RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 FAM223BA6NKX1 122 aa4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 K7EIM0 57 aa4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 COX7A2LO14548 114 aa4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 MIAQ16674 131 aa4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 Q6ZRU5 148 aa4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 FP248Q71RG6 208 aaPredicted RBP4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 A0A087WVE0 104 aa4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 GPHB5Q86YW7 130 aa4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 GAFA1Q96PS6 74 aa4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 C22orf24Q9Y442 160 aa4.82□□□□□ -1.64
TSPAN3-209ENST00000560715 CHD6Q8TD26 2715 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 ARFGEF3Q5TH69 2177 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 IGKV3D-7A0A0C4DH55 119 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 M0R1W7 72 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 BAALC-AS2P0C853 105 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 MRPS36P82909 103 aaKnown RBP4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 ADAMTSL4-AS1Q5T5F5 129 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 DSPP15924 2871 aaKnown RBP4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 IGHV3-64A0A075B6Q5 118 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 IGHG2P01859 326 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 RPL39P62891 51 aaKnown RBP4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 BSPH1Q075Z2 132 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 BRK1Q8WUW1 75 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 SMAD5-AS1Q9Y6J3 95 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 BOD1L1Q8NFC6 3051 aa4.81□□□□□ -1.64
TSPAN3-209ENST00000560715 TRAV12-3A0A0B4J271 114 aa4.8□□□□□ -1.64
TSPAN3-209ENST00000560715 SMIM1B2RUZ4 78 aa4.8□□□□□ -1.64
TSPAN3-209ENST00000560715 PLA2G2AP14555 144 aa4.8□□□□□ -1.64
TSPAN3-209ENST00000560715 OCR1Q9BZK8 76 aa4.8□□□□□ -1.64
TSPAN3-209ENST00000560715 UBE2D4Q9Y2X8 147 aa4.8□□□□□ -1.64
TSPAN3-209ENST00000560715 MGAQ8IWI9 3026 aa4.8□□□□□ -1.64
TSPAN3-209ENST00000560715 KNCNA6PVL3 124 aa4.8□□□□□ -1.64
TSPAN3-209ENST00000560715 IGHV1-69P01742 117 aa4.8□□□□□ -1.64
TSPAN3-209ENST00000560715 CADP27708 2225 aa4.8□□□□□ -1.64
TSPAN3-209ENST00000560715 DNAL4O96015 105 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 MGPP08493 103 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 IGHV3-30-3P0DP02 117 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 CCL13Q99616 98 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 FAM208BQ5VWN6 2430 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 ZZEF1O43149 2961 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 H7BZZ5 65 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 CHTF8P0CG12 524 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 XCL1P47992 114 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 POLR2KP53803 58 aaKnown RBP4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 RNF182Q8N6D2 247 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 ZNF580Q9UK33 172 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 CEP295Q9C0D2 2601 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 C9orf66Q5T8R8 295 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 DEFB108BQ8NET1 73 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 COPS9Q8WXC6 57 aa4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 RNASE6Q93091 150 aaKnown RBP4.79□□□□□ -1.64
TSPAN3-209ENST00000560715 IGHV3-72A0A0B4J1Y9 119 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 CCL3L1P16619 93 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 FBXL19-AS1Q494R0 122 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 UNQ9165/PRO28630Q6UXU0 137 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 C20orf197Q8N268 126 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 VSIG2Q96IQ7 327 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 LINC00846Q9NV44 126 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 IGF2RP11717 2491 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 ATMQ13315 3056 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 PLXNB1O43157 2135 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 IGHV6-1A0A0B4J1U7 121 aa4.78□□□□□ -1.64
TSPAN3-209ENST00000560715 E7EQL1 145 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 TIMM17BO60830 172 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 LYPD5Q6UWN5 251 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 C11orf68Q9H3H3 251 aaKnown RBP4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 NDUFA12Q9UI09 145 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 BAHCC1Q9P281 2608 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 NBEAQ8NFP9 2946 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 IGHV3-16A0A0C4DH30 117 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 CXCL6P80162 114 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 Q8N2B8 174 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 ACACAQ13085 2346 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 DMXL2Q8TDJ6 3036 aa4.77□□□□□ -1.65
TSPAN3-209ENST00000560715 IGHV1-58A0A0C4DH39 117 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 COX7A1P24310 79 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 MP68P56378 58 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 CIRBPQ14011 172 aaKnown RBP4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 OPRPNQ99935 248 aaPredicted RBP4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 KAAG1Q9UBP8 84 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 PHLDA3Q9Y5J5 127 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 ANKRD11Q6UB99 2663 aaPredicted RBP4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 PLCE1Q9P212 2302 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 PKD1L2Q7Z442 2459 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 APC2O95996 2303 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 TRBV27A0A0K0K1C4 114 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 NDUFB3O43676 98 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 KRTAP3-1Q9BYR8 98 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 ABCA1O95477 2261 aa4.76□□□□□ -1.65
TSPAN3-209ENST00000560715 IGHV3OR16-9A0A0B4J2B5 98 aa4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 S100A4P26447 101 aaKnown RBP4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 RPL28P46779 137 aaKnown RBP4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 DAD1P61803 113 aa4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 C9orf47Q6ZRZ4 202 aa4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 MPLKIPQ8TAP9 179 aa4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 DEFB104AQ8WTQ1 72 aa4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 OBSCN-AS1Q96MR7 158 aa4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 S4R3C0 116 aa4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 ICE1Q9Y2F5 2266 aa4.75□□□□□ -1.65
TSPAN3-209ENST00000560715 BUB1B-PAK6H3BSN5 160 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms