RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 CLPSL2Q6UWE3 100 aa14.6□□□□□ -0.07
CLN3-234ENST00000568472 CDC42SE2Q9NRR3 84 aa14.6□□□□□ -0.07
CLN3-234ENST00000568472 UBE2D4Q9Y2X8 147 aa14.6□□□□□ -0.07
CLN3-234ENST00000568472 ZNF664Q8N3J9 261 aa14.59□□□□□ -0.07
CLN3-234ENST00000568472 SPANXA1Q9NS26 97 aa14.59□□□□□ -0.07
CLN3-234ENST00000568472 PGPEP1Q9NXJ5 209 aa14.59□□□□□ -0.07
CLN3-234ENST00000568472 CBLN2Q8IUK8 224 aa14.58□□□□□ -0.08
CLN3-234ENST00000568472 PRSS3P2Q8NHM4 247 aa14.58□□□□□ -0.08
CLN3-234ENST00000568472 EPPK1P58107 5090 aaKnown RBP14.58□□□□□ -0.08
CLN3-234ENST00000568472 IFI27P40305 119 aaPredicted RBP14.57□□□□□ -0.08
CLN3-234ENST00000568472 SPATA12Q7Z6I5 190 aa14.56□□□□□ -0.08
CLN3-234ENST00000568472 MAPKAPK5-AS1Q8N8E1 139 aa14.56□□□□□ -0.08
CLN3-234ENST00000568472 HECTD4Q9Y4D8 3996 aa14.56□□□□□ -0.08
CLN3-234ENST00000568472 CCL25O15444 150 aa14.55□□□□□ -0.08
CLN3-234ENST00000568472 CDPF1Q6NVV7 123 aa14.55□□□□□ -0.08
CLN3-234ENST00000568472 PYGO1Q9Y3Y4 419 aa14.55□□□□□ -0.08
CLN3-234ENST00000568472 RPL39P62891 51 aaKnown RBP14.54□□□□□ -0.08
CLN3-234ENST00000568472 KRTAP26-1Q6PEX3 210 aa14.54□□□□□ -0.08
CLN3-234ENST00000568472 BAALCQ8WXS3 180 aa14.54□□□□□ -0.08
CLN3-234ENST00000568472 CYSLTR1Q9Y271 337 aa14.54□□□□□ -0.08
CLN3-234ENST00000568472 IGLV10-54A0A075B6I4 117 aa14.53□□□□□ -0.08
CLN3-234ENST00000568472 MRPS36P82909 103 aaKnown RBP14.53□□□□□ -0.08
CLN3-234ENST00000568472 C14orf177Q52M58 125 aa14.53□□□□□ -0.08
CLN3-234ENST00000568472 Q8N814 137 aa14.53□□□□□ -0.08
CLN3-234ENST00000568472 NTN5Q8WTR8 489 aaPredicted RBP14.53□□□□□ -0.08
CLN3-234ENST00000568472 PKD1P98161 4303 aa14.53□□□□□ -0.08
CLN3-234ENST00000568472 IGKV3OR2-268A0A0C4DH90 116 aa14.52□□□□□ -0.09
CLN3-234ENST00000568472 LINC01546A6NGU7 62 aa14.52□□□□□ -0.09
CLN3-234ENST00000568472 LINC01549A6NIU2 74 aa14.52□□□□□ -0.09
CLN3-234ENST00000568472 SS18Q15532 418 aa14.52□□□□□ -0.09
CLN3-234ENST00000568472 LINC00959A0A1B0GUT2 108 aa14.51□□□□□ -0.09
CLN3-234ENST00000568472 NPSP0C0P6 89 aa14.51□□□□□ -0.09
CLN3-234ENST00000568472 C2orf66Q6UXQ4 117 aa14.51□□□□□ -0.09
CLN3-234ENST00000568472 C1orf196B1AJZ1 125 aa14.5□□□□□ -0.09
CLN3-234ENST00000568472 KRTAP10-2P60368 255 aa14.5□□□□□ -0.09
CLN3-234ENST00000568472 FA2HQ7L5A8 372 aa14.5□□□□□ -0.09
CLN3-234ENST00000568472 CHCHD10Q8WYQ3 142 aaPredicted RBP14.5□□□□□ -0.09
CLN3-234ENST00000568472 C16orf90A8MZG2 172 aa14.48□□□□□ -0.09
CLN3-234ENST00000568472 LECT2O14960 151 aa14.48□□□□□ -0.09
CLN3-234ENST00000568472 Q6ZUT4 128 aa14.48□□□□□ -0.09
CLN3-234ENST00000568472 GAGE12HA6NDE8 117 aa14.47□□□□□ -0.09
CLN3-234ENST00000568472 RAB5BP61020 215 aa14.47□□□□□ -0.09
CLN3-234ENST00000568472 WFDC2Q14508 124 aa14.47□□□□□ -0.09
CLN3-234ENST00000568472 C18orf32Q8TCD1 76 aa14.47□□□□□ -0.09
CLN3-234ENST00000568472 DNAH11Q96DT5 4516 aa14.46□□□□□ -0.09
CLN3-234ENST00000568472 USP17L23D6RBM5 183 aa14.46□□□□□ -0.09
CLN3-234ENST00000568472 PAPPA-AS1Q5QFB9 102 aa14.46□□□□□ -0.09
CLN3-234ENST00000568472 CFAP161Q6P656 301 aa14.46□□□□□ -0.09
CLN3-234ENST00000568472 TOMM6Q96B49 74 aa14.46□□□□□ -0.09
CLN3-234ENST00000568472 AP5S1Q9NUS5 200 aa14.46□□□□□ -0.09
CLN3-234ENST00000568472 COLCA2A8K830 154 aa14.45□□□□□ -0.1
CLN3-234ENST00000568472 LINC00614P0C842 121 aa14.45□□□□□ -0.1
CLN3-234ENST00000568472 CD164L2Q6UWJ8 174 aa14.45□□□□□ -0.1
CLN3-234ENST00000568472 Q6ZN92 141 aa14.45□□□□□ -0.1
CLN3-234ENST00000568472 TMEM141Q96I45 108 aa14.45□□□□□ -0.1
CLN3-234ENST00000568472 IGLV4-3A0A075B6K6 122 aa14.44□□□□□ -0.1
CLN3-234ENST00000568472 IGLV5-52A0A0A0MRZ9 124 aa14.44□□□□□ -0.1
CLN3-234ENST00000568472 XCL1P47992 114 aa14.44□□□□□ -0.1
CLN3-234ENST00000568472 RNASE13Q5GAN3 156 aaKnown RBP14.44□□□□□ -0.1
CLN3-234ENST00000568472 FAM104AQ969W3 186 aa14.44□□□□□ -0.1
CLN3-234ENST00000568472 TRAV13-1A0A0B4J241 112 aa14.43□□□□□ -0.1
CLN3-234ENST00000568472 IGIPA6NJ69 53 aa14.43□□□□□ -0.1
CLN3-234ENST00000568472 FOXI1Q12951 378 aa14.43□□□□□ -0.1
CLN3-234ENST00000568472 TIMM17AQ99595 171 aa14.43□□□□□ -0.1
CLN3-234ENST00000568472 OPRPNQ99935 248 aaPredicted RBP14.43□□□□□ -0.1
CLN3-234ENST00000568472 TEX43Q6ZNM6 134 aa14.42□□□□□ -0.1
CLN3-234ENST00000568472 ERASQ7Z444 233 aa14.42□□□□□ -0.1
CLN3-234ENST00000568472 VCX2Q9H322 139 aa14.42□□□□□ -0.1
CLN3-234ENST00000568472 BIRC6Q9NR09 4857 aa14.41□□□□□ -0.1
CLN3-234ENST00000568472 IFITM10A6NMD0 228 aa14.41□□□□□ -0.1
CLN3-234ENST00000568472 TRGC2P03986 189 aa14.41□□□□□ -0.1
CLN3-234ENST00000568472 S100A1P23297 94 aa14.41□□□□□ -0.1
CLN3-234ENST00000568472 C2orf88Q9BSF0 95 aa14.41□□□□□ -0.1
CLN3-234ENST00000568472 SCGB3A1Q96QR1 104 aa14.4□□□□□ -0.1
CLN3-234ENST00000568472 GCSHP23434 173 aa14.39□□□□□ -0.11
CLN3-234ENST00000568472 AMELXQ99217 191 aa14.39□□□□□ -0.11
CLN3-234ENST00000568472 PKHD1P08F94 4074 aa14.39□□□□□ -0.11
CLN3-234ENST00000568472 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.38□□□□□ -0.11
CLN3-234ENST00000568472 COX7A2LO14548 114 aa14.37□□□□□ -0.11
CLN3-234ENST00000568472 SCO1O75880 301 aa14.37□□□□□ -0.11
CLN3-234ENST00000568472 PRSS1P07477 247 aa14.37□□□□□ -0.11
CLN3-234ENST00000568472 CHCHD1Q96BP2 118 aaKnown RBP14.37□□□□□ -0.11
CLN3-234ENST00000568472 URB1-AS1Q96HZ7 61 aa14.37□□□□□ -0.11
CLN3-234ENST00000568472 IGHV1-58A0A0C4DH39 117 aa14.36□□□□□ -0.11
CLN3-234ENST00000568472 hDV102S1A0JD36 115 aa14.36□□□□□ -0.11
CLN3-234ENST00000568472 HBDP02042 147 aa14.35□□□□□ -0.11
CLN3-234ENST00000568472 MALP21145 153 aa14.35□□□□□ -0.11
CLN3-234ENST00000568472 FUSP35637 526 aaKnown RBP eCLIP14.35□□□□□ -0.11
CLN3-234ENST00000568472 BAGE3Q86Y29 109 aa14.34□□□□□ -0.11
CLN3-234ENST00000568472 C15orf56Q8N910 161 aa14.34□□□□□ -0.11
CLN3-234ENST00000568472 DYNC1H1Q14204 4646 aaKnown RBP14.33□□□□□ -0.12
CLN3-234ENST00000568472 GVQW2A0A096LPI5 108 aaPredicted RBP14.33□□□□□ -0.12
CLN3-234ENST00000568472 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.33□□□□□ -0.12
CLN3-234ENST00000568472 UBE2D1P51668 147 aa14.33□□□□□ -0.12
CLN3-234ENST00000568472 CNBPP62633 177 aaKnown RBP14.33□□□□□ -0.12
CLN3-234ENST00000568472 SEC11AP67812 179 aa14.33□□□□□ -0.12
CLN3-234ENST00000568472 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.32□□□□□ -0.12
CLN3-234ENST00000568472 IGHV3OR16-9A0A0B4J2B5 98 aa14.32□□□□□ -0.12
CLN3-234ENST00000568472 APOMO95445 188 aa14.32□□□□□ -0.12
CLN3-234ENST00000568472 LINC00173Q6ZV60 143 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms