RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 COX19Q49B96 90 aa12.91□□□□□ -0.34
CLN3-225ENST00000566824 Q8N8P6 123 aa12.91□□□□□ -0.34
CLN3-225ENST00000566824 UBE2D4Q9Y2X8 147 aa12.91□□□□□ -0.34
CLN3-225ENST00000566824 MT-ND6P03923 174 aa12.9□□□□□ -0.34
CLN3-225ENST00000566824 ZNF25P17030 456 aaPredicted RBP12.9□□□□□ -0.34
CLN3-225ENST00000566824 IFI27P40305 119 aaPredicted RBP12.9□□□□□ -0.34
CLN3-225ENST00000566824 OR5A1Q8NGJ0 315 aa12.9□□□□□ -0.34
CLN3-225ENST00000566824 FAM104AQ969W3 186 aa12.9□□□□□ -0.34
CLN3-225ENST00000566824 CDC42SE2Q9NRR3 84 aa12.9□□□□□ -0.34
CLN3-225ENST00000566824 RNASE13Q5GAN3 156 aaKnown RBP12.89□□□□□ -0.35
CLN3-225ENST00000566824 TMEM101Q96IK0 257 aa12.88□□□□□ -0.35
CLN3-225ENST00000566824 OPRPNQ99935 248 aaPredicted RBP12.88□□□□□ -0.35
CLN3-225ENST00000566824 SMCO4Q9NRQ5 59 aa12.88□□□□□ -0.35
CLN3-225ENST00000566824 TRAPPC1Q9Y5R8 145 aa12.88□□□□□ -0.35
CLN3-225ENST00000566824 COX11Q9Y6N1 276 aa12.88□□□□□ -0.35
CLN3-225ENST00000566824 LRP1BQ9NZR2 4599 aa12.88□□□□□ -0.35
CLN3-225ENST00000566824 RAB5AP20339 215 aa12.88□□□□□ -0.35
CLN3-225ENST00000566824 Q6ZUT4 128 aa12.88□□□□□ -0.35
CLN3-225ENST00000566824 ZNF664Q8N3J9 261 aa12.88□□□□□ -0.35
CLN3-225ENST00000566824 Q8N814 137 aa12.88□□□□□ -0.35
CLN3-225ENST00000566824 EREGO14944 169 aa12.87□□□□□ -0.35
CLN3-225ENST00000566824 TIMM21Q9BVV7 248 aa12.87□□□□□ -0.35
CLN3-225ENST00000566824 KIAA1109Q2LD37 5005 aa12.86□□□□□ -0.35
CLN3-225ENST00000566824 CSDC2Q9Y534 153 aaKnown RBP12.86□□□□□ -0.35
CLN3-225ENST00000566824 TRAV8-4A0A0B4J246 113 aa12.85□□□□□ -0.35
CLN3-225ENST00000566824 C16orf90A8MZG2 172 aa12.85□□□□□ -0.35
CLN3-225ENST00000566824 DGAT2L7PQ6IED9 249 aa12.85□□□□□ -0.35
CLN3-225ENST00000566824 NXT2Q9NPJ8 142 aaKnown RBP12.85□□□□□ -0.35
CLN3-225ENST00000566824 LINC00959A0A1B0GUT2 108 aa12.84□□□□□ -0.35
CLN3-225ENST00000566824 GAGE12HA6NDE8 117 aa12.84□□□□□ -0.35
CLN3-225ENST00000566824 SCO1O75880 301 aa12.84□□□□□ -0.35
CLN3-225ENST00000566824 CHCHD10Q8WYQ3 142 aaPredicted RBP12.84□□□□□ -0.35
CLN3-225ENST00000566824 TMEM18Q96B42 140 aa12.84□□□□□ -0.35
CLN3-225ENST00000566824 USP17L23D6RBM5 183 aa12.83□□□□□ -0.36
CLN3-225ENST00000566824 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.82□□□□□ -0.36
CLN3-225ENST00000566824 PRSS3P2Q8NHM4 247 aa12.82□□□□□ -0.36
CLN3-225ENST00000566824 URB1-AS1Q96HZ7 61 aa12.82□□□□□ -0.36
CLN3-225ENST00000566824 SPANXA1Q9NS26 97 aa12.82□□□□□ -0.36
CLN3-225ENST00000566824 PGPEP1Q9NXJ5 209 aa12.82□□□□□ -0.36
CLN3-225ENST00000566824 ORMDL2Q53FV1 153 aa12.81□□□□□ -0.36
CLN3-225ENST00000566824 C2orf66Q6UXQ4 117 aa12.81□□□□□ -0.36
CLN3-225ENST00000566824 C18orf32Q8TCD1 76 aa12.81□□□□□ -0.36
CLN3-225ENST00000566824 LINC01546A6NGU7 62 aa12.8□□□□□ -0.36
CLN3-225ENST00000566824 CCL25O15444 150 aa12.8□□□□□ -0.36
CLN3-225ENST00000566824 XCL1P47992 114 aa12.8□□□□□ -0.36
CLN3-225ENST00000566824 FOXI1Q12951 378 aa12.8□□□□□ -0.36
CLN3-225ENST00000566824 NTN5Q8WTR8 489 aaPredicted RBP12.8□□□□□ -0.36
CLN3-225ENST00000566824 IGLV4-3A0A075B6K6 122 aa12.79□□□□□ -0.36
CLN3-225ENST00000566824 COLCA2A8K830 154 aa12.79□□□□□ -0.36
CLN3-225ENST00000566824 SMAGPQ0VAQ4 97 aa12.79□□□□□ -0.36
CLN3-225ENST00000566824 ZC2HC1BQ5TFG8 222 aa12.79□□□□□ -0.36
CLN3-225ENST00000566824 CYSLTR1Q9Y271 337 aa12.79□□□□□ -0.36
CLN3-225ENST00000566824 IGLV5-52A0A0A0MRZ9 124 aa12.78□□□□□ -0.36
CLN3-225ENST00000566824 TRAV13-1A0A0B4J241 112 aa12.78□□□□□ -0.36
CLN3-225ENST00000566824 K7EMI3 77 aa12.78□□□□□ -0.36
CLN3-225ENST00000566824 PRSS1P07477 247 aa12.78□□□□□ -0.36
CLN3-225ENST00000566824 KRTAP10-1P60331 282 aa12.78□□□□□ -0.36
CLN3-225ENST00000566824 MRPS36P82909 103 aaKnown RBP12.78□□□□□ -0.36
CLN3-225ENST00000566824 PYGO1Q9Y3Y4 419 aa12.78□□□□□ -0.36
CLN3-225ENST00000566824 APOBP04114 4563 aaKnown RBP12.78□□□□□ -0.36
CLN3-225ENST00000566824 RYR1P21817 5038 aa12.76□□□□□ -0.37
CLN3-225ENST00000566824 IGIPA6NJ69 53 aa12.76□□□□□ -0.37
CLN3-225ENST00000566824 SS18Q15532 418 aa12.76□□□□□ -0.37
CLN3-225ENST00000566824 LINC01620Q4KN68 170 aa12.76□□□□□ -0.37
CLN3-225ENST00000566824 CDPF1Q6NVV7 123 aa12.76□□□□□ -0.37
CLN3-225ENST00000566824 C15orf56Q8N910 161 aa12.76□□□□□ -0.37
CLN3-225ENST00000566824 TRGC2P03986 189 aa12.75□□□□□ -0.37
CLN3-225ENST00000566824 FA2HQ7L5A8 372 aa12.75□□□□□ -0.37
CLN3-225ENST00000566824 TOMM6Q96B49 74 aa12.75□□□□□ -0.37
CLN3-225ENST00000566824 DNAH8Q96JB1 4490 aa12.75□□□□□ -0.37
CLN3-225ENST00000566824 LINC00173Q6ZV60 143 aa12.74□□□□□ -0.37
CLN3-225ENST00000566824 A0A096LNJ9 63 aa12.73□□□□□ -0.37
CLN3-225ENST00000566824 IFITM10A6NMD0 228 aa12.73□□□□□ -0.37
CLN3-225ENST00000566824 GCSHP23434 173 aa12.73□□□□□ -0.37
CLN3-225ENST00000566824 TMEM141Q96I45 108 aa12.73□□□□□ -0.37
CLN3-225ENST00000566824 HERC2O95714 4834 aa12.72□□□□□ -0.37
CLN3-225ENST00000566824 C1orf196B1AJZ1 125 aa12.72□□□□□ -0.37
CLN3-225ENST00000566824 CD164L2Q6UWJ8 174 aa12.72□□□□□ -0.37
CLN3-225ENST00000566824 SLPIP03973 132 aa12.71□□□□□ -0.37
CLN3-225ENST00000566824 PMCHL1Q16048 86 aa12.71□□□□□ -0.37
CLN3-225ENST00000566824 HIGD2BQ4VC39 106 aa12.71□□□□□ -0.37
CLN3-225ENST00000566824 C14orf177Q52M58 125 aa12.71□□□□□ -0.37
CLN3-225ENST00000566824 hDV102S1A0JD36 115 aa12.7□□□□□ -0.38
CLN3-225ENST00000566824 LINC00614P0C842 121 aa12.7□□□□□ -0.38
CLN3-225ENST00000566824 AMELXQ99217 191 aa12.7□□□□□ -0.38
CLN3-225ENST00000566824 C5orf38Q86SI9 138 aa12.69□□□□□ -0.38
CLN3-225ENST00000566824 SCGB3A1Q96QR1 104 aa12.69□□□□□ -0.38
CLN3-225ENST00000566824 AP5S1Q9NUS5 200 aa12.69□□□□□ -0.38
CLN3-225ENST00000566824 COX6A2Q02221 97 aa12.68□□□□□ -0.38
CLN3-225ENST00000566824 TEX43Q6ZNM6 134 aa12.68□□□□□ -0.38
CLN3-225ENST00000566824 ERASQ7Z444 233 aa12.68□□□□□ -0.38
CLN3-225ENST00000566824 LINC00526Q96FQ7 95 aa12.68□□□□□ -0.38
CLN3-225ENST00000566824 TIMM17AQ99595 171 aa12.68□□□□□ -0.38
CLN3-225ENST00000566824 KRTAP17-1Q9BYP8 105 aa12.68□□□□□ -0.38
CLN3-225ENST00000566824 HSPG2P98160 4391 aa12.68□□□□□ -0.38
CLN3-225ENST00000566824 UBE2D1P51668 147 aa12.67□□□□□ -0.38
CLN3-225ENST00000566824 LINC00242Q5T6M2 205 aa12.67□□□□□ -0.38
CLN3-225ENST00000566824 VCX2Q9H322 139 aa12.67□□□□□ -0.38
CLN3-225ENST00000566824 FAM30AQ9NZY2 134 aa12.67□□□□□ -0.38
CLN3-225ENST00000566824 IGHV3OR16-9A0A0B4J2B5 98 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms