RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 HRCT1Q6UXD1 115 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 KRTAP1-3Q8IUG1 177 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 ARL17AQ8IVW1 177 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 C4orf3Q8WVX3 66 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 TMEM141Q96I45 108 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 LINC01549A6NIU2 74 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 MEIG1Q5JSS6 88 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 ESM1Q9NQ30 184 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 TRBV6-5A0A0K0K1A5 114 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 LGALS3P17931 250 aaKnown RBP6.39□□□□□ -1.39
LINC00558-201ENST00000569422 C20orf203Q8NBC4 194 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 TIMM17AQ99595 171 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 EDA2RQ9HAV5 297 aa6.39□□□□□ -1.39
LINC00558-201ENST00000569422 H7C2G1 150 aa6.38□□□□□ -1.39
LINC00558-201ENST00000569422 RHODO00212 210 aa6.38□□□□□ -1.39
LINC00558-201ENST00000569422 SERTAD4-AS1Q5TG53 156 aa6.38□□□□□ -1.39
LINC00558-201ENST00000569422 FLNBO75369 2602 aaKnown RBP6.38□□□□□ -1.39
LINC00558-201ENST00000569422 HELZ2Q9BYK8 2649 aaKnown RBP6.38□□□□□ -1.39
LINC00558-201ENST00000569422 VPREB1P12018 145 aa6.38□□□□□ -1.39
LINC00558-201ENST00000569422 CD164Q04900 197 aa6.38□□□□□ -1.39
LINC00558-201ENST00000569422 WFDC2Q14508 124 aa6.38□□□□□ -1.39
LINC00558-201ENST00000569422 WFDC10AQ9H1F0 79 aa6.38□□□□□ -1.39
LINC00558-201ENST00000569422 USP17L23D6RBM5 183 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 J3QQQ9 107 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 M0R2P5 195 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 OR5A1Q8NGJ0 315 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 IGLV4-3A0A075B6K6 122 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 TRGV1A0A0A0MS02 117 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 CCL24O00175 119 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 PAPPA-AS1Q5QFB9 102 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 SH2D6Q7Z4S9 175 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 HECTD1Q9ULT8 2610 aa6.37□□□□□ -1.39
LINC00558-201ENST00000569422 TRAV8-3A0A0A6YYJ7 113 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 TRAV2A0A0B4J234 112 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 ODF3L2Q3SX64 289 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 Q5XG85 94 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 A0A0J9YY99 117 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 INSP01308 110 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 NDUFV3P56181 108 aaKnown RBP6.36□□□□□ -1.39
LINC00558-201ENST00000569422 NPC2P61916 151 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 RHOHQ15669 191 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 RRN3P1Q2M238 152 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 NSUN5P1Q3KNT7 163 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 CFAP126Q5VTH2 177 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 SPANXCQ9NY87 97 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 MT-ATP8P03928 68 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 Q8N2B8 174 aa6.36□□□□□ -1.39
LINC00558-201ENST00000569422 A8MWV9 139 aa6.35□□□□□ -1.39
LINC00558-201ENST00000569422 PSMB2P49721 201 aa6.35□□□□□ -1.39
LINC00558-201ENST00000569422 ETDBQ3ZM63 59 aa6.35□□□□□ -1.39
LINC00558-201ENST00000569422 CD164L2Q6UWJ8 174 aa6.35□□□□□ -1.39
LINC00558-201ENST00000569422 CARD19Q96LW7 228 aa6.35□□□□□ -1.39
LINC00558-201ENST00000569422 ZNF22P17026 224 aaPredicted RBP6.35□□□□□ -1.39
LINC00558-201ENST00000569422 Q6ZUT4 128 aa6.35□□□□□ -1.39
LINC00558-201ENST00000569422 TEX29Q8N6K0 151 aa6.35□□□□□ -1.39
LINC00558-201ENST00000569422 PRSS2P07478 247 aa6.34□□□□□ -1.39
LINC00558-201ENST00000569422 SMR3AQ99954 134 aa6.34□□□□□ -1.39
LINC00558-201ENST00000569422 FN1P02751 2386 aaKnown RBP6.34□□□□□ -1.39
LINC00558-201ENST00000569422 LINC00467Q9BRT7 94 aa6.34□□□□□ -1.39
LINC00558-201ENST00000569422 HIVEP2P31629 2446 aa6.34□□□□□ -1.39
LINC00558-201ENST00000569422 SCGB1C2P0DMR2 95 aa6.34□□□□□ -1.4
LINC00558-201ENST00000569422 PLA2G2AP14555 144 aa6.34□□□□□ -1.4
LINC00558-201ENST00000569422 HILS1P60008 231 aa6.34□□□□□ -1.4
LINC00558-201ENST00000569422 SETXQ7Z333 2677 aaKnown RBP6.34□□□□□ -1.4
LINC00558-201ENST00000569422 TMEM223A0PJW6 202 aa6.33□□□□□ -1.4
LINC00558-201ENST00000569422 GAGE13Q4V321 117 aa6.33□□□□□ -1.4
LINC00558-201ENST00000569422 C11orf72Q8NBR9 251 aa6.33□□□□□ -1.4
LINC00558-201ENST00000569422 Q6ZTI0 123 aa6.33□□□□□ -1.4
LINC00558-201ENST00000569422 C1orf158Q8N1D5 194 aa6.33□□□□□ -1.4
LINC00558-201ENST00000569422 A0A1B0GWB2 263 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 LINC01006Q8NI28 216 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 C11orf45Q8TAV5 145 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 TIMM21Q9BVV7 248 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 NOP10Q9NPE3 64 aaKnown RBP6.32□□□□□ -1.4
LINC00558-201ENST00000569422 IGHV3-30P01768 117 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 IGHV3-30-5P0DP03 117 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 RPL13AP40429 203 aaKnown RBP6.32□□□□□ -1.4
LINC00558-201ENST00000569422 LINC01561Q8N1V8 128 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 C2orf48Q96LS8 159 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 UNC79Q9P2D8 2635 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 CFC1BP0CG36 223 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 CFC1P0CG37 223 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 IGHV3-30-3P0DP02 117 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 NFE4Q86UQ8 179 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 NDUFA11Q86Y39 141 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 MUSTN1Q8IVN3 82 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 SLC25A29Q8N8R3 303 aa6.32□□□□□ -1.4
LINC00558-201ENST00000569422 LEPROTO15243 131 aa6.31□□□□□ -1.4
LINC00558-201ENST00000569422 Q1RN00 199 aa6.31□□□□□ -1.4
LINC00558-201ENST00000569422 C10orf126Q8N4M7 172 aa6.31□□□□□ -1.4
LINC00558-201ENST00000569422 ZNF625Q96I27 306 aaPredicted RBP6.31□□□□□ -1.4
LINC00558-201ENST00000569422 AMELXQ99217 191 aa6.31□□□□□ -1.4
LINC00558-201ENST00000569422 CHCHD7Q9BUK0 85 aa6.31□□□□□ -1.4
LINC00558-201ENST00000569422 INSL3P51460 131 aa6.31□□□□□ -1.4
LINC00558-201ENST00000569422 DAND5Q8N907 189 aa6.31□□□□□ -1.4
LINC00558-201ENST00000569422 FAM104AQ969W3 186 aa6.31□□□□□ -1.4
LINC00558-201ENST00000569422 NBEAL2Q6ZNJ1 2754 aa6.31□□□□□ -1.4
LINC00558-201ENST00000569422 IGKV3OR2-268A0A0C4DH90 116 aa6.3□□□□□ -1.4
LINC00558-201ENST00000569422 UBE2D1P51668 147 aa6.3□□□□□ -1.4
LINC00558-201ENST00000569422 UBE2D4Q9Y2X8 147 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms