RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 WFDC11Q8NEX6 87 aa8.32□□□□□ -1.08
CUX1-218ENST00000560541 NACAE9PAV3 2078 aa8.31□□□□□ -1.08
CUX1-218ENST00000560541 PRO0628Q9UI54 55 aa8.31□□□□□ -1.08
CUX1-218ENST00000560541 PTPN13Q12923 2485 aa8.31□□□□□ -1.08
CUX1-218ENST00000560541 TRAV13-1A0A0B4J241 112 aa8.31□□□□□ -1.08
CUX1-218ENST00000560541 EIF4EBP3O60516 100 aaPredicted RBP8.31□□□□□ -1.08
CUX1-218ENST00000560541 C20orf203Q8NBC4 194 aa8.31□□□□□ -1.08
CUX1-218ENST00000560541 Q9UF83 564 aa8.31□□□□□ -1.08
CUX1-218ENST00000560541 TMEM223A0PJW6 202 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 K7EQG2 157 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 MALP21145 153 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 PFN2P35080 140 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 C2CD3Q4AC94 2353 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 SETD2Q9BYW2 2564 aaPredicted RBP8.3□□□□□ -1.08
CUX1-218ENST00000560541 RBMY1A1P0DJD3 496 aaKnown RBP8.3□□□□□ -1.08
CUX1-218ENST00000560541 RBMY1CP0DJD4 496 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 RBMY1FQ15415 496 aaKnown RBP8.3□□□□□ -1.08
CUX1-218ENST00000560541 SMCR5Q8TEV8 140 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 CLEC2BQ92478 149 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 V9GYY9 64 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 IGLV4-3A0A075B6K6 122 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 H7C423 109 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 I3L3M4 83 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 DEFB136Q30KP8 78 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 HIST2H2BDQ6DRA6 164 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 MUSTN1Q8IVN3 82 aa8.3□□□□□ -1.08
CUX1-218ENST00000560541 B4DSR2 109 aa8.29□□□□□ -1.08
CUX1-218ENST00000560541 CIRBPQ14011 172 aaKnown RBP8.29□□□□□ -1.08
CUX1-218ENST00000560541 C2orf48Q96LS8 159 aa8.29□□□□□ -1.08
CUX1-218ENST00000560541 PRRC2AP48634 2157 aaKnown RBP8.29□□□□□ -1.08
CUX1-218ENST00000560541 TRAV8-3A0A0A6YYJ7 113 aa8.29□□□□□ -1.08
CUX1-218ENST00000560541 RHOHQ15669 191 aa8.29□□□□□ -1.08
CUX1-218ENST00000560541 WNK1Q9H4A3 2382 aa8.29□□□□□ -1.08
CUX1-218ENST00000560541 FBN2P35556 2912 aa8.29□□□□□ -1.08
CUX1-218ENST00000560541 LEPROTO15243 131 aa8.28□□□□□ -1.08
CUX1-218ENST00000560541 CRYGAP11844 174 aa8.28□□□□□ -1.08
CUX1-218ENST00000560541 TEX15Q9BXT5 2789 aa8.28□□□□□ -1.08
CUX1-218ENST00000560541 TRIAP1O43715 76 aa8.28□□□□□ -1.08
CUX1-218ENST00000560541 CD28P10747 220 aa8.28□□□□□ -1.08
CUX1-218ENST00000560541 HOXD3P31249 432 aaPredicted RBP8.28□□□□□ -1.08
CUX1-218ENST00000560541 NPC2P61916 151 aa8.28□□□□□ -1.08
CUX1-218ENST00000560541 EPG5Q9HCE0 2579 aa8.28□□□□□ -1.08
CUX1-218ENST00000560541 SONP18583 2426 aaKnown RBP8.28□□□□□ -1.08
CUX1-218ENST00000560541 A8MZ25 164 aa8.28□□□□□ -1.08
CUX1-218ENST00000560541 PRORYQ9H606 182 aa8.28□□□□□ -1.08
CUX1-218ENST00000560541 C18orf65Q6ZTR6 163 aa8.27□□□□□ -1.09
CUX1-218ENST00000560541 PRSS2P07478 247 aa8.27□□□□□ -1.09
CUX1-218ENST00000560541 CHD6Q8TD26 2715 aa8.27□□□□□ -1.09
CUX1-218ENST00000560541 NAV2Q8IVL1 2488 aa8.26□□□□□ -1.09
CUX1-218ENST00000560541 IGHV3-30-3P0DP02 117 aa8.26□□□□□ -1.09
CUX1-218ENST00000560541 DEFB131AP59861 70 aa8.26□□□□□ -1.09
CUX1-218ENST00000560541 Q6ZSV7 163 aa8.26□□□□□ -1.09
CUX1-218ENST00000560541 TMEM86BQ8N661 226 aa8.26□□□□□ -1.09
CUX1-218ENST00000560541 TMEM263Q8WUH6 116 aaKnown RBP8.26□□□□□ -1.09
CUX1-218ENST00000560541 IGHV3-38A0A0C4DH36 116 aa8.26□□□□□ -1.09
CUX1-218ENST00000560541 A0A0J9YXY3 114 aa8.26□□□□□ -1.09
CUX1-218ENST00000560541 SLURP1P55000 103 aa8.26□□□□□ -1.09
CUX1-218ENST00000560541 Q6ZSN1 163 aa8.25□□□□□ -1.09
CUX1-218ENST00000560541 TIMM21Q9BVV7 248 aa8.25□□□□□ -1.09
CUX1-218ENST00000560541 TMEM258P61165 79 aa8.25□□□□□ -1.09
CUX1-218ENST00000560541 IL17DQ8TAD2 202 aa8.25□□□□□ -1.09
CUX1-218ENST00000560541 FAM104AQ969W3 186 aa8.25□□□□□ -1.09
CUX1-218ENST00000560541 AKAP9Q99996 3911 aa8.25□□□□□ -1.09
CUX1-218ENST00000560541 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.24□□□□□ -1.09
CUX1-218ENST00000560541 IGKV2-29A2NJV5 120 aaPredicted RBP8.24□□□□□ -1.09
CUX1-218ENST00000560541 NF1P21359 2839 aa8.24□□□□□ -1.09
CUX1-218ENST00000560541 JMJD1CQ15652 2540 aa8.24□□□□□ -1.09
CUX1-218ENST00000560541 NIPBLQ6KC79 2804 aaeCLIP8.24□□□□□ -1.09
CUX1-218ENST00000560541 ADAMTSL4-AS1Q5T5F5 129 aa8.23□□□□□ -1.09
CUX1-218ENST00000560541 IMUPQ9GZP8 106 aa8.23□□□□□ -1.09
CUX1-218ENST00000560541 ZNF462Q96JM2 2506 aa8.23□□□□□ -1.09
CUX1-218ENST00000560541 RBMY1BA6NDE4 496 aaKnown RBP8.23□□□□□ -1.09
CUX1-218ENST00000560541 RBMY1EA6NEQ0 496 aaKnown RBP8.23□□□□□ -1.09
CUX1-218ENST00000560541 RBMY1DP0C7P1 496 aaKnown RBP8.23□□□□□ -1.09
CUX1-218ENST00000560541 LINC00643Q86TS7 51 aa8.23□□□□□ -1.09
CUX1-218ENST00000560541 ZNF469Q96JG9 3925 aaPredicted RBP8.23□□□□□ -1.09
CUX1-218ENST00000560541 KHDC1LQ5JSQ8 128 aa8.22□□□□□ -1.09
CUX1-218ENST00000560541 C1orf195Q5TG92 126 aa8.22□□□□□ -1.09
CUX1-218ENST00000560541 SDIM1Q6ZPB5 146 aa8.22□□□□□ -1.09
CUX1-218ENST00000560541 IGKV3D-7A0A0C4DH55 119 aa8.22□□□□□ -1.09
CUX1-218ENST00000560541 FAM240AA0A1B0GVK7 77 aa8.22□□□□□ -1.09
CUX1-218ENST00000560541 DAND5Q8N907 189 aa8.22□□□□□ -1.09
CUX1-218ENST00000560541 A0A0B4J2C4 111 aa8.22□□□□□ -1.09
CUX1-218ENST00000560541 A0A1W2PRX2 142 aa8.22□□□□□ -1.09
CUX1-218ENST00000560541 NDUFA12Q9UI09 145 aa8.22□□□□□ -1.09
CUX1-218ENST00000560541 LINC01356Q8N9X3 169 aa8.21□□□□□ -1.09
CUX1-218ENST00000560541 BRK1Q8WUW1 75 aa8.21□□□□□ -1.09
CUX1-218ENST00000560541 A0A087WVE0 104 aa8.21□□□□□ -1.1
CUX1-218ENST00000560541 ATOX1O00244 68 aa8.21□□□□□ -1.1
CUX1-218ENST00000560541 LITAFQ99732 161 aa8.21□□□□□ -1.1
CUX1-218ENST00000560541 ZNF702PQ9H963 129 aa8.21□□□□□ -1.1
CUX1-218ENST00000560541 CCDC168Q8NDH2 2452 aa8.21□□□□□ -1.1
CUX1-218ENST00000560541 MRPS36P82909 103 aaKnown RBP8.2□□□□□ -1.1
CUX1-218ENST00000560541 TMEM61Q8N0U2 210 aa8.2□□□□□ -1.1
CUX1-218ENST00000560541 LINC00467Q9BRT7 94 aa8.2□□□□□ -1.1
CUX1-218ENST00000560541 LINC01561Q8N1V8 128 aa8.2□□□□□ -1.1
CUX1-218ENST00000560541 PEMTQ9UBM1 199 aa8.2□□□□□ -1.1
CUX1-218ENST00000560541 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.2□□□□□ -1.1
CUX1-218ENST00000560541 IGHV1-58A0A0C4DH39 117 aa8.2□□□□□ -1.1
CUX1-218ENST00000560541 UBE2E2Q96LR5 201 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms