RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 TCL1BO95988 128 aa7.96□□□□□ -1.14
ACTN1-216ENST00000556083 RBX1P62877 108 aa7.96□□□□□ -1.14
ACTN1-216ENST00000556083 SPTSSBQ8NFR3 76 aa7.96□□□□□ -1.14
ACTN1-216ENST00000556083 TRAV23DV6A0A075B6W5 121 aa7.96□□□□□ -1.14
ACTN1-216ENST00000556083 IGKV4-1P06312 121 aa7.95□□□□□ -1.14
ACTN1-216ENST00000556083 ASPHD1Q5U4P2 390 aa7.95□□□□□ -1.14
ACTN1-216ENST00000556083 POLR2KP53803 58 aaKnown RBP7.95□□□□□ -1.14
ACTN1-216ENST00000556083 PTH2Q96A98 100 aa7.95□□□□□ -1.14
ACTN1-216ENST00000556083 NAV3Q8IVL0 2385 aa7.94□□□□□ -1.14
ACTN1-216ENST00000556083 NUPR2A6NF83 97 aa7.94□□□□□ -1.14
ACTN1-216ENST00000556083 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.94□□□□□ -1.14
ACTN1-216ENST00000556083 IGKV2-24A0A0C4DH68 120 aa7.94□□□□□ -1.14
ACTN1-216ENST00000556083 CACNA1AO00555 2505 aa7.94□□□□□ -1.14
ACTN1-216ENST00000556083 DEFB4AO15263 64 aa7.94□□□□□ -1.14
ACTN1-216ENST00000556083 INAFM1C9JVW0 142 aa7.93□□□□□ -1.14
ACTN1-216ENST00000556083 ZNF295-AS1Q8N0V1 137 aa7.93□□□□□ -1.14
ACTN1-216ENST00000556083 TNCP24821 2201 aa7.93□□□□□ -1.14
ACTN1-216ENST00000556083 LINC01561Q8N1V8 128 aa7.93□□□□□ -1.14
ACTN1-216ENST00000556083 NOTCH2Q04721 2471 aa7.93□□□□□ -1.14
ACTN1-216ENST00000556083 CRIP3Q6Q6R5 217 aa7.93□□□□□ -1.14
ACTN1-216ENST00000556083 C20orf173Q96LM9 149 aa7.93□□□□□ -1.14
ACTN1-216ENST00000556083 COL4A3Q01955 1670 aa7.93□□□□□ -1.14
ACTN1-216ENST00000556083 RNF185Q96GF1 192 aa7.93□□□□□ -1.14
ACTN1-216ENST00000556083 EGFEM1PQ0D2K5 195 aa7.92□□□□□ -1.14
ACTN1-216ENST00000556083 ADAMTS9Q9P2N4 1935 aa7.92□□□□□ -1.14
ACTN1-216ENST00000556083 KPRPQ5T749 579 aaPredicted RBP7.92□□□□□ -1.14
ACTN1-216ENST00000556083 TP53TG3Q9ULZ0 132 aa7.92□□□□□ -1.14
ACTN1-216ENST00000556083 LY6G6DO95868 133 aa7.92□□□□□ -1.14
ACTN1-216ENST00000556083 CEP350Q5VT06 3117 aa7.92□□□□□ -1.14
ACTN1-216ENST00000556083 IGKV2D-26A0A0A0MRZ7 120 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 CSDC2Q9Y534 153 aaKnown RBP7.91□□□□□ -1.14
ACTN1-216ENST00000556083 TTTY13Q9BZ97 58 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 C16orf95Q9H693 158 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 COX8CQ7Z4L0 72 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 C2orf16Q68DN1 1984 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 LINC00959A0A1B0GUT2 108 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 TSHBP01222 138 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 UBE2D3P61077 147 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 UBE2D2P62837 147 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 OBSL1O75147 1896 aa7.91□□□□□ -1.14
ACTN1-216ENST00000556083 IGLV2-11P01706 119 aa7.9□□□□□ -1.14
ACTN1-216ENST00000556083 NCOA6Q14686 2063 aaPredicted RBP7.9□□□□□ -1.14
ACTN1-216ENST00000556083 SPG11Q96JI7 2443 aa7.9□□□□□ -1.14
ACTN1-216ENST00000556083 RNASE3P12724 160 aaKnown RBP7.9□□□□□ -1.14
ACTN1-216ENST00000556083 UBE2D1P51668 147 aa7.9□□□□□ -1.14
ACTN1-216ENST00000556083 KIF26AQ9ULI4 1882 aaPredicted RBP7.9□□□□□ -1.14
ACTN1-216ENST00000556083 C6orf99Q4VX62 202 aa7.9□□□□□ -1.15
ACTN1-216ENST00000556083 CEMP1Q6PRD7 247 aaPredicted RBP7.9□□□□□ -1.15
ACTN1-216ENST00000556083 DCANP1Q8TF63 244 aa7.9□□□□□ -1.15
ACTN1-216ENST00000556083 UBE2D4Q9Y2X8 147 aa7.9□□□□□ -1.15
ACTN1-216ENST00000556083 DEFB1P60022 68 aa7.9□□□□□ -1.15
ACTN1-216ENST00000556083 Q6ZPA2 131 aa7.9□□□□□ -1.15
ACTN1-216ENST00000556083 NRACQ8N912 160 aa7.9□□□□□ -1.15
ACTN1-216ENST00000556083 GDF5OSQ5U4N7 250 aa7.89□□□□□ -1.15
ACTN1-216ENST00000556083 LST1O00453 97 aa7.89□□□□□ -1.15
ACTN1-216ENST00000556083 CCKP06307 115 aa7.89□□□□□ -1.15
ACTN1-216ENST00000556083 FAM236DA0A1B0GTK5 79 aa7.89□□□□□ -1.15
ACTN1-216ENST00000556083 FAM240AA0A1B0GVK7 77 aa7.89□□□□□ -1.15
ACTN1-216ENST00000556083 FAM236CP0DP71 79 aa7.89□□□□□ -1.15
ACTN1-216ENST00000556083 CRIP1P50238 77 aa7.89□□□□□ -1.15
ACTN1-216ENST00000556083 Q6JHZ5 121 aa7.88□□□□□ -1.15
ACTN1-216ENST00000556083 FAM19A3Q7Z5A8 133 aa7.88□□□□□ -1.15
ACTN1-216ENST00000556083 RPL28P46779 137 aaKnown RBP7.88□□□□□ -1.15
ACTN1-216ENST00000556083 NDUFV3P56181 108 aaKnown RBP7.88□□□□□ -1.15
ACTN1-216ENST00000556083 LINC00482Q8N8I6 264 aa7.88□□□□□ -1.15
ACTN1-216ENST00000556083 BBC3Q96PG8 261 aaPredicted RBP7.88□□□□□ -1.15
ACTN1-216ENST00000556083 DSCAMO60469 2012 aa7.87□□□□□ -1.15
ACTN1-216ENST00000556083 NDUFC2-KCTD14E9PQ53 114 aa7.87□□□□□ -1.15
ACTN1-216ENST00000556083 TRIAP1O43715 76 aa7.87□□□□□ -1.15
ACTN1-216ENST00000556083 SERP2Q8N6R1 65 aa7.87□□□□□ -1.15
ACTN1-216ENST00000556083 IGLV1-51P01701 117 aa7.86□□□□□ -1.15
ACTN1-216ENST00000556083 CDC42SE2Q9NRR3 84 aa7.86□□□□□ -1.15
ACTN1-216ENST00000556083 ALPK3Q96L96 1907 aa7.86□□□□□ -1.15
ACTN1-216ENST00000556083 ZNF73O43830 326 aaPredicted RBP7.86□□□□□ -1.15
ACTN1-216ENST00000556083 C1orf229Q6ZS94 237 aaPredicted RBP7.86□□□□□ -1.15
ACTN1-216ENST00000556083 C3orf22Q8N5N4 141 aa7.86□□□□□ -1.15
ACTN1-216ENST00000556083 WNK1Q9H4A3 2382 aa7.86□□□□□ -1.15
ACTN1-216ENST00000556083 FREM1Q5H8C1 2179 aa7.86□□□□□ -1.15
ACTN1-216ENST00000556083 NUP210LQ5VU65 1888 aa7.86□□□□□ -1.15
ACTN1-216ENST00000556083 WISP2O76076 250 aa7.85□□□□□ -1.15
ACTN1-216ENST00000556083 Q8N9L7 120 aa7.85□□□□□ -1.15
ACTN1-216ENST00000556083 NCOR2Q9Y618 2525 aa7.85□□□□□ -1.15
ACTN1-216ENST00000556083 OTOGLQ3ZCN5 2332 aa7.85□□□□□ -1.15
ACTN1-216ENST00000556083 Q6Q795 121 aa7.85□□□□□ -1.15
ACTN1-216ENST00000556083 YPEL4Q96NS1 127 aa7.85□□□□□ -1.15
ACTN1-216ENST00000556083 CSPG4Q6UVK1 2322 aa7.84□□□□□ -1.15
ACTN1-216ENST00000556083 FAM19A5Q7Z5A7 132 aaPredicted RBP7.84□□□□□ -1.15
ACTN1-216ENST00000556083 C2orf48Q96LS8 159 aa7.84□□□□□ -1.15
ACTN1-216ENST00000556083 COL4A4P53420 1690 aaPredicted RBP7.84□□□□□ -1.15
ACTN1-216ENST00000556083 NHLRC4P0CG21 123 aaPredicted RBP7.84□□□□□ -1.15
ACTN1-216ENST00000556083 PLA2G2AP14555 144 aa7.84□□□□□ -1.15
ACTN1-216ENST00000556083 C22orf34Q6ZV56 151 aa7.84□□□□□ -1.15
ACTN1-216ENST00000556083 C20orf197Q8N268 126 aa7.84□□□□□ -1.15
ACTN1-216ENST00000556083 SERP1Q9Y6X1 66 aa7.84□□□□□ -1.15
ACTN1-216ENST00000556083 NAV2Q8IVL1 2488 aa7.84□□□□□ -1.15
ACTN1-216ENST00000556083 Q6ZQY7 126 aa7.84□□□□□ -1.15
ACTN1-216ENST00000556083 FRMD6-AS1P0C7T7 363 aa7.84□□□□□ -1.16
ACTN1-216ENST00000556083 SONP18583 2426 aaKnown RBP7.83□□□□□ -1.16
ACTN1-216ENST00000556083 RNASE8Q8TDE3 154 aaKnown RBP7.83□□□□□ -1.16
ACTN1-216ENST00000556083 XAGE1AQ9HD64 81 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 155.3 ms