RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 LYZL1Q6UWQ5 148 aa9.91□□□□□ -0.82
CDH3-205ENST00000566808 FAM19A5Q7Z5A7 132 aaPredicted RBP9.91□□□□□ -0.82
CDH3-205ENST00000566808 MRAP2Q96G30 205 aa9.91□□□□□ -0.82
CDH3-205ENST00000566808 CDC42SE2Q9NRR3 84 aa9.91□□□□□ -0.82
CDH3-205ENST00000566808 CTRLP40313 264 aa9.9□□□□□ -0.82
CDH3-205ENST00000566808 TMUB2Q71RG4 321 aa9.9□□□□□ -0.82
CDH3-205ENST00000566808 MRPL52Q86TS9 123 aaKnown RBP9.9□□□□□ -0.82
CDH3-205ENST00000566808 C1orf196B1AJZ1 125 aa9.89□□□□□ -0.83
CDH3-205ENST00000566808 UBE2BP63146 152 aa9.89□□□□□ -0.83
CDH3-205ENST00000566808 SPAG11BQ08648 103 aa9.89□□□□□ -0.83
CDH3-205ENST00000566808 G3V3Q6 166 aa9.88□□□□□ -0.83
CDH3-205ENST00000566808 I3L3M4 83 aa9.88□□□□□ -0.83
CDH3-205ENST00000566808 M0QXV9 152 aa9.88□□□□□ -0.83
CDH3-205ENST00000566808 IFNA1P01562 189 aa9.88□□□□□ -0.83
CDH3-205ENST00000566808 IFITM3Q01628 133 aa9.88□□□□□ -0.83
CDH3-205ENST00000566808 IMMP2LQ96T52 175 aa9.88□□□□□ -0.83
CDH3-205ENST00000566808 CNFNQ9BYD5 112 aa9.88□□□□□ -0.83
CDH3-205ENST00000566808 MRPL35Q9NZE8 188 aaKnown RBP9.88□□□□□ -0.83
CDH3-205ENST00000566808 PMCHP20382 165 aa9.87□□□□□ -0.83
CDH3-205ENST00000566808 DEFA1P59665 94 aa9.87□□□□□ -0.83
CDH3-205ENST00000566808 TWIST1Q15672 202 aa9.87□□□□□ -0.83
CDH3-205ENST00000566808 CENPWQ5EE01 88 aa9.87□□□□□ -0.83
CDH3-205ENST00000566808 TEX261Q6UWH6 196 aa9.87□□□□□ -0.83
CDH3-205ENST00000566808 C9orf62Q8N4C0 152 aa9.87□□□□□ -0.83
CDH3-205ENST00000566808 FAM210AQ96ND0 272 aa9.87□□□□□ -0.83
CDH3-205ENST00000566808 LINC01547P58512 204 aaPredicted RBP9.86□□□□□ -0.83
CDH3-205ENST00000566808 TSHBP01222 138 aa9.85□□□□□ -0.83
CDH3-205ENST00000566808 TLX1NBP0CAT3 122 aa9.85□□□□□ -0.83
CDH3-205ENST00000566808 OR10D4PQ8NGN7 298 aa9.85□□□□□ -0.83
CDH3-205ENST00000566808 A0A087X002 238 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 A0A1B0GV50 99 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 F8WDY8 70 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 ZNF861PO60384 105 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 Q5BKY6 102 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 TYMSOSQ8TAI1 123 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 SFT2D1Q8WV19 159 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 C11orf52Q96A22 123 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 SMIM12Q96EX1 92 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 RETNLBQ9BQ08 111 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 TMEM242Q9NWH2 141 aa9.84□□□□□ -0.83
CDH3-205ENST00000566808 FXYD6-FXYD2A0A087WZ82 144 aa9.83□□□□□ -0.84
CDH3-205ENST00000566808 TRBV6-5A0A0K0K1A5 114 aa9.83□□□□□ -0.84
CDH3-205ENST00000566808 C5orf38Q86SI9 138 aa9.83□□□□□ -0.84
CDH3-205ENST00000566808 KRTAP7-1Q8IUC3 87 aa9.83□□□□□ -0.84
CDH3-205ENST00000566808 KCNRGQ8N5I3 272 aa9.83□□□□□ -0.84
CDH3-205ENST00000566808 ALG5Q9Y673 324 aa9.83□□□□□ -0.84
CDH3-205ENST00000566808 C7orf77A4D0Y5 90 aa9.82□□□□□ -0.84
CDH3-205ENST00000566808 NDUFA1O15239 70 aa9.82□□□□□ -0.84
CDH3-205ENST00000566808 SMIM15Q7Z3B0 74 aa9.82□□□□□ -0.84
CDH3-205ENST00000566808 MBD3L1Q8WWY6 194 aa9.82□□□□□ -0.84
CDH3-205ENST00000566808 SMDT1Q9H4I9 107 aa9.82□□□□□ -0.84
CDH3-205ENST00000566808 CRYGAP11844 174 aa9.81□□□□□ -0.84
CDH3-205ENST00000566808 FAM213BQ8TBF2 198 aa9.81□□□□□ -0.84
CDH3-205ENST00000566808 NDUFA13Q9P0J0 144 aa9.81□□□□□ -0.84
CDH3-205ENST00000566808 TRAV13-1A0A0B4J241 112 aa9.8□□□□□ -0.84
CDH3-205ENST00000566808 GNG4P50150 75 aa9.8□□□□□ -0.84
CDH3-205ENST00000566808 GAGE2EQ4V326 116 aa9.8□□□□□ -0.84
CDH3-205ENST00000566808 ORAOV1Q8WV07 137 aa9.8□□□□□ -0.84
CDH3-205ENST00000566808 GAGE2DQ9UEU5 116 aa9.8□□□□□ -0.84
CDH3-205ENST00000566808 GIPP09681 153 aaPredicted RBP9.79□□□□□ -0.84
CDH3-205ENST00000566808 BIN3Q9NQY0 253 aa9.79□□□□□ -0.84
CDH3-205ENST00000566808 CSDC2Q9Y534 153 aaKnown RBP9.79□□□□□ -0.84
CDH3-205ENST00000566808 IGLV7-46A0A075B6I9 117 aa9.78□□□□□ -0.84
CDH3-205ENST00000566808 SRSF3P84103 164 aaKnown RBP9.78□□□□□ -0.84
CDH3-205ENST00000566808 SMAGPQ0VAQ4 97 aa9.78□□□□□ -0.84
CDH3-205ENST00000566808 TMEM241Q24JQ0 296 aa9.78□□□□□ -0.84
CDH3-205ENST00000566808 C10orf25Q5T742 122 aa9.78□□□□□ -0.84
CDH3-205ENST00000566808 RNASE7Q9H1E1 156 aaKnown RBP9.78□□□□□ -0.84
CDH3-205ENST00000566808 ST20Q9HBF5 79 aa9.78□□□□□ -0.84
CDH3-205ENST00000566808 CYTL1Q9NRR1 136 aa9.78□□□□□ -0.84
CDH3-205ENST00000566808 C6orf48Q9UBA6 75 aa9.78□□□□□ -0.84
CDH3-205ENST00000566808 UMAD1C9J7I0 102 aa9.77□□□□□ -0.85
CDH3-205ENST00000566808 NUPR1O60356 82 aa9.77□□□□□ -0.85
CDH3-205ENST00000566808 FOXA3P55318 350 aaPredicted RBP9.77□□□□□ -0.85
CDH3-205ENST00000566808 CCL20P78556 96 aa9.77□□□□□ -0.85
CDH3-205ENST00000566808 RNASE13Q5GAN3 156 aaKnown RBP9.77□□□□□ -0.85
CDH3-205ENST00000566808 MANBALQ9NQG1 85 aa9.77□□□□□ -0.85
CDH3-205ENST00000566808 TRBV27A0A0K0K1C4 114 aa9.76□□□□□ -0.85
CDH3-205ENST00000566808 LINC00173Q6ZV60 143 aa9.76□□□□□ -0.85
CDH3-205ENST00000566808 UNQ6190/PRO20217Q6UXQ8 127 aa9.75□□□□□ -0.85
CDH3-205ENST00000566808 UBE2D4Q9Y2X8 147 aa9.75□□□□□ -0.85
CDH3-205ENST00000566808 TRBV20OR9-2A0A075B6H5 130 aa9.74□□□□□ -0.85
CDH3-205ENST00000566808 RAB19A4D1S5 217 aa9.74□□□□□ -0.85
CDH3-205ENST00000566808 POLR2KP53803 58 aaKnown RBP9.74□□□□□ -0.85
CDH3-205ENST00000566808 Q6ZUT4 128 aa9.74□□□□□ -0.85
CDH3-205ENST00000566808 LINC00304Q8N9R0 145 aa9.74□□□□□ -0.85
CDH3-205ENST00000566808 NUDT10Q8NFP7 164 aa9.74□□□□□ -0.85
CDH3-205ENST00000566808 NUDT11Q96G61 164 aa9.74□□□□□ -0.85
CDH3-205ENST00000566808 H2AFB1P0C5Y9 115 aa9.73□□□□□ -0.85
CDH3-205ENST00000566808 RPL28P46779 137 aaKnown RBP9.73□□□□□ -0.85
CDH3-205ENST00000566808 GNG13Q9P2W3 67 aa9.73□□□□□ -0.85
CDH3-205ENST00000566808 FCER1GP30273 86 aa9.72□□□□□ -0.85
CDH3-205ENST00000566808 IGHV3OR16-9A0A0B4J2B5 98 aa9.71□□□□□ -0.86
CDH3-205ENST00000566808 NDUFC2-KCTD14E9PQ53 114 aa9.71□□□□□ -0.86
CDH3-205ENST00000566808 ARPC5O15511 151 aa9.71□□□□□ -0.86
CDH3-205ENST00000566808 C9orf129Q5T035 196 aaKnown RBP9.71□□□□□ -0.86
CDH3-205ENST00000566808 CTDSP1Q9GZU7 261 aa9.71□□□□□ -0.86
CDH3-205ENST00000566808 TRBV30A0A0K0K1B3 111 aa9.7□□□□□ -0.86
CDH3-205ENST00000566808 CTAG1AP78358 180 aa9.7□□□□□ -0.86
CDH3-205ENST00000566808 KRTAP13-2Q52LG2 175 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms