RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CKS1BP61024 79 aa7.91□□□□□ -1.14
USP3-218ENST00000560202 SMAGPQ0VAQ4 97 aa7.91□□□□□ -1.14
USP3-218ENST00000560202 RHOHQ15669 191 aa7.91□□□□□ -1.14
USP3-218ENST00000560202 C12orf74Q32Q52 190 aa7.91□□□□□ -1.14
USP3-218ENST00000560202 GTSF1LQ9H1H1 148 aa7.91□□□□□ -1.14
USP3-218ENST00000560202 DNAH9Q9NYC9 4486 aa7.91□□□□□ -1.14
USP3-218ENST00000560202 RPL36AP83881 106 aaKnown RBP7.9□□□□□ -1.14
USP3-218ENST00000560202 ZNRF2Q8NHG8 242 aa7.9□□□□□ -1.14
USP3-218ENST00000560202 PHLDA1Q8WV24 401 aaPredicted RBP7.9□□□□□ -1.14
USP3-218ENST00000560202 RPL36ALQ969Q0 106 aaKnown RBP7.9□□□□□ -1.14
USP3-218ENST00000560202 RAB37Q96AX2 223 aa7.9□□□□□ -1.14
USP3-218ENST00000560202 PRO0255Q9UI72 69 aa7.9□□□□□ -1.14
USP3-218ENST00000560202 TRBV7-3A0A075B6L6 115 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 I3L3M4 83 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 K7EMI3 77 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 CRYBA4P53673 196 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 LAGE3Q14657 143 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 CEND1Q8N111 149 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 KIR2DL4Q99706 377 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 PRADC1Q9BSG0 188 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 CHAC1Q9BUX1 264 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 LOC100131303A0A0U1RQF7 123 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 GAGE12JA6NER3 117 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 HTN3P15516 51 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 GCSHP23434 173 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 NMUP48645 174 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 GAGE4Q13068 117 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 GAGE5Q13069 117 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 GAGE13Q4V321 117 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 C11orf45Q8TAV5 145 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 DEFB104AQ8WTQ1 72 aa7.89□□□□□ -1.15
USP3-218ENST00000560202 TENM3Q9P273 2699 aa7.88□□□□□ -1.15
USP3-218ENST00000560202 F5H768 121 aa7.88□□□□□ -1.15
USP3-218ENST00000560202 FCER1GP30273 86 aa7.88□□□□□ -1.15
USP3-218ENST00000560202 ORMDL2Q53FV1 153 aa7.88□□□□□ -1.15
USP3-218ENST00000560202 SPANXA1Q9NS26 97 aa7.88□□□□□ -1.15
USP3-218ENST00000560202 CYSLTR1Q9Y271 337 aa7.88□□□□□ -1.15
USP3-218ENST00000560202 A0A1B0GWB2 263 aa7.87□□□□□ -1.15
USP3-218ENST00000560202 IGLL5B9A064 214 aa7.87□□□□□ -1.15
USP3-218ENST00000560202 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.87□□□□□ -1.15
USP3-218ENST00000560202 PAX4O43316 350 aa7.87□□□□□ -1.15
USP3-218ENST00000560202 TSHBP01222 138 aa7.87□□□□□ -1.15
USP3-218ENST00000560202 UBE2D3P61077 147 aa7.87□□□□□ -1.15
USP3-218ENST00000560202 UBE2D2P62837 147 aa7.87□□□□□ -1.15
USP3-218ENST00000560202 LYRM7Q5U5X0 104 aa7.87□□□□□ -1.15
USP3-218ENST00000560202 Q6ZTC4 211 aa7.87□□□□□ -1.15
USP3-218ENST00000560202 MEGF8Q7Z7M0 2845 aa7.87□□□□□ -1.15
USP3-218ENST00000560202 IGHV3-38A0A0C4DH36 116 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 DPM2O94777 84 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 IGKCP01834 107 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 NHLRC4P0CG21 123 aaPredicted RBP7.86□□□□□ -1.15
USP3-218ENST00000560202 GYPEP15421 78 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 FXYD2P54710 66 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 NANOS2P60321 138 aaKnown RBP7.86□□□□□ -1.15
USP3-218ENST00000560202 DAZ4Q86SG3 579 aaKnown RBP7.86□□□□□ -1.15
USP3-218ENST00000560202 PCP2Q8IVA1 136 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 VSIG2Q96IQ7 327 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 DAZ3Q9NR90 486 aaKnown RBP7.86□□□□□ -1.15
USP3-218ENST00000560202 TRBV25-1A0A075B6N4 114 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 TRAV26-1A0A087WT03 109 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 A0A0J9YY99 117 aa7.86□□□□□ -1.15
USP3-218ENST00000560202 H3BMG7 143 aa7.85□□□□□ -1.15
USP3-218ENST00000560202 LINC00694P0DN24 101 aa7.85□□□□□ -1.15
USP3-218ENST00000560202 ODF1Q14990 250 aa7.85□□□□□ -1.15
USP3-218ENST00000560202 NAA38Q9BRA0 125 aaKnown RBP7.85□□□□□ -1.15
USP3-218ENST00000560202 GEMIN7Q9H840 131 aaKnown RBP7.85□□□□□ -1.15
USP3-218ENST00000560202 TCTAP57738 103 aa7.84□□□□□ -1.15
USP3-218ENST00000560202 WFDC2Q14508 124 aa7.84□□□□□ -1.15
USP3-218ENST00000560202 NHP2Q9NX24 153 aaKnown RBP7.84□□□□□ -1.15
USP3-218ENST00000560202 PRO0461Q9UI25 63 aa7.84□□□□□ -1.15
USP3-218ENST00000560202 PLNP26678 52 aa7.83□□□□□ -1.16
USP3-218ENST00000560202 C2orf66Q6UXQ4 117 aa7.83□□□□□ -1.16
USP3-218ENST00000560202 TOMM6Q96B49 74 aa7.83□□□□□ -1.16
USP3-218ENST00000560202 DEFB131BA0A096LNP1 70 aa7.83□□□□□ -1.16
USP3-218ENST00000560202 A6NJY4 79 aa7.83□□□□□ -1.16
USP3-218ENST00000560202 TSPAN13O95857 204 aa7.83□□□□□ -1.16
USP3-218ENST00000560202 NTM-AS1Q6ZSK4 140 aa7.83□□□□□ -1.16
USP3-218ENST00000560202 C20orf203Q8NBC4 194 aa7.83□□□□□ -1.16
USP3-218ENST00000560202 CHCHD7Q9BUK0 85 aa7.82□□□□□ -1.16
USP3-218ENST00000560202 A0A096LPF7 62 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 TRAV10A0A0B4J240 114 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 LINC01549A6NIU2 74 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 TMEM262E9PQX1 116 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 H3BNG1 76 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 APOMO95445 188 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 PRSS1P07477 247 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 RPL39P62891 51 aaKnown RBP7.81□□□□□ -1.16
USP3-218ENST00000560202 FOXI1Q12951 378 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 MRPL23Q16540 153 aaKnown RBP7.81□□□□□ -1.16
USP3-218ENST00000560202 ETDBQ3ZM63 59 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 SCGB3A1Q96QR1 104 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 ICOSQ9Y6W8 199 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 COL7A1Q02388 2944 aa7.81□□□□□ -1.16
USP3-218ENST00000560202 PRKDCP78527 4128 aaKnown RBP7.81□□□□□ -1.16
USP3-218ENST00000560202 TRAV12-1A0A0B4J245 112 aa7.8□□□□□ -1.16
USP3-218ENST00000560202 M0QXV9 152 aa7.8□□□□□ -1.16
USP3-218ENST00000560202 ERG28Q9UKR5 140 aa7.8□□□□□ -1.16
USP3-218ENST00000560202 TRBV6-8A0A0A6YYG3 113 aa7.79□□□□□ -1.16
USP3-218ENST00000560202 ZC2HC1BQ5TFG8 222 aa7.79□□□□□ -1.16
USP3-218ENST00000560202 PPDPFLQ8WWR9 84 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms