RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	UBE2B	P63146	152 aa		3.6	□□□□□ -1.83
SYNE2-223	ENST00000557005	LINC00242	Q5T6M2	205 aa		3.6	□□□□□ -1.83
SYNE2-223	ENST00000557005	TRBV6-8	A0A0A6YYG3	113 aa		3.6	□□□□□ -1.83
SYNE2-223	ENST00000557005	IBA57-AS1	B1ANH7	110 aa		3.6	□□□□□ -1.83
SYNE2-223	ENST00000557005	PSCA	O43653	123 aa		3.6	□□□□□ -1.83
SYNE2-223	ENST00000557005	KIR2DL5B	Q8NHK3	375 aa		3.6	□□□□□ -1.83
SYNE2-223	ENST00000557005	PRO3102	Q9H379	93 aa		3.6	□□□□□ -1.83
SYNE2-223	ENST00000557005	HEATR1	Q9H583	2144 aa	Known RBP	3.6	□□□□□ -1.83
SYNE2-223	ENST00000557005	CDC42SE2	Q9NRR3	84 aa		3.59	□□□□□ -1.83
SYNE2-223	ENST00000557005	TRBV7-7	A0A0K0K1E9	115 aa		3.59	□□□□□ -1.83
SYNE2-223	ENST00000557005	DEFB135	Q30KP9	77 aa		3.59	□□□□□ -1.83
SYNE2-223	ENST00000557005	DOCK7	Q96N67	2140 aa		3.59	□□□□□ -1.83
SYNE2-223	ENST00000557005	KIF25-AS1	Q9Y6Z4	181 aa		3.59	□□□□□ -1.83
SYNE2-223	ENST00000557005	NDUFS5	O43920	106 aa		3.59	□□□□□ -1.83
SYNE2-223	ENST00000557005	FUS	P35637	526 aa	Known RBP eCLIP	3.59	□□□□□ -1.83
SYNE2-223	ENST00000557005	SBSPON	Q8IVN8	264 aa		3.59	□□□□□ -1.83
SYNE2-223	ENST00000557005	FAM218A	Q96MZ4	157 aa		3.59	□□□□□ -1.83
SYNE2-223	ENST00000557005	CCL18	P55774	89 aa		3.59	□□□□□ -1.84
SYNE2-223	ENST00000557005	FAM222A	Q5U5X8	452 aa		3.59	□□□□□ -1.84
SYNE2-223	ENST00000557005	ATP5EP2	Q5VTU8	51 aa		3.59	□□□□□ -1.84
SYNE2-223	ENST00000557005	ZNF843	Q8N446	348 aa		3.59	□□□□□ -1.84
SYNE2-223	ENST00000557005	KLK12	Q9UKR0	248 aa		3.59	□□□□□ -1.84
SYNE2-223	ENST00000557005	LINC00959	A0A1B0GUT2	108 aa		3.59	□□□□□ -1.84
SYNE2-223	ENST00000557005	C9orf116	Q5BN46	136 aa	Predicted RBP	3.59	□□□□□ -1.84
SYNE2-223	ENST00000557005	SHANK1	Q9Y566	2161 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005	LINC00315	P59091	139 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005	C4orf26	Q17RF5	130 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005	C3orf84	H3BNL1	204 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005		H3BQ85	93 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005	PLA2G2A	P14555	144 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005	DNAH14	Q0VDD8	3507 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005	C6orf99	Q4VX62	202 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005		Q8N814	137 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005	AVP	P01185	164 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005	PI4KA	P42356	2102 aa		3.58	□□□□□ -1.84
SYNE2-223	ENST00000557005	ETDC	A0A1B0GVM5	59 aa		3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005	BBC3	Q96PG8	261 aa	Predicted RBP	3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005	IGLV4-60	A0A075B6I1	120 aa		3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005	RPL28	P46779	137 aa	Known RBP	3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005	ZNF407	Q9C0G0	2248 aa		3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005		Q8N2B8	174 aa		3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005	PRORY	Q9H606	182 aa		3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005	BRCA2	P51587	3418 aa		3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005	DEFB121	Q5J5C9	76 aa		3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005	LINC00846	Q9NV44	126 aa		3.57	□□□□□ -1.84
SYNE2-223	ENST00000557005	LINC00482	Q8N8I6	264 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005	TRBV6-4	A0A1B0GX49	114 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005	C9orf66	Q5T8R8	295 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005	FAM19A1	Q7Z5A9	133 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005	XAGE1A	Q9HD64	81 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005	LRCOL1	A6NCL2	159 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005	LITAF	Q99732	161 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005	C6orf223	Q8N319	242 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005	RMI2	Q96E14	147 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005	SERP1	Q9Y6X1	66 aa		3.56	□□□□□ -1.84
SYNE2-223	ENST00000557005		A0A1W2PPR1	153 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	FREM1	Q5H8C1	2179 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	SPTBN5	Q9NRC6	3674 aa	Known RBP	3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005		A8MTW9	85 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	BPY2	O14599	106 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	LINC00337	Q8N6G1	96 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005		Q9UF83	564 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	CACNA1D	Q01668	2161 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	SOSTDC1	Q6X4U4	206 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	WFDC10B	Q8IUB3	73 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	PRO0255	Q9UI72	69 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	IGKV2-28	A0A075B6P5	120 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	EIF4EBP3	O60516	100 aa	Predicted RBP	3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	IGKV2D-28	P01615	120 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005	SPART-AS1	P0CW21	52 aa		3.55	□□□□□ -1.84
SYNE2-223	ENST00000557005		Q6ZQY7	126 aa		3.54	□□□□□ -1.84
SYNE2-223	ENST00000557005	NHLRC4	P0CG21	123 aa	Predicted RBP	3.54	□□□□□ -1.84
SYNE2-223	ENST00000557005	UBE2A	P49459	152 aa		3.54	□□□□□ -1.84
SYNE2-223	ENST00000557005	C1orf158	Q8N1D5	194 aa		3.54	□□□□□ -1.84
SYNE2-223	ENST00000557005	DOCK10	Q96BY6	2186 aa		3.54	□□□□□ -1.84
SYNE2-223	ENST00000557005		A0A0J9YWU9	116 aa		3.54	□□□□□ -1.84
SYNE2-223	ENST00000557005	RPL37AP8	A6NKH3	93 aa		3.54	□□□□□ -1.84
SYNE2-223	ENST00000557005	MIF	P14174	115 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	COX17	Q14061	63 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	PRR4	Q16378	134 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	FHL2	Q14192	279 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005		Q8IZM0	81 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005		V9GYY9	64 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	TRAV7	A0A075B6U4	112 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	PDE6G	P18545	87 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	MP68	P56378	58 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	CABIN1	Q9Y6J0	2220 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	C1orf195	Q5TG92	126 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	CD164L2	Q6UWJ8	174 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	SPTSSB	Q8NFR3	76 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	ATP5E	P56381	51 aa	Predicted RBP	3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	C11orf72	Q8NBR9	251 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	CELA1	Q9UNI1	258 aa		3.53	□□□□□ -1.84
SYNE2-223	ENST00000557005	IGLV5-39	A0A0G2JS06	123 aa		3.52	□□□□□ -1.85
SYNE2-223	ENST00000557005	SZT2	Q5T011	3432 aa		3.52	□□□□□ -1.85
SYNE2-223	ENST00000557005	ZNF73	O43830	326 aa	Predicted RBP	3.52	□□□□□ -1.85
SYNE2-223	ENST00000557005	DNAJC13	O75165	2243 aa		3.52	□□□□□ -1.85
SYNE2-223	ENST00000557005	LINC01547	P58512	204 aa	Predicted RBP	3.52	□□□□□ -1.85
SYNE2-223	ENST00000557005	BEAN1	Q3B7T3	259 aa		3.52	□□□□□ -1.85
SYNE2-223	ENST00000557005	ODF3L2	Q3SX64	289 aa		3.52	□□□□□ -1.85

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