RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 MRPL52Q86TS9 123 aaKnown RBP7.58□□□□□ -1.2
CCDC88C-212ENST00000556767 ZNF664Q8N3J9 261 aa7.58□□□□□ -1.2
CCDC88C-212ENST00000556767 Q8N814 137 aa7.58□□□□□ -1.2
CCDC88C-212ENST00000556767 NXT2Q9NPJ8 142 aaKnown RBP7.58□□□□□ -1.2
CCDC88C-212ENST00000556767 PGPEP1Q9NXJ5 209 aa7.58□□□□□ -1.2
CCDC88C-212ENST00000556767 UBE2D4Q9Y2X8 147 aa7.58□□□□□ -1.2
CCDC88C-212ENST00000556767 DNAH17Q9UFH2 4485 aa7.58□□□□□ -1.2
CCDC88C-212ENST00000556767 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.57□□□□□ -1.2
CCDC88C-212ENST00000556767 IGLV5-52A0A0A0MRZ9 124 aa7.57□□□□□ -1.2
CCDC88C-212ENST00000556767 IFI27P40305 119 aaPredicted RBP7.57□□□□□ -1.2
CCDC88C-212ENST00000556767 RNASE13Q5GAN3 156 aaKnown RBP7.57□□□□□ -1.2
CCDC88C-212ENST00000556767 CBLN2Q8IUK8 224 aa7.57□□□□□ -1.2
CCDC88C-212ENST00000556767 PRSS3P2Q8NHM4 247 aa7.57□□□□□ -1.2
CCDC88C-212ENST00000556767 SMCO4Q9NRQ5 59 aa7.57□□□□□ -1.2
CCDC88C-212ENST00000556767 CDC42SE2Q9NRR3 84 aa7.57□□□□□ -1.2
CCDC88C-212ENST00000556767 GAGE12HA6NDE8 117 aa7.56□□□□□ -1.2
CCDC88C-212ENST00000556767 SS18Q15532 418 aa7.56□□□□□ -1.2
CCDC88C-212ENST00000556767 ORMDL2Q53FV1 153 aa7.56□□□□□ -1.2
CCDC88C-212ENST00000556767 CDPF1Q6NVV7 123 aa7.56□□□□□ -1.2
CCDC88C-212ENST00000556767 CHCHD10Q8WYQ3 142 aaPredicted RBP7.56□□□□□ -1.2
CCDC88C-212ENST00000556767 ALKBH7Q9BT30 221 aaPredicted RBP7.56□□□□□ -1.2
CCDC88C-212ENST00000556767 TIMM21Q9BVV7 248 aa7.56□□□□□ -1.2
CCDC88C-212ENST00000556767 LINC00959A0A1B0GUT2 108 aa7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 USP17L23D6RBM5 183 aa7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 XCL1P47992 114 aa7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 C14orf177Q52M58 125 aa7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 KRTAP26-1Q6PEX3 210 aa7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 Q6ZUT4 128 aa7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 NTN5Q8WTR8 489 aaPredicted RBP7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 SPANXA1Q9NS26 97 aa7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 CSDC2Q9Y534 153 aaKnown RBP7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 FAT2Q9NYQ8 4349 aa7.55□□□□□ -1.2
CCDC88C-212ENST00000556767 TRAV13-1A0A0B4J241 112 aa7.54□□□□□ -1.2
CCDC88C-212ENST00000556767 K7EMI3 77 aa7.54□□□□□ -1.2
CCDC88C-212ENST00000556767 CCL25O15444 150 aa7.54□□□□□ -1.2
CCDC88C-212ENST00000556767 C2orf66Q6UXQ4 117 aa7.54□□□□□ -1.2
CCDC88C-212ENST00000556767 OPRPNQ99935 248 aaPredicted RBP7.54□□□□□ -1.2
CCDC88C-212ENST00000556767 CYSLTR1Q9Y271 337 aa7.54□□□□□ -1.2
CCDC88C-212ENST00000556767 BIRC6Q9NR09 4857 aa7.53□□□□□ -1.2
CCDC88C-212ENST00000556767 FRAS1Q86XX4 4008 aa7.53□□□□□ -1.2
CCDC88C-212ENST00000556767 FA2HQ7L5A8 372 aa7.53□□□□□ -1.2
CCDC88C-212ENST00000556767 YPEL4Q96NS1 127 aa7.53□□□□□ -1.2
CCDC88C-212ENST00000556767 GCSHP23434 173 aa7.52□□□□□ -1.21
CCDC88C-212ENST00000556767 G0S2P27469 103 aa7.52□□□□□ -1.21
CCDC88C-212ENST00000556767 hDV102S1A0JD36 115 aa7.51□□□□□ -1.21
CCDC88C-212ENST00000556767 C1orf196B1AJZ1 125 aa7.51□□□□□ -1.21
CCDC88C-212ENST00000556767 MRPS36P82909 103 aaKnown RBP7.51□□□□□ -1.21
CCDC88C-212ENST00000556767 CFAP161Q6P656 301 aa7.51□□□□□ -1.21
CCDC88C-212ENST00000556767 PYGO1Q9Y3Y4 419 aa7.51□□□□□ -1.21
CCDC88C-212ENST00000556767 IFITM10A6NMD0 228 aa7.5□□□□□ -1.21
CCDC88C-212ENST00000556767 PRSS1P07477 247 aa7.5□□□□□ -1.21
CCDC88C-212ENST00000556767 KRTAP10-1P60331 282 aa7.5□□□□□ -1.21
CCDC88C-212ENST00000556767 FOXI1Q12951 378 aa7.5□□□□□ -1.21
CCDC88C-212ENST00000556767 CD164L2Q6UWJ8 174 aa7.5□□□□□ -1.21
CCDC88C-212ENST00000556767 Q6ZN92 141 aa7.5□□□□□ -1.21
CCDC88C-212ENST00000556767 C18orf32Q8TCD1 76 aa7.5□□□□□ -1.21
CCDC88C-212ENST00000556767 TMEM141Q96I45 108 aa7.5□□□□□ -1.21
CCDC88C-212ENST00000556767 AP5S1Q9NUS5 200 aa7.5□□□□□ -1.21
CCDC88C-212ENST00000556767 IGLV4-3A0A075B6K6 122 aa7.49□□□□□ -1.21
CCDC88C-212ENST00000556767 MALP21145 153 aa7.49□□□□□ -1.21
CCDC88C-212ENST00000556767 LINC01620Q4KN68 170 aa7.49□□□□□ -1.21
CCDC88C-212ENST00000556767 HIGD2BQ4VC39 106 aa7.49□□□□□ -1.21
CCDC88C-212ENST00000556767 TEX43Q6ZNM6 134 aa7.49□□□□□ -1.21
CCDC88C-212ENST00000556767 FAM104AQ969W3 186 aa7.49□□□□□ -1.21
CCDC88C-212ENST00000556767 C2orf88Q9BSF0 95 aa7.49□□□□□ -1.21
CCDC88C-212ENST00000556767 VCX2Q9H322 139 aa7.49□□□□□ -1.21
CCDC88C-212ENST00000556767 LINC00614P0C842 121 aa7.48□□□□□ -1.21
CCDC88C-212ENST00000556767 TOMM6Q96B49 74 aa7.48□□□□□ -1.21
CCDC88C-212ENST00000556767 SCGB3A1Q96QR1 104 aa7.48□□□□□ -1.21
CCDC88C-212ENST00000556767 DNAH11Q96DT5 4516 aa7.48□□□□□ -1.21
CCDC88C-212ENST00000556767 PKD1P98161 4303 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 IGHV1-58A0A0C4DH39 117 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 LINC01546A6NGU7 62 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 IGIPA6NJ69 53 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 COX7A2LO14548 114 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 SCO1O75880 301 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 RAB5BP61020 215 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 ZC2HC1BQ5TFG8 222 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 C5orf38Q86SI9 138 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 C15orf56Q8N910 161 aa7.47□□□□□ -1.21
CCDC88C-212ENST00000556767 TRGC2P03986 189 aa7.46□□□□□ -1.22
CCDC88C-212ENST00000556767 PAPPA-AS1Q5QFB9 102 aa7.46□□□□□ -1.22
CCDC88C-212ENST00000556767 ERASQ7Z444 233 aa7.46□□□□□ -1.22
CCDC88C-212ENST00000556767 TIMM17AQ99595 171 aa7.46□□□□□ -1.22
CCDC88C-212ENST00000556767 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.45□□□□□ -1.22
CCDC88C-212ENST00000556767 LINC01549A6NIU2 74 aa7.45□□□□□ -1.22
CCDC88C-212ENST00000556767 COLCA2A8K830 154 aa7.45□□□□□ -1.22
CCDC88C-212ENST00000556767 CDK2AP2O75956 126 aa7.45□□□□□ -1.22
CCDC88C-212ENST00000556767 NPSP0C0P6 89 aa7.45□□□□□ -1.22
CCDC88C-212ENST00000556767 PMCHL1Q16048 86 aa7.45□□□□□ -1.22
CCDC88C-212ENST00000556767 URB1-AS1Q96HZ7 61 aa7.45□□□□□ -1.22
CCDC88C-212ENST00000556767 HECTD4Q9Y4D8 3996 aa7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 DYNC1H1Q14204 4646 aaKnown RBP7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 GVQW2A0A096LPI5 108 aaPredicted RBP7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 ZNF561-AS1K7EIQ3 104 aa7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 APOMO95445 188 aa7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 HBDP02042 147 aa7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 UBE2D1P51668 147 aa7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 LINC00173Q6ZV60 143 aa7.44□□□□□ -1.22
CCDC88C-212ENST00000556767 BAGE3Q86Y29 109 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms