RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PMVKQ15126 192 aa21.02■□□□□ 0.96
CTCF-203ENST00000566078 ESRGQ1W209 222 aa21.02■□□□□ 0.96
CTCF-203ENST00000566078 PAPPA-AS1Q5QFB9 102 aa21.02■□□□□ 0.96
CTCF-203ENST00000566078 TMEM262E9PQX1 116 aa21.01■□□□□ 0.95
CTCF-203ENST00000566078 ZNF25P17030 456 aaPredicted RBP21.01■□□□□ 0.95
CTCF-203ENST00000566078 MRPS36P82909 103 aaKnown RBP21.01■□□□□ 0.95
CTCF-203ENST00000566078 ODF1Q14990 250 aa21.01■□□□□ 0.95
CTCF-203ENST00000566078 CSMD3Q7Z407 3707 aa21.01■□□□□ 0.95
CTCF-203ENST00000566078 A0A087WX48 190 aa21■□□□□ 0.95
CTCF-203ENST00000566078 VCX2Q9H322 139 aa21■□□□□ 0.95
CTCF-203ENST00000566078 PRSS29PA6NIE9 313 aa21■□□□□ 0.95
CTCF-203ENST00000566078 CDPF1Q6NVV7 123 aa21■□□□□ 0.95
CTCF-203ENST00000566078 TEX43Q6ZNM6 134 aa20.99■□□□□ 0.95
CTCF-203ENST00000566078 CST9LQ9H4G1 147 aa20.99■□□□□ 0.95
CTCF-203ENST00000566078 TRAV8-6A0A0B4J262 113 aa20.98■□□□□ 0.95
CTCF-203ENST00000566078 NUPR2A6NF83 97 aa20.98■□□□□ 0.95
CTCF-203ENST00000566078 MPV17L2Q567V2 206 aa20.98■□□□□ 0.95
CTCF-203ENST00000566078 AMELXQ99217 191 aa20.98■□□□□ 0.95
CTCF-203ENST00000566078 CHTOPQ9Y3Y2 248 aaKnown RBP20.97■□□□□ 0.95
CTCF-203ENST00000566078 IGLV4-60A0A075B6I1 120 aa20.96■□□□□ 0.95
CTCF-203ENST00000566078 ATOH7Q8N100 152 aa20.96■□□□□ 0.95
CTCF-203ENST00000566078 CDC42SE2Q9NRR3 84 aa20.96■□□□□ 0.95
CTCF-203ENST00000566078 MRPL35Q9NZE8 188 aaKnown RBP20.96■□□□□ 0.95
CTCF-203ENST00000566078 RBX1P62877 108 aa20.96■□□□□ 0.95
CTCF-203ENST00000566078 ZNF664Q8N3J9 261 aa20.96■□□□□ 0.95
CTCF-203ENST00000566078 TGP01266 2768 aa20.95■□□□□ 0.94
CTCF-203ENST00000566078 F8VRH5 84 aa20.94■□□□□ 0.94
CTCF-203ENST00000566078 PKIAP61925 76 aa20.94■□□□□ 0.94
CTCF-203ENST00000566078 A0A1B0GUV1 79 aa20.93■□□□□ 0.94
CTCF-203ENST00000566078 C2orf88Q9BSF0 95 aa20.93■□□□□ 0.94
CTCF-203ENST00000566078 WFDC10BQ8IUB3 73 aa20.93■□□□□ 0.94
CTCF-203ENST00000566078 Q8N3U1 123 aa20.93■□□□□ 0.94
CTCF-203ENST00000566078 C12orf57Q99622 126 aa20.93■□□□□ 0.94
CTCF-203ENST00000566078 KLK5Q9Y337 293 aaPredicted RBP20.93■□□□□ 0.94
CTCF-203ENST00000566078 LINC00518Q8N0U6 118 aa20.92■□□□□ 0.94
CTCF-203ENST00000566078 APLNQ9ULZ1 77 aa20.91■□□□□ 0.94
CTCF-203ENST00000566078 DPM2O94777 84 aa20.9■□□□□ 0.94
CTCF-203ENST00000566078 STARD9Q9P2P6 4700 aa20.89■□□□□ 0.93
CTCF-203ENST00000566078 IGLV4-69A0A075B6H9 119 aa20.89■□□□□ 0.93
CTCF-203ENST00000566078 IGKCP01834 107 aa20.89■□□□□ 0.93
CTCF-203ENST00000566078 CCL18P55774 89 aa20.89■□□□□ 0.93
CTCF-203ENST00000566078 LINC00588Q9Y4M8 146 aa20.89■□□□□ 0.93
CTCF-203ENST00000566078 PLNP26678 52 aa20.88■□□□□ 0.93
CTCF-203ENST00000566078 MRPS16Q9Y3D3 137 aaKnown RBP20.86■□□□□ 0.93
CTCF-203ENST00000566078 A0A0J9YXV3 536 aa20.85■□□□□ 0.93
CTCF-203ENST00000566078 UBE2D1P51668 147 aa20.85■□□□□ 0.93
CTCF-203ENST00000566078 ZFAND6Q6FIF0 208 aa20.85■□□□□ 0.93
CTCF-203ENST00000566078 IGKV3OR2-268A0A0C4DH90 116 aa20.84■□□□□ 0.93
CTCF-203ENST00000566078 IGHV3-30P01768 117 aa20.84■□□□□ 0.93
CTCF-203ENST00000566078 IGHV3-33P01772 117 aa20.84■□□□□ 0.93
CTCF-203ENST00000566078 ANGP03950 147 aaKnown RBP20.84■□□□□ 0.93
CTCF-203ENST00000566078 IGHV3-30-3P0DP02 117 aa20.84■□□□□ 0.93
CTCF-203ENST00000566078 IGHV3-30-5P0DP03 117 aa20.84■□□□□ 0.93
CTCF-203ENST00000566078 PLECQ15149 4684 aaKnown RBP20.84■□□□□ 0.93
CTCF-203ENST00000566078 TRAV13-1A0A0B4J241 112 aa20.83■□□□□ 0.93
CTCF-203ENST00000566078 C11orf86A6NJI1 115 aa20.83■□□□□ 0.93
CTCF-203ENST00000566078 IGLC3P0DOY3 106 aa20.83■□□□□ 0.93
CTCF-203ENST00000566078 MAJINQ3KP22 176 aa20.83■□□□□ 0.93
CTCF-203ENST00000566078 CHAC1Q9BUX1 264 aa20.83■□□□□ 0.93
CTCF-203ENST00000566078 VAMP8Q9BV40 100 aa20.83■□□□□ 0.93
CTCF-203ENST00000566078 S100A12P80511 92 aa20.82■□□□□ 0.92
CTCF-203ENST00000566078 hDV102S1A0JD36 115 aa20.82■□□□□ 0.92
CTCF-203ENST00000566078 CLPSL2Q6UWE3 100 aa20.82■□□□□ 0.92
CTCF-203ENST00000566078 TCTAP57738 103 aa20.81■□□□□ 0.92
CTCF-203ENST00000566078 NFE4Q86UQ8 179 aa20.81■□□□□ 0.92
CTCF-203ENST00000566078 LINC00269Q8N2A0 174 aa20.81■□□□□ 0.92
CTCF-203ENST00000566078 TRAV9-2A0A087WT02 112 aa20.8■□□□□ 0.92
CTCF-203ENST00000566078 MUC7Q8TAX7 377 aa20.8■□□□□ 0.92
CTCF-203ENST00000566078 PAM16Q9Y3D7 125 aa20.79■□□□□ 0.92
CTCF-203ENST00000566078 LYSTQ99698 3801 aa20.79■□□□□ 0.92
CTCF-203ENST00000566078 WWC2-AS2Q96NR7 200 aa20.78■□□□□ 0.92
CTCF-203ENST00000566078 TINCRA0A1B0GVN0 87 aa20.78■□□□□ 0.92
CTCF-203ENST00000566078 LINC01556Q5JQF7 62 aa20.78■□□□□ 0.92
CTCF-203ENST00000566078 KLK12Q9UKR0 248 aa20.78■□□□□ 0.92
CTCF-203ENST00000566078 HSBP1L1C9JCN9 74 aa20.77■□□□□ 0.92
CTCF-203ENST00000566078 UPK3BQ9BT76 320 aa20.77■□□□□ 0.92
CTCF-203ENST00000566078 TENM2Q9NT68 2774 aa20.76■□□□□ 0.91
CTCF-203ENST00000566078 REG3AQ06141 175 aa20.76■□□□□ 0.91
CTCF-203ENST00000566078 LINC00242Q5T6M2 205 aa20.76■□□□□ 0.91
CTCF-203ENST00000566078 FAM19A3Q7Z5A8 133 aa20.76■□□□□ 0.91
CTCF-203ENST00000566078 STPG4Q8N801 248 aa20.76■□□□□ 0.91
CTCF-203ENST00000566078 UBE2DNLQ8IWF7 75 aa20.75■□□□□ 0.91
CTCF-203ENST00000566078 GEMIN7Q9H840 131 aaKnown RBP20.75■□□□□ 0.91
CTCF-203ENST00000566078 LINC00959A0A1B0GUT2 108 aa20.75■□□□□ 0.91
CTCF-203ENST00000566078 SIVA1O15304 175 aa20.75■□□□□ 0.91
CTCF-203ENST00000566078 DNAH10OSP0CZ25 163 aa20.75■□□□□ 0.91
CTCF-203ENST00000566078 SPATA45Q537H7 98 aa20.75■□□□□ 0.91
CTCF-203ENST00000566078 TMEM170BQ5T4T1 132 aa20.75■□□□□ 0.91
CTCF-203ENST00000566078 ZNF22P17026 224 aaPredicted RBP20.73■□□□□ 0.91
CTCF-203ENST00000566078 SEC11AP67812 179 aa20.73■□□□□ 0.91
CTCF-203ENST00000566078 COX6A2Q02221 97 aa20.72■□□□□ 0.91
CTCF-203ENST00000566078 HERVK_113P63121 156 aa20.71■□□□□ 0.91
CTCF-203ENST00000566078 SS18Q15532 418 aa20.71■□□□□ 0.91
CTCF-203ENST00000566078 ANKRD39Q53RE8 183 aa20.71■□□□□ 0.91
CTCF-203ENST00000566078 LINC00469Q8N7U9 141 aa20.71■□□□□ 0.91
CTCF-203ENST00000566078 PRR34Q9NV39 138 aa20.71■□□□□ 0.91
CTCF-203ENST00000566078 CRPP02741 224 aa20.7■□□□□ 0.9
CTCF-203ENST00000566078 IGLV5-45A0A087WSX0 123 aa20.67■□□□□ 0.9
CTCF-203ENST00000566078 ENHOQ6UWT2 76 aa20.67■□□□□ 0.9
CTCF-203ENST00000566078 UBE2WQ96B02 151 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms