RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 IGLV4-60A0A075B6I1 120 aa13.96□□□□□ -0.17
CLN3-212ENST00000564574 ANGP03950 147 aaKnown RBP13.96□□□□□ -0.17
CLN3-212ENST00000564574 A0A096LNJ9 63 aa13.95□□□□□ -0.18
CLN3-212ENST00000564574 IBA57-AS1B1ANH7 110 aa13.95□□□□□ -0.18
CLN3-212ENST00000564574 MRPS36P82909 103 aaKnown RBP13.95□□□□□ -0.18
CLN3-212ENST00000564574 TIMM17AQ99595 171 aa13.95□□□□□ -0.18
CLN3-212ENST00000564574 CDC42SE2Q9NRR3 84 aa13.95□□□□□ -0.18
CLN3-212ENST00000564574 KLK12Q9UKR0 248 aa13.95□□□□□ -0.18
CLN3-212ENST00000564574 NDUFA6P56556 154 aa13.94□□□□□ -0.18
CLN3-212ENST00000564574 ZNF664Q8N3J9 261 aa13.94□□□□□ -0.18
CLN3-212ENST00000564574 PMCHL1Q16048 86 aa13.93□□□□□ -0.18
CLN3-212ENST00000564574 ERASQ7Z444 233 aa13.93□□□□□ -0.18
CLN3-212ENST00000564574 TMEM141Q96I45 108 aa13.93□□□□□ -0.18
CLN3-212ENST00000564574 SCGB3A1Q96QR1 104 aa13.93□□□□□ -0.18
CLN3-212ENST00000564574 SACSQ9NZJ4 4579 aa13.93□□□□□ -0.18
CLN3-212ENST00000564574 IGIPA6NJ69 53 aa13.92□□□□□ -0.18
CLN3-212ENST00000564574 NUPR1O60356 82 aa13.92□□□□□ -0.18
CLN3-212ENST00000564574 CRPP02741 224 aa13.92□□□□□ -0.18
CLN3-212ENST00000564574 PDZD11Q5EBL8 140 aa13.92□□□□□ -0.18
CLN3-212ENST00000564574 PAPPA-AS1Q5QFB9 102 aa13.92□□□□□ -0.18
CLN3-212ENST00000564574 Q6ZR54 194 aa13.92□□□□□ -0.18
CLN3-212ENST00000564574 KRTAP1-5Q9BYS1 174 aa13.92□□□□□ -0.18
CLN3-212ENST00000564574 PRR34Q9NV39 138 aa13.92□□□□□ -0.18
CLN3-212ENST00000564574 Q6ZUT4 128 aa13.91□□□□□ -0.18
CLN3-212ENST00000564574 LINC00269Q8N2A0 174 aa13.91□□□□□ -0.18
CLN3-212ENST00000564574 IGLV4-3A0A075B6K6 122 aa13.9□□□□□ -0.18
CLN3-212ENST00000564574 TRAV8-3A0A0A6YYJ7 113 aa13.9□□□□□ -0.18
CLN3-212ENST00000564574 REG3AQ06141 175 aa13.9□□□□□ -0.18
CLN3-212ENST00000564574 FAM19A2Q8N3H0 131 aa13.9□□□□□ -0.18
CLN3-212ENST00000564574 M0R2N4 97 aa13.89□□□□□ -0.19
CLN3-212ENST00000564574 ATP5LO75964 103 aa13.89□□□□□ -0.19
CLN3-212ENST00000564574 S100A6P06703 90 aa13.89□□□□□ -0.19
CLN3-212ENST00000564574 Q6ZN92 141 aa13.89□□□□□ -0.19
CLN3-212ENST00000564574 UBE2WQ96B02 151 aa13.89□□□□□ -0.19
CLN3-212ENST00000564574 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.88□□□□□ -0.19
CLN3-212ENST00000564574 MIAQ16674 131 aa13.88□□□□□ -0.19
CLN3-212ENST00000564574 ENHOQ6UWT2 76 aa13.88□□□□□ -0.19
CLN3-212ENST00000564574 FAM104AQ969W3 186 aa13.88□□□□□ -0.19
CLN3-212ENST00000564574 TEX43Q6ZNM6 134 aa13.87□□□□□ -0.19
CLN3-212ENST00000564574 NFE4Q86UQ8 179 aa13.87□□□□□ -0.19
CLN3-212ENST00000564574 RMI2Q96E14 147 aa13.87□□□□□ -0.19
CLN3-212ENST00000564574 OPRPNQ99935 248 aaPredicted RBP13.87□□□□□ -0.19
CLN3-212ENST00000564574 TRAV8-4A0A0B4J246 113 aa13.86□□□□□ -0.19
CLN3-212ENST00000564574 LEPROTL1O95214 131 aa13.86□□□□□ -0.19
CLN3-212ENST00000564574 CLPSL2Q6UWE3 100 aa13.86□□□□□ -0.19
CLN3-212ENST00000564574 PACRGQ96M98 296 aaPredicted RBP13.86□□□□□ -0.19
CLN3-212ENST00000564574 AMELXQ99217 191 aa13.86□□□□□ -0.19
CLN3-212ENST00000564574 VCX2Q9H322 139 aa13.86□□□□□ -0.19
CLN3-212ENST00000564574 KMT2AQ03164 3969 aa13.86□□□□□ -0.19
CLN3-212ENST00000564574 CCL25O15444 150 aa13.85□□□□□ -0.19
CLN3-212ENST00000564574 RNASE13Q5GAN3 156 aaKnown RBP13.85□□□□□ -0.19
CLN3-212ENST00000564574 C6orf223Q8N319 242 aa13.84□□□□□ -0.19
CLN3-212ENST00000564574 C2orf88Q9BSF0 95 aa13.84□□□□□ -0.19
CLN3-212ENST00000564574 Q9HAA7 133 aa13.84□□□□□ -0.19
CLN3-212ENST00000564574 HSPB8Q9UJY1 196 aa13.84□□□□□ -0.19
CLN3-212ENST00000564574 IGKV3OR2-268A0A0C4DH90 116 aa13.83□□□□□ -0.2
CLN3-212ENST00000564574 LINC00959A0A1B0GUT2 108 aa13.83□□□□□ -0.2
CLN3-212ENST00000564574 IFITM10A6NMD0 228 aa13.83□□□□□ -0.2
CLN3-212ENST00000564574 SS18Q15532 418 aa13.83□□□□□ -0.2
CLN3-212ENST00000564574 BAALCQ8WXS3 180 aa13.83□□□□□ -0.2
CLN3-212ENST00000564574 IFI27L1Q96BM0 104 aa13.83□□□□□ -0.2
CLN3-212ENST00000564574 C1orf43Q9BWL3 253 aa13.83□□□□□ -0.2
CLN3-212ENST00000564574 COX11Q9Y6N1 276 aa13.83□□□□□ -0.2
CLN3-212ENST00000564574 HYDINQ4G0P3 5121 aa13.82□□□□□ -0.2
CLN3-212ENST00000564574 C1orf134Q5TEV5 83 aa13.82□□□□□ -0.2
CLN3-212ENST00000564574 LINC00173Q6ZV60 143 aa13.82□□□□□ -0.2
CLN3-212ENST00000564574 TM2D2Q9BX73 214 aa13.82□□□□□ -0.2
CLN3-212ENST00000564574 PMVKQ15126 192 aa13.81□□□□□ -0.2
CLN3-212ENST00000564574 IGKV2D-24A0A075B6R9 120 aa13.8□□□□□ -0.2
CLN3-212ENST00000564574 FABP4P15090 132 aa13.8□□□□□ -0.2
CLN3-212ENST00000564574 TRAV13-1A0A0B4J241 112 aa13.79□□□□□ -0.2
CLN3-212ENST00000564574 IGLV10-54A0A075B6I4 117 aa13.78□□□□□ -0.2
CLN3-212ENST00000564574 PRSS1P07477 247 aa13.78□□□□□ -0.2
CLN3-212ENST00000564574 UBE2D1P51668 147 aa13.78□□□□□ -0.2
CLN3-212ENST00000564574 SNRPEP62304 92 aaKnown RBP13.78□□□□□ -0.2
CLN3-212ENST00000564574 ZC2HC1BQ5TFG8 222 aa13.78□□□□□ -0.2
CLN3-212ENST00000564574 FAM19A3Q7Z5A8 133 aa13.78□□□□□ -0.2
CLN3-212ENST00000564574 HIST3H2BBQ8N257 126 aa13.78□□□□□ -0.2
CLN3-212ENST00000564574 CHCHD10Q8WYQ3 142 aaPredicted RBP13.78□□□□□ -0.2
CLN3-212ENST00000564574 CST9LQ9H4G1 147 aa13.78□□□□□ -0.2
CLN3-212ENST00000564574 TRAV12-1A0A0B4J245 112 aa13.77□□□□□ -0.21
CLN3-212ENST00000564574 C5orf52A6NGY3 159 aa13.77□□□□□ -0.21
CLN3-212ENST00000564574 S100A2P29034 98 aa13.77□□□□□ -0.21
CLN3-212ENST00000564574 EPPK1P58107 5090 aaKnown RBP13.77□□□□□ -0.21
CLN3-212ENST00000564574 PRSS29PA6NIE9 313 aa13.76□□□□□ -0.21
CLN3-212ENST00000564574 SEC11AP67812 179 aa13.76□□□□□ -0.21
CLN3-212ENST00000564574 Q6ZRN7 208 aaPredicted RBP13.76□□□□□ -0.21
CLN3-212ENST00000564574 KRTAP26-1Q6PEX3 210 aa13.75□□□□□ -0.21
CLN3-212ENST00000564574 CD164L2Q6UWJ8 174 aa13.75□□□□□ -0.21
CLN3-212ENST00000564574 MAP1LC3CQ9BXW4 147 aa13.75□□□□□ -0.21
CLN3-212ENST00000564574 BIRC6Q9NR09 4857 aa13.75□□□□□ -0.21
CLN3-212ENST00000564574 PSCAO43653 123 aa13.74□□□□□ -0.21
CLN3-212ENST00000564574 GAGE12HA6NDE8 117 aa13.73□□□□□ -0.21
CLN3-212ENST00000564574 XCL1P47992 114 aa13.73□□□□□ -0.21
CLN3-212ENST00000564574 LINC00242Q5T6M2 205 aa13.73□□□□□ -0.21
CLN3-212ENST00000564574 TMA7Q9Y2S6 64 aaKnown RBP13.73□□□□□ -0.21
CLN3-212ENST00000564574 HERVK_113P63121 156 aa13.72□□□□□ -0.21
CLN3-212ENST00000564574 HIST1H2BLQ99880 126 aa13.72□□□□□ -0.21
CLN3-212ENST00000564574 TINCRA0A1B0GVN0 87 aa13.71□□□□□ -0.21
CLN3-212ENST00000564574 FOXI1Q12951 378 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms