 166 aaKnown RBP2.89□□□□□ -1.95
VPS39-212ENST00000570023 RPL39LQ96EH5 51 aaKnown RBP2.89□□□□□ -1.95
VPS39-212ENST00000570023 DEFB126Q9BYW3 111 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 CELA1Q9UNI1 258 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 C2orf16Q68DN1 1984 aa2.89□□□□□ -1.95
VPS39-212ENST00000570023 IGLV4-3A0A075B6K6 122 aa2.88□□□□□ -1.95
VPS39-212ENST00000570023 IGHV1OR15-1A0A075B7D0 117 aa2.88□□□□□ -1.95
VPS39-212ENST00000570023 IGKV2-40A0A087WW87 121 aaPredicted RBP2.88□□□□□ -1.95
VPS39-212ENST00000570023 TRBV10-1A0A0K0K1A3 114 aa2.88□□□□□ -1.95
VPS39-212ENST00000570023 IGKV2D-40P01614 121 aaPredicted RBP2.88□□□□□ -1.95
VPS39-212ENST00000570023 B3GALT5-AS1P59052 145 aa2.88□□□□□ -1.95
VPS39-212ENST00000570023 RPS21P63220 83 aaKnown RBP2.88□□□□□ -1.95
VPS39-212ENST00000570023 HAMPP81172 84 aa2.88□□□□□ -1.95
VPS39-212ENST00000570023 C9orf129Q5T035 196 aaKnown RBP2.88□□□□□ -1.95
VPS39-212ENST00000570023 Q6ZQT0 140 aa2.88□□□□□ -1.95
VPS39-212ENST00000570023 SPANXA2-OT1Q8N9U9 137 aa2.88□□□□□ -1.95
VPS39-212ENST00000570023 EML6Q6ZMW3 1958 aa2.88□□□□□ -1.95
VPS39-212ENST00000570023 MUC22E2RYF6 1773 aaPredicted RBP2.87□□□□□ -1.95
VPS39-212ENST00000570023 IGHV3-64A0A075B6Q5 118 aa2.87□□□□□ -1.95
VPS39-212ENST00000570023 I3L2K1 104 aa2.87□□□□□ -1.95
VPS39-212ENST00000570023 LECT2O14960 151 aa2.87□□□□□ -1.95
VPS39-212ENST00000570023 IGKV1-17P01599 117 aa2.87□□□□□ -1.95
VPS39-212ENST00000570023 CD52P31358 61 aa2.87□□□□□ -1.95
VPS39-212ENST00000570023 SMIM11BQ8TCY0 68 aa2.87□□□□□ -1.95
VPS39-212ENST00000570023 PRR15LQ9BU68 103 aa2.87□□□□□ -1.95
VPS39-212ENST00000570023 ZNF706Q9Y5V0 76 aaPredicted RBP2.87□□□□□ -1.95
VPS39-212ENST00000570023 IGKV3D-15A0A087WSY6 115 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 LY6G6DO95868 133 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 MGPP08493 103 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 IGHV4-31P0DP07 118 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 LINC00315P59091 139 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 RPL39P62891 51 aaKnown RBP2.86□□□□□ -1.95
VPS39-212ENST00000570023 C17orf58Q2M2W7 97 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 Q8N814 137 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 Q8TAT8 98 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 HIGD2AQ9BW72 106 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 KLK9Q9UKQ9 250 aa2.86□□□□□ -1.95
VPS39-212ENST00000570023 CEP192Q8TEP8 1941 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 LRRK1Q38SD2 2015 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 IGHV3-16A0A0C4DH30 117 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 LRCOL1A6NCL2 159 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 A8MU10 97 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 IGLV2-23P01705 113 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 SPTBP11277 2137 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 LMO4P61968 165 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 MRGPRG-AS1Q2M3A8 158 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 RNF5Q99942 180 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 B9D2Q9BPU9 175 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 RETNLBQ9BQ08 111 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 ZNF702PQ9H963 129 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 XAGE1AQ9HD64 81 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 CACNA1CQ13936 2221 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 POLEQ07864 2286 aa2.85□□□□□ -1.95
VPS39-212ENST00000570023 GOLGA4Q13439 2230 aaKnown RBP2.84□□□□□ -1.95
VPS39-212ENST00000570023 CABIN1Q9Y6J0 2220 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 IGHV3-49A0A0A0MS15 119 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 IGHV3-38A0A0C4DH36 116 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 H3BPC8 53 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 MRPL33O75394 65 aaKnown RBP2.84□□□□□ -1.95
VPS39-212ENST00000570023 IGHV3-48P01763 117 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 LCE1EQ5T753 118 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 ATP1A1-AS1Q5TC04 95 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 C11orf71Q6IPW1 123 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 NTM-AS1Q6ZSK4 140 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 ZNRF1Q8ND25 227 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 LINC00208Q96KT6 92 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 SND1-IT1Q9HBX3 110 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 LINC01558Q9Y6Z2 57 aa2.84□□□□□ -1.95
VPS39-212ENST00000570023 IGHV3-15A0A0B4J1V0 119 aa2.83□□□□□ -1.96
VPS39-212ENST00000570023 IGHV3-73A0A0B4J1V6 119 aa2.83□□□□□ -1.96
VPS39-212ENST00000570023 CNBPP62633 177 aaKnown RBP2.83□□□□□ -1.96
VPS39-212ENST00000570023 DEFB110Q30KQ9 67 aa2.83□□□□□ -1.96
VPS39-212ENST00000570023 PRSS33Q8NF86 280 aa2.83□□□□□ -1.96
VPS39-212ENST00000570023 LINC00467Q9BRT7 94 aa2.83□□□□□ -1.96
VPS39-212ENST00000570023 PLAC8Q9NZF1 115 aa2.83□□□□□ -1.96
VPS39-212ENST00000570023 S4R3C0 116 aa2.83□□□□□ -1.96
VPS39-212ENST00000570023 IGKV2-28A0A075B6P5 120 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 ETDCA0A1B0GVM5 59 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 SRRM5B3KS81 715 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 K7EIM0 57 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 M0QY20 66 aa2.82□□□□□ -1.96
VPS39-212ENST00000570023 IGKV2D-28P01615 120 aa2.82□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms