RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 COX6CP09669 75 aa9.68□□□□□ -0.86
SHMT2-222ENST00000555774 CIRBPQ14011 172 aaKnown RBP9.68□□□□□ -0.86
SHMT2-222ENST00000555774 TMEM101Q96IK0 257 aa9.68□□□□□ -0.86
SHMT2-222ENST00000555774 ICOSQ9Y6W8 199 aa9.68□□□□□ -0.86
SHMT2-222ENST00000555774 TRBV10-2A0A0K0K1G8 114 aa9.67□□□□□ -0.86
SHMT2-222ENST00000555774 A8MZ25 164 aa9.67□□□□□ -0.86
SHMT2-222ENST00000555774 CIDEAO60543 219 aa9.67□□□□□ -0.86
SHMT2-222ENST00000555774 COPS9Q8WXC6 57 aa9.67□□□□□ -0.86
SHMT2-222ENST00000555774 USP9YO00507 2555 aaPredicted RBP9.67□□□□□ -0.86
SHMT2-222ENST00000555774 LINC00242Q5T6M2 205 aa9.66□□□□□ -0.86
SHMT2-222ENST00000555774 FAM110AQ9BQ89 295 aa9.66□□□□□ -0.86
SHMT2-222ENST00000555774 ACACBO00763 2458 aa9.66□□□□□ -0.86
SHMT2-222ENST00000555774 SORL1Q92673 2214 aa9.65□□□□□ -0.86
SHMT2-222ENST00000555774 MYO18BQ8IUG5 2567 aa9.65□□□□□ -0.86
SHMT2-222ENST00000555774 A0A1B0GV72 72 aa9.65□□□□□ -0.87
SHMT2-222ENST00000555774 RPL13AP40429 203 aaKnown RBP9.65□□□□□ -0.87
SHMT2-222ENST00000555774 Q6ZTI0 123 aa9.65□□□□□ -0.87
SHMT2-222ENST00000555774 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.65□□□□□ -0.87
SHMT2-222ENST00000555774 C16orf74Q96GX8 76 aa9.65□□□□□ -0.87
SHMT2-222ENST00000555774 C16orf95Q9H693 158 aa9.65□□□□□ -0.87
SHMT2-222ENST00000555774 A0A1W2PRX2 142 aa9.64□□□□□ -0.87
SHMT2-222ENST00000555774 COX6A2Q02221 97 aa9.64□□□□□ -0.87
SHMT2-222ENST00000555774 UBR5O95071 2799 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-222ENST00000555774 LINC00694P0DN24 101 aa9.64□□□□□ -0.87
SHMT2-222ENST00000555774 HIST2H2BDQ6DRA6 164 aa9.64□□□□□ -0.87
SHMT2-222ENST00000555774 NTM-AS1Q6ZSK4 140 aa9.64□□□□□ -0.87
SHMT2-222ENST00000555774 PPDPFQ9H3Y8 114 aa9.64□□□□□ -0.87
SHMT2-222ENST00000555774 ESM1Q9NQ30 184 aa9.64□□□□□ -0.87
SHMT2-222ENST00000555774 SMIM1B2RUZ4 78 aa9.63□□□□□ -0.87
SHMT2-222ENST00000555774 H3BT86 120 aa9.63□□□□□ -0.87
SHMT2-222ENST00000555774 H7C423 109 aa9.63□□□□□ -0.87
SHMT2-222ENST00000555774 WFDC11Q8NEX6 87 aa9.63□□□□□ -0.87
SHMT2-222ENST00000555774 CITED2Q99967 270 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-222ENST00000555774 CDC42SE2Q9NRR3 84 aa9.63□□□□□ -0.87
SHMT2-222ENST00000555774 CREBBPQ92793 2442 aa9.63□□□□□ -0.87
SHMT2-222ENST00000555774 XGP55808 180 aa9.62□□□□□ -0.87
SHMT2-222ENST00000555774 Q9H8V8 135 aa9.62□□□□□ -0.87
SHMT2-222ENST00000555774 HERV-K104P63124 156 aa9.62□□□□□ -0.87
SHMT2-222ENST00000555774 C11orf44Q8N8P7 122 aa9.62□□□□□ -0.87
SHMT2-222ENST00000555774 GAGE12JA6NER3 117 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 LST1O00453 97 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 MT-ATP8P03928 68 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 RNASE1P07998 156 aaKnown RBP9.61□□□□□ -0.87
SHMT2-222ENST00000555774 NPC2P61916 151 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 GAGE4Q13068 117 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 GAGE5Q13069 117 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 LINC00308Q8TCZ7 52 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 NTN5Q8WTR8 489 aaPredicted RBP9.61□□□□□ -0.87
SHMT2-222ENST00000555774 TMEM243Q9BU79 118 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 NOP10Q9NPE3 64 aaKnown RBP9.61□□□□□ -0.87
SHMT2-222ENST00000555774 ZNF462Q96JM2 2506 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 TRBV6-4A0A1B0GX49 114 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 GIG44P09565 113 aaPredicted RBP9.61□□□□□ -0.87
SHMT2-222ENST00000555774 CSMD2Q7Z408 3487 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 NAV2Q8IVL1 2488 aa9.61□□□□□ -0.87
SHMT2-222ENST00000555774 UTP20O75691 2785 aaKnown RBP9.6□□□□□ -0.87
SHMT2-222ENST00000555774 UBE2L6O14933 153 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 OVOL2Q9BRP0 275 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 POLQO75417 2590 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 CRYBG3Q68DQ2 2970 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 MAP1AP78559 2803 aaPredicted RBP9.6□□□□□ -0.87
SHMT2-222ENST00000555774 PLAC8L1A1L4L8 177 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 F5H768 121 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 IGLV1-51P01701 117 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 C2orf82Q6UX34 121 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 LINC01006Q8NI28 216 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 UBE2WQ96B02 151 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 ZNF625Q96I27 306 aaPredicted RBP9.6□□□□□ -0.87
SHMT2-222ENST00000555774 ZANQ9Y493 2812 aa9.6□□□□□ -0.87
SHMT2-222ENST00000555774 TRAV13-1A0A0B4J241 112 aa9.59□□□□□ -0.87
SHMT2-222ENST00000555774 SVIPQ8NHG7 77 aa9.59□□□□□ -0.87
SHMT2-222ENST00000555774 FAM208BQ5VWN6 2430 aa9.59□□□□□ -0.87
SHMT2-222ENST00000555774 MXRA5Q9NR99 2828 aa9.59□□□□□ -0.87
SHMT2-222ENST00000555774 CKS1BP61024 79 aa9.58□□□□□ -0.88
SHMT2-222ENST00000555774 DAND5Q8N907 189 aa9.58□□□□□ -0.88
SHMT2-222ENST00000555774 C19orf73Q9NVV2 129 aa9.58□□□□□ -0.88
SHMT2-222ENST00000555774 TRGV2A0A075B6R0 118 aa9.57□□□□□ -0.88
SHMT2-222ENST00000555774 PRIMA1Q86XR5 153 aa9.57□□□□□ -0.88
SHMT2-222ENST00000555774 PTPN13Q12923 2485 aa9.57□□□□□ -0.88
SHMT2-222ENST00000555774 USP24Q9UPU5 2620 aa9.57□□□□□ -0.88
SHMT2-222ENST00000555774 NDUFA7O95182 113 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 MEIG1Q5JSS6 88 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 CSNK1G2-AS1Q8NCQ2 148 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 LRRK2Q5S007 2527 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 TRAV8-4A0A0B4J246 113 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 GAGE7O76087 117 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 GAGE12FP0CL80 117 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 GAGE12GP0CL81 117 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 GAGE12IP0CL82 117 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 KRTAP1-1Q07627 177 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 CLEC2BQ92478 149 aa9.56□□□□□ -0.88
SHMT2-222ENST00000555774 TEX49A0A1B0GTD5 131 aa9.55□□□□□ -0.88
SHMT2-222ENST00000555774 COX7A2LO14548 114 aa9.55□□□□□ -0.88
SHMT2-222ENST00000555774 RPL35AP18077 110 aaKnown RBP9.55□□□□□ -0.88
SHMT2-222ENST00000555774 DEFB121Q5J5C9 76 aa9.55□□□□□ -0.88
SHMT2-222ENST00000555774 TRGV4A0A0C4DH28 118 aa9.54□□□□□ -0.88
SHMT2-222ENST00000555774 SHISA2Q6UWI4 295 aa9.54□□□□□ -0.88
SHMT2-222ENST00000555774 SOSTDC1Q6X4U4 206 aa9.54□□□□□ -0.88
SHMT2-222ENST00000555774 CITED1Q99966 193 aa9.54□□□□□ -0.88
SHMT2-222ENST00000555774 AKAP9Q99996 3911 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms