RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LEPROTO15243 131 aa10.95□□□□□ -0.66
CUX1-215ENST00000556210 IFITM1P13164 125 aa10.94□□□□□ -0.66
CUX1-215ENST00000556210 Q6ZSV7 163 aa10.94□□□□□ -0.66
CUX1-215ENST00000556210 TRBV7-9A0A0J9YWB2 115 aa10.94□□□□□ -0.66
CUX1-215ENST00000556210 PSMG3-AS1Q96PY0 264 aa10.94□□□□□ -0.66
CUX1-215ENST00000556210 Q9H8V8 135 aa10.94□□□□□ -0.66
CUX1-215ENST00000556210 POLR2KP53803 58 aaKnown RBP10.93□□□□□ -0.66
CUX1-215ENST00000556210 SMR3AQ99954 134 aa10.93□□□□□ -0.66
CUX1-215ENST00000556210 GCN1Q92616 2671 aaKnown RBP10.93□□□□□ -0.66
CUX1-215ENST00000556210 RHODO00212 210 aa10.93□□□□□ -0.66
CUX1-215ENST00000556210 IGHV3-30-3P0DP02 117 aa10.93□□□□□ -0.66
CUX1-215ENST00000556210 UBE2D1P51668 147 aa10.93□□□□□ -0.66
CUX1-215ENST00000556210 RHOHQ15669 191 aa10.93□□□□□ -0.66
CUX1-215ENST00000556210 LINC00467Q9BRT7 94 aa10.93□□□□□ -0.66
CUX1-215ENST00000556210 NDUFA7O95182 113 aa10.92□□□□□ -0.66
CUX1-215ENST00000556210 DEFB114Q30KQ6 69 aa10.92□□□□□ -0.66
CUX1-215ENST00000556210 C5orf38Q86SI9 138 aa10.92□□□□□ -0.66
CUX1-215ENST00000556210 CARD19Q96LW7 228 aa10.92□□□□□ -0.66
CUX1-215ENST00000556210 IGHV3-30P01768 117 aa10.92□□□□□ -0.66
CUX1-215ENST00000556210 IGHV3-30-5P0DP03 117 aa10.92□□□□□ -0.66
CUX1-215ENST00000556210 MED14OSP0DP75 135 aa10.91□□□□□ -0.66
CUX1-215ENST00000556210 IGLV4-3A0A075B6K6 122 aa10.91□□□□□ -0.66
CUX1-215ENST00000556210 NXPH4O95158 308 aa10.91□□□□□ -0.66
CUX1-215ENST00000556210 PRO0461Q9UI25 63 aa10.91□□□□□ -0.66
CUX1-215ENST00000556210 TEX49A0A1B0GTD5 131 aa10.91□□□□□ -0.66
CUX1-215ENST00000556210 PLA2G2AP14555 144 aa10.91□□□□□ -0.66
CUX1-215ENST00000556210 LINC01546A6NGU7 62 aa10.9□□□□□ -0.66
CUX1-215ENST00000556210 PAX4O43316 350 aa10.9□□□□□ -0.66
CUX1-215ENST00000556210 TSPEAR-AS2P59090 65 aa10.9□□□□□ -0.66
CUX1-215ENST00000556210 CDKN2A-AS1Q9UH64 79 aa10.9□□□□□ -0.66
CUX1-215ENST00000556210 SMCPP49901 116 aaPredicted RBP10.9□□□□□ -0.67
CUX1-215ENST00000556210 HERV-K104P63124 156 aa10.9□□□□□ -0.67
CUX1-215ENST00000556210 UBR5O95071 2799 aaPredicted RBP10.89□□□□□ -0.67
CUX1-215ENST00000556210 TSHBP01222 138 aa10.89□□□□□ -0.67
CUX1-215ENST00000556210 IGHV3-33P01772 117 aa10.89□□□□□ -0.67
CUX1-215ENST00000556210 ZNF22P17026 224 aaPredicted RBP10.89□□□□□ -0.67
CUX1-215ENST00000556210 CRIP2P52943 208 aaPredicted RBP10.89□□□□□ -0.67
CUX1-215ENST00000556210 C6orf226Q5I0X4 101 aa10.89□□□□□ -0.67
CUX1-215ENST00000556210 TRBV27A0A0K0K1C4 114 aa10.89□□□□□ -0.67
CUX1-215ENST00000556210 CLEC2BQ92478 149 aa10.89□□□□□ -0.67
CUX1-215ENST00000556210 CDIP1Q9H305 208 aa10.89□□□□□ -0.67
CUX1-215ENST00000556210 IGLV10-54A0A075B6I4 117 aa10.88□□□□□ -0.67
CUX1-215ENST00000556210 LGALS9O00182 355 aa10.88□□□□□ -0.67
CUX1-215ENST00000556210 Q6ZSN1 163 aa10.88□□□□□ -0.67
CUX1-215ENST00000556210 IGIPA6NJ69 53 aa10.88□□□□□ -0.67
CUX1-215ENST00000556210 DNAL4O96015 105 aa10.88□□□□□ -0.67
CUX1-215ENST00000556210 F8P00451 2351 aa10.88□□□□□ -0.67
CUX1-215ENST00000556210 IGLV4-69A0A075B6H9 119 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 RBMY1A1P0DJD3 496 aaKnown RBP10.87□□□□□ -0.67
CUX1-215ENST00000556210 RBMY1CP0DJD4 496 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 UBE2D3P61077 147 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 UBE2D2P62837 147 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 RBMY1FQ15415 496 aaKnown RBP10.87□□□□□ -0.67
CUX1-215ENST00000556210 XCL1P47992 114 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 C4orf3Q8WVX3 66 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 TMEM243Q9BU79 118 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 ICOSQ9Y6W8 199 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 ITPR2Q14571 2701 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 LOC100131303A0A0U1RQF7 123 aa10.87□□□□□ -0.67
CUX1-215ENST00000556210 A0A0J9YXY3 114 aa10.86□□□□□ -0.67
CUX1-215ENST00000556210 ZNF575Q86XF7 245 aa10.86□□□□□ -0.67
CUX1-215ENST00000556210 C9orf85Q96MD7 179 aa10.86□□□□□ -0.67
CUX1-215ENST00000556210 TRBV10-2A0A0K0K1G8 114 aa10.86□□□□□ -0.67
CUX1-215ENST00000556210 J3QKU1 62 aa10.86□□□□□ -0.67
CUX1-215ENST00000556210 CRLF1O75462 422 aa10.85□□□□□ -0.67
CUX1-215ENST00000556210 TRAV4A0A0B4J268 109 aa10.85□□□□□ -0.67
CUX1-215ENST00000556210 COPS9Q8WXC6 57 aa10.85□□□□□ -0.67
CUX1-215ENST00000556210 TMEM223A0PJW6 202 aa10.84□□□□□ -0.67
CUX1-215ENST00000556210 MALP21145 153 aa10.84□□□□□ -0.67
CUX1-215ENST00000556210 TRIAP1O43715 76 aa10.84□□□□□ -0.67
CUX1-215ENST00000556210 NDUFV3P56181 108 aaKnown RBP10.84□□□□□ -0.67
CUX1-215ENST00000556210 LINC00315P59091 139 aa10.84□□□□□ -0.67
CUX1-215ENST00000556210 SVIPQ8NHG7 77 aa10.84□□□□□ -0.67
CUX1-215ENST00000556210 CFAP161Q6P656 301 aa10.83□□□□□ -0.68
CUX1-215ENST00000556210 KIF25-AS1Q9Y6Z4 181 aa10.83□□□□□ -0.68
CUX1-215ENST00000556210 A0A0B4J2C4 111 aa10.83□□□□□ -0.68
CUX1-215ENST00000556210 RBMY1BA6NDE4 496 aaKnown RBP10.83□□□□□ -0.68
CUX1-215ENST00000556210 RBMY1EA6NEQ0 496 aaKnown RBP10.83□□□□□ -0.68
CUX1-215ENST00000556210 RBMY1DP0C7P1 496 aaKnown RBP10.83□□□□□ -0.68
CUX1-215ENST00000556210 F5H768 121 aa10.83□□□□□ -0.68
CUX1-215ENST00000556210 RS1O15537 224 aa10.83□□□□□ -0.68
CUX1-215ENST00000556210 ODF3L2Q3SX64 289 aa10.83□□□□□ -0.68
CUX1-215ENST00000556210 LINC00482Q8N8I6 264 aa10.83□□□□□ -0.68
CUX1-215ENST00000556210 MGAM2Q2M2H8 2515 aa10.82□□□□□ -0.68
CUX1-215ENST00000556210 K7EQD1 137 aa10.82□□□□□ -0.68
CUX1-215ENST00000556210 TMEM89A2RUT3 159 aa10.81□□□□□ -0.68
CUX1-215ENST00000556210 DEFB135Q30KP9 77 aa10.81□□□□□ -0.68
CUX1-215ENST00000556210 LINC01006Q8NI28 216 aa10.81□□□□□ -0.68
CUX1-215ENST00000556210 SPANXA1Q9NS26 97 aa10.81□□□□□ -0.68
CUX1-215ENST00000556210 GAGE2AQ6NT46 116 aa10.81□□□□□ -0.68
CUX1-215ENST00000556210 IGHV1-58A0A0C4DH39 117 aa10.8□□□□□ -0.68
CUX1-215ENST00000556210 VSIG2Q96IQ7 327 aa10.8□□□□□ -0.68
CUX1-215ENST00000556210 CRPP02741 224 aa10.8□□□□□ -0.68
CUX1-215ENST00000556210 GYPEP15421 78 aa10.8□□□□□ -0.68
CUX1-215ENST00000556210 TMEM263Q8WUH6 116 aaKnown RBP10.8□□□□□ -0.68
CUX1-215ENST00000556210 SETXQ7Z333 2677 aaKnown RBP10.8□□□□□ -0.68
CUX1-215ENST00000556210 MAST4O15021 2626 aa10.79□□□□□ -0.68
CUX1-215ENST00000556210 HERVK_113P63121 156 aa10.79□□□□□ -0.68
CUX1-215ENST00000556210 TRBV6-5A0A0K0K1A5 114 aa10.78□□□□□ -0.68
CUX1-215ENST00000556210 MRPL23Q16540 153 aaKnown RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms