RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 IGKV2D-24A0A075B6R9 120 aa14.48□□□□□ -0.09
SNX1-210ENST00000560260 Q6ZUT4 128 aa14.48□□□□□ -0.09
SNX1-210ENST00000560260 MAPKAPK5-AS1Q8N8E1 139 aa14.48□□□□□ -0.09
SNX1-210ENST00000560260 TMEM18Q96B42 140 aa14.48□□□□□ -0.09
SNX1-210ENST00000560260 TMEM101Q96IK0 257 aa14.48□□□□□ -0.09
SNX1-210ENST00000560260 TIMM21Q9BVV7 248 aa14.48□□□□□ -0.09
SNX1-210ENST00000560260 CDC42SE2Q9NRR3 84 aa14.48□□□□□ -0.09
SNX1-210ENST00000560260 A0A1B0GVY2 172 aa14.47□□□□□ -0.09
SNX1-210ENST00000560260 K7EMI3 77 aa14.47□□□□□ -0.09
SNX1-210ENST00000560260 MIAQ16674 131 aa14.47□□□□□ -0.09
SNX1-210ENST00000560260 ORMDL2Q53FV1 153 aa14.47□□□□□ -0.09
SNX1-210ENST00000560260 RNASE13Q5GAN3 156 aaKnown RBP14.47□□□□□ -0.09
SNX1-210ENST00000560260 KRTAP26-1Q6PEX3 210 aa14.47□□□□□ -0.09
SNX1-210ENST00000560260 CSDC2Q9Y534 153 aaKnown RBP14.47□□□□□ -0.09
SNX1-210ENST00000560260 IGKV3OR2-268A0A0C4DH90 116 aa14.46□□□□□ -0.09
SNX1-210ENST00000560260 IGLV10-54A0A075B6I4 117 aa14.45□□□□□ -0.1
SNX1-210ENST00000560260 C2orf66Q6UXQ4 117 aa14.45□□□□□ -0.1
SNX1-210ENST00000560260 ZNF664Q8N3J9 261 aa14.45□□□□□ -0.1
SNX1-210ENST00000560260 RMI2Q96E14 147 aa14.45□□□□□ -0.1
SNX1-210ENST00000560260 OPRPNQ99935 248 aaPredicted RBP14.45□□□□□ -0.1
SNX1-210ENST00000560260 WFDC2Q14508 124 aa14.44□□□□□ -0.1
SNX1-210ENST00000560260 FA2HQ7L5A8 372 aa14.44□□□□□ -0.1
SNX1-210ENST00000560260 C1orf43Q9BWL3 253 aa14.44□□□□□ -0.1
SNX1-210ENST00000560260 TM2D2Q9BX73 214 aa14.44□□□□□ -0.1
SNX1-210ENST00000560260 SPANXA1Q9NS26 97 aa14.44□□□□□ -0.1
SNX1-210ENST00000560260 LRCOL1A6NCL2 159 aa14.43□□□□□ -0.1
SNX1-210ENST00000560260 PSCAO43653 123 aa14.43□□□□□ -0.1
SNX1-210ENST00000560260 DGAT2L7PQ6IED9 249 aa14.43□□□□□ -0.1
SNX1-210ENST00000560260 CYSLTR1Q9Y271 337 aa14.43□□□□□ -0.1
SNX1-210ENST00000560260 PKHD1P08F94 4074 aa14.43□□□□□ -0.1
SNX1-210ENST00000560260 A0A087WTM6 91 aa14.42□□□□□ -0.1
SNX1-210ENST00000560260 SMAGPQ0VAQ4 97 aa14.42□□□□□ -0.1
SNX1-210ENST00000560260 PYGO1Q9Y3Y4 419 aa14.41□□□□□ -0.1
SNX1-210ENST00000560260 BIRC6Q9NR09 4857 aa14.41□□□□□ -0.1
SNX1-210ENST00000560260 IGLV4-3A0A075B6K6 122 aa14.41□□□□□ -0.1
SNX1-210ENST00000560260 A0A096LNJ9 63 aa14.41□□□□□ -0.1
SNX1-210ENST00000560260 MRPS36P82909 103 aaKnown RBP14.41□□□□□ -0.1
SNX1-210ENST00000560260 TOMM6Q96B49 74 aa14.41□□□□□ -0.1
SNX1-210ENST00000560260 COX11Q9Y6N1 276 aa14.41□□□□□ -0.1
SNX1-210ENST00000560260 TRAV8-4A0A0B4J246 113 aa14.4□□□□□ -0.1
SNX1-210ENST00000560260 LINC00959A0A1B0GUT2 108 aa14.4□□□□□ -0.1
SNX1-210ENST00000560260 IGIPA6NJ69 53 aa14.4□□□□□ -0.1
SNX1-210ENST00000560260 LECT2O14960 151 aa14.4□□□□□ -0.1
SNX1-210ENST00000560260 LINC00614P0C842 121 aa14.4□□□□□ -0.1
SNX1-210ENST00000560260 BAALCQ8WXS3 180 aa14.4□□□□□ -0.1
SNX1-210ENST00000560260 AP5S1Q9NUS5 200 aa14.4□□□□□ -0.1
SNX1-210ENST00000560260 CHCHD10Q8WYQ3 142 aaPredicted RBP14.39□□□□□ -0.11
SNX1-210ENST00000560260 GAGE12HA6NDE8 117 aa14.37□□□□□ -0.11
SNX1-210ENST00000560260 LINC00310P59036 64 aa14.37□□□□□ -0.11
SNX1-210ENST00000560260 PMCHL1Q16048 86 aa14.37□□□□□ -0.11
SNX1-210ENST00000560260 LINC00173Q6ZV60 143 aa14.37□□□□□ -0.11
SNX1-210ENST00000560260 LRP1BQ9NZR2 4599 aa14.36□□□□□ -0.11
SNX1-210ENST00000560260 KRTAP10-2P60368 255 aa14.36□□□□□ -0.11
SNX1-210ENST00000560260 ZC2HC1BQ5TFG8 222 aa14.36□□□□□ -0.11
SNX1-210ENST00000560260 TRAV13-1A0A0B4J241 112 aa14.35□□□□□ -0.11
SNX1-210ENST00000560260 CCL25O15444 150 aa14.35□□□□□ -0.11
SNX1-210ENST00000560260 FUSP35637 526 aaKnown RBP eCLIP14.35□□□□□ -0.11
SNX1-210ENST00000560260 RAB5BP61020 215 aa14.35□□□□□ -0.11
SNX1-210ENST00000560260 TMEM141Q96I45 108 aa14.35□□□□□ -0.11
SNX1-210ENST00000560260 G0S2P27469 103 aa14.34□□□□□ -0.11
SNX1-210ENST00000560260 XCL1P47992 114 aa14.34□□□□□ -0.11
SNX1-210ENST00000560260 FOXI1Q12951 378 aa14.34□□□□□ -0.11
SNX1-210ENST00000560260 TIMM17AQ99595 171 aa14.34□□□□□ -0.11
SNX1-210ENST00000560260 IFITM10A6NMD0 228 aa14.33□□□□□ -0.12
SNX1-210ENST00000560260 SS18Q15532 418 aa14.33□□□□□ -0.12
SNX1-210ENST00000560260 SCGB3A1Q96QR1 104 aa14.33□□□□□ -0.12
SNX1-210ENST00000560260 AMELXQ99217 191 aa14.33□□□□□ -0.12
SNX1-210ENST00000560260 HBDP02042 147 aa14.32□□□□□ -0.12
SNX1-210ENST00000560260 ERASQ7Z444 233 aa14.32□□□□□ -0.12
SNX1-210ENST00000560260 SPATA12Q7Z6I5 190 aa14.32□□□□□ -0.12
SNX1-210ENST00000560260 BAGE3Q86Y29 109 aa14.32□□□□□ -0.12
SNX1-210ENST00000560260 Q8N814 137 aa14.32□□□□□ -0.12
SNX1-210ENST00000560260 CHCHD1Q96BP2 118 aaKnown RBP14.32□□□□□ -0.12
SNX1-210ENST00000560260 USP17L23D6RBM5 183 aa14.31□□□□□ -0.12
SNX1-210ENST00000560260 SERF1AO75920 110 aa14.31□□□□□ -0.12
SNX1-210ENST00000560260 NPSP0C0P6 89 aa14.31□□□□□ -0.12
SNX1-210ENST00000560260 HIST1H2BKO60814 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST1H2BJP06899 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST1H2BOP23527 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST1H2BBP33778 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST1H2BDP58876 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST1H2BCP62807 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST2H2BEQ16778 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 PDZD11Q5EBL8 140 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.3□□□□□ -0.12
SNX1-210ENST00000560260 TEX43Q6ZNM6 134 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST1H2BHQ93079 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST1H2BNQ99877 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 HIST1H2BMQ99879 126 aa14.3□□□□□ -0.12
SNX1-210ENST00000560260 C1orf196B1AJZ1 125 aa14.29□□□□□ -0.12
SNX1-210ENST00000560260 EREGO14944 169 aa14.29□□□□□ -0.12
SNX1-210ENST00000560260 NUPR1O60356 82 aa14.29□□□□□ -0.12
SNX1-210ENST00000560260 UBE2D1P51668 147 aa14.28□□□□□ -0.12
SNX1-210ENST00000560260 CD164L2Q6UWJ8 174 aa14.28□□□□□ -0.12
SNX1-210ENST00000560260 Q6ZN92 141 aa14.28□□□□□ -0.12
SNX1-210ENST00000560260 LINC01549A6NIU2 74 aa14.27□□□□□ -0.12
SNX1-210ENST00000560260 C15orf56Q8N910 161 aa14.27□□□□□ -0.12
SNX1-210ENST00000560260 VCX2Q9H322 139 aa14.27□□□□□ -0.12
SNX1-210ENST00000560260 LINC00242Q5T6M2 205 aa14.26□□□□□ -0.13
SNX1-210ENST00000560260 FAM19A2Q8N3H0 131 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 896.7 ms