RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 VCX2Q9H322 139 aa6.33□□□□□ -1.4
SCFD1-220ENST00000556486 IGHV3-64A0A075B6Q5 118 aa6.32□□□□□ -1.4
SCFD1-220ENST00000556486 A0A087WZ39 114 aa6.32□□□□□ -1.4
SCFD1-220ENST00000556486 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.32□□□□□ -1.4
SCFD1-220ENST00000556486 F2Z2F3 143 aa6.32□□□□□ -1.4
SCFD1-220ENST00000556486 TAGLN2P37802 199 aaKnown RBP6.32□□□□□ -1.4
SCFD1-220ENST00000556486 RGS21Q2M5E4 152 aa6.32□□□□□ -1.4
SCFD1-220ENST00000556486 RASL11AQ6T310 242 aa6.32□□□□□ -1.4
SCFD1-220ENST00000556486 FER1L6-AS1Q8NA97 138 aa6.32□□□□□ -1.4
SCFD1-220ENST00000556486 SPACA4Q8TDM5 124 aa6.32□□□□□ -1.4
SCFD1-220ENST00000556486 TMEM243Q9BU79 118 aa6.32□□□□□ -1.4
SCFD1-220ENST00000556486 MANBALQ9NQG1 85 aa6.32□□□□□ -1.4
SCFD1-220ENST00000556486 IGLV4-60A0A075B6I1 120 aa6.31□□□□□ -1.4
SCFD1-220ENST00000556486 IGLV10-54A0A075B6I4 117 aa6.31□□□□□ -1.4
SCFD1-220ENST00000556486 BCL2L11O43521 198 aa6.31□□□□□ -1.4
SCFD1-220ENST00000556486 EIF5AP63241 154 aaKnown RBP6.31□□□□□ -1.4
SCFD1-220ENST00000556486 CENPWQ5EE01 88 aa6.31□□□□□ -1.4
SCFD1-220ENST00000556486 DPH3Q96FX2 82 aa6.31□□□□□ -1.4
SCFD1-220ENST00000556486 CNFNQ9BYD5 112 aa6.31□□□□□ -1.4
SCFD1-220ENST00000556486 GFRA4Q9GZZ7 299 aa6.31□□□□□ -1.4
SCFD1-220ENST00000556486 NIT2Q9NQR4 276 aa6.31□□□□□ -1.4
SCFD1-220ENST00000556486 PLAC8Q9NZF1 115 aa6.31□□□□□ -1.4
SCFD1-220ENST00000556486 A0A087WYN8 130 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 A0A1B0GV50 99 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 XKRY2A2RUG3 117 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 SMLR1H3BR10 107 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 TRGC1P0CF51 173 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 CHTF8P0CG12 524 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 CTRLP40313 264 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 CCL20P78556 96 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 C9orf62Q8N4C0 152 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 OR2D3Q8NGH3 330 aa6.3□□□□□ -1.4
SCFD1-220ENST00000556486 TRBV20OR9-2A0A075B6H5 130 aa6.29□□□□□ -1.4
SCFD1-220ENST00000556486 KANTRA0A1W2PQU2 76 aa6.29□□□□□ -1.4
SCFD1-220ENST00000556486 PHOX2AO14813 284 aa6.29□□□□□ -1.4
SCFD1-220ENST00000556486 MGPP08493 103 aa6.29□□□□□ -1.4
SCFD1-220ENST00000556486 RAB5CP51148 216 aa6.29□□□□□ -1.4
SCFD1-220ENST00000556486 NKX2-5P52952 324 aaPredicted RBP6.29□□□□□ -1.4
SCFD1-220ENST00000556486 C15orf56Q8N910 161 aa6.29□□□□□ -1.4
SCFD1-220ENST00000556486 GNG13Q9P2W3 67 aa6.29□□□□□ -1.4
SCFD1-220ENST00000556486 PDE6DO43924 150 aa6.28□□□□□ -1.4
SCFD1-220ENST00000556486 GNG4P50150 75 aa6.28□□□□□ -1.4
SCFD1-220ENST00000556486 MEF2BQ02080 365 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-220ENST00000556486 COTL1Q14019 142 aa6.28□□□□□ -1.4
SCFD1-220ENST00000556486 LINC01600Q96MT4 127 aa6.28□□□□□ -1.4
SCFD1-220ENST00000556486 BIN3Q9NQY0 253 aa6.28□□□□□ -1.4
SCFD1-220ENST00000556486 H7C423 109 aa6.27□□□□□ -1.41
SCFD1-220ENST00000556486 IFNA1P01562 189 aa6.27□□□□□ -1.41
SCFD1-220ENST00000556486 NTF3P20783 257 aa6.27□□□□□ -1.41
SCFD1-220ENST00000556486 LYZL1Q6UWQ5 148 aa6.27□□□□□ -1.41
SCFD1-220ENST00000556486 Q6ZVQ6 151 aa6.27□□□□□ -1.41
SCFD1-220ENST00000556486 MUC2Q02817 5179 aa6.27□□□□□ -1.41
SCFD1-220ENST00000556486 GVQW2A0A096LPI5 108 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-220ENST00000556486 RAB19A4D1S5 217 aa6.26□□□□□ -1.41
SCFD1-220ENST00000556486 TEX46H3BTG2 121 aa6.26□□□□□ -1.41
SCFD1-220ENST00000556486 UBE2L6O14933 153 aa6.26□□□□□ -1.41
SCFD1-220ENST00000556486 NCR2O95944 276 aa6.26□□□□□ -1.41
SCFD1-220ENST00000556486 RPS10P46783 165 aaKnown RBP6.26□□□□□ -1.41
SCFD1-220ENST00000556486 SULT1A2P50226 295 aa6.26□□□□□ -1.41
SCFD1-220ENST00000556486 EIF5AL1Q6IS14 154 aaKnown RBP6.26□□□□□ -1.41
SCFD1-220ENST00000556486 NDUFS6O75380 124 aaKnown RBP6.25□□□□□ -1.41
SCFD1-220ENST00000556486 COX6A2Q02221 97 aa6.25□□□□□ -1.41
SCFD1-220ENST00000556486 LINC00518Q8N0U6 118 aa6.25□□□□□ -1.41
SCFD1-220ENST00000556486 GATD1Q8NB37 220 aa6.25□□□□□ -1.41
SCFD1-220ENST00000556486 C7orf33Q8WU49 177 aa6.25□□□□□ -1.41
SCFD1-220ENST00000556486 C2orf48Q96LS8 159 aa6.25□□□□□ -1.41
SCFD1-220ENST00000556486 FAM210AQ96ND0 272 aa6.25□□□□□ -1.41
SCFD1-220ENST00000556486 A0A0J9YXV3 536 aa6.24□□□□□ -1.41
SCFD1-220ENST00000556486 BCL2P10415 239 aa6.24□□□□□ -1.41
SCFD1-220ENST00000556486 ZNF25P17030 456 aaPredicted RBP6.24□□□□□ -1.41
SCFD1-220ENST00000556486 PRR3P79522 188 aaKnown RBP6.24□□□□□ -1.41
SCFD1-220ENST00000556486 TEX261Q6UWH6 196 aa6.24□□□□□ -1.41
SCFD1-220ENST00000556486 GTSF1Q8WW33 167 aa6.24□□□□□ -1.41
SCFD1-220ENST00000556486 H0Y8G0 127 aa6.23□□□□□ -1.41
SCFD1-220ENST00000556486 KRTAP10-8P60410 259 aa6.23□□□□□ -1.41
SCFD1-220ENST00000556486 LYPD6BQ8NI32 183 aa6.23□□□□□ -1.41
SCFD1-220ENST00000556486 CHCHD10Q8WYQ3 142 aaPredicted RBP6.23□□□□□ -1.41
SCFD1-220ENST00000556486 RPP21Q9H633 154 aaKnown RBP6.23□□□□□ -1.41
SCFD1-220ENST00000556486 MED9Q9NWA0 146 aa6.23□□□□□ -1.41
SCFD1-220ENST00000556486 LINC00474Q9P2X8 69 aa6.23□□□□□ -1.41
SCFD1-220ENST00000556486 PKIGQ9Y2B9 76 aa6.23□□□□□ -1.41
SCFD1-220ENST00000556486 TRBV6-5A0A0K0K1A5 114 aa6.22□□□□□ -1.41
SCFD1-220ENST00000556486 FGF6P10767 208 aa6.22□□□□□ -1.41
SCFD1-220ENST00000556486 FAT4Q6V0I7 4981 aa6.21□□□□□ -1.41
SCFD1-220ENST00000556486 TRAV26-2A0A0B4J265 109 aa6.21□□□□□ -1.42
SCFD1-220ENST00000556486 SDHAF1A6NFY7 115 aa6.21□□□□□ -1.42
SCFD1-220ENST00000556486 K7EN84 100 aa6.21□□□□□ -1.42
SCFD1-220ENST00000556486 APCSP02743 223 aa6.21□□□□□ -1.42
SCFD1-220ENST00000556486 ESDP10768 282 aa6.21□□□□□ -1.42
SCFD1-220ENST00000556486 FOXA3P55318 350 aaPredicted RBP6.21□□□□□ -1.42
SCFD1-220ENST00000556486 HIGD2BQ4VC39 106 aa6.21□□□□□ -1.42
SCFD1-220ENST00000556486 AMMECR1LQ6DCA0 310 aa6.21□□□□□ -1.42
SCFD1-220ENST00000556486 STPG4Q8N801 248 aa6.21□□□□□ -1.42
SCFD1-220ENST00000556486 OR5A1Q8NGJ0 315 aa6.21□□□□□ -1.42
SCFD1-220ENST00000556486 RPL39LQ96EH5 51 aaKnown RBP6.21□□□□□ -1.42
SCFD1-220ENST00000556486 A0A096LNI7 61 aa6.2□□□□□ -1.42
SCFD1-220ENST00000556486 IGKV2-24A0A0C4DH68 120 aa6.2□□□□□ -1.42
SCFD1-220ENST00000556486 FAM231BA6NCW3 169 aa6.2□□□□□ -1.42
SCFD1-220ENST00000556486 RIGQ13278 110 aa6.2□□□□□ -1.42
SCFD1-220ENST00000556486 KIAA1644Q3SXP7 199 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms