RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 MYCBP2O75592 4640 aa-0.09□□□□□ -2.42
SCFD1-216ENST00000555550 TLN1Q9Y490 2541 aaKnown RBP-0.1□□□□□ -2.42
SCFD1-216ENST00000555550 MYOM1P52179 1685 aa-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 COL4A6Q14031 1691 aa-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 LINC00587B1AMM8 73 aa-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 DLEU1O43261 78 aa-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 APOC1P02654 83 aa-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 FGF7P21781 194 aa-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 CCDC58Q4VC31 144 aa-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 KCNRGQ8N5I3 272 aa-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 C1orf54Q8WWF1 131 aa-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 ROCK2O75116 1388 aaKnown RBP-0.1□□□□□ -2.43
SCFD1-216ENST00000555550 UNC80Q8N2C7 3258 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 SRRM2Q9UQ35 2752 aaKnown RBP-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 MYH7P12883 1935 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 CEP295Q9C0D2 2601 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 CPSF1Q10570 1443 aaKnown RBP-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 KDM3BQ7LBC6 1761 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 BIVM-ERCC5R4GMW8 1640 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 EFCAB10A6NFE3 127 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 OOSP1A8MZH6 123 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 I3L2K1 104 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 APOC4-APOC2K7ER74 178 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 ACYP2P14621 99 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 RBM3P98179 157 aaKnown RBP-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 S100A7L2Q5SY68 101 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 SPTSSBQ8NFR3 76 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 PPP1R1CQ8WVI7 109 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 PRR15LQ9BU68 103 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 SPANXDQ9BXN6 97 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 FAM107BQ9H098 131 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 ZFHX4Q86UP3 3567 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 LAMA1P25391 3075 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 CACNA1CQ13936 2221 aa-0.11□□□□□ -2.43
SCFD1-216ENST00000555550 LRP6O75581 1613 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 TRAV13-2A0A0B4J235 113 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 TRAV1-2A0A0B4J238 106 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 IFNA17P01571 189 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 PIPP12273 146 aaPredicted RBP-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 LRP2P98164 4655 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 FAM74A4Q5TZK3 123 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 PP6455Q8WZ26 134 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 C2orf88Q9BSF0 95 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 PSMG3Q9BT73 122 aaPredicted RBP-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 PDCD10Q9BUL8 212 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 NDUFA4L2Q9NRX3 87 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 SCN3BQ9NY72 215 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 A0A0C4DFX4 3053 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 EP400Q96L91 3159 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 DCHS1Q96JQ0 3298 aa-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 MYH9P35579 1960 aaKnown RBP-0.12□□□□□ -2.43
SCFD1-216ENST00000555550 PPIP5K1Q6PFW1 1433 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 HSPG2P98160 4391 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 HMGXB3Q12766 1538 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 TET3O43151 1660 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 MYOM2P54296 1465 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 TNFP01375 233 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 C12orf73Q69YU5 71 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 RPL13AP3Q6NVV1 102 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 SSBP3-AS1Q7Z2R9 100 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 SPRR4Q96PI1 79 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 CNFNQ9BYD5 112 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 LENEPQ9Y5L5 61 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 MYH8P13535 1937 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 C2CD3Q4AC94 2353 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 NSD3Q9BZ95 1437 aa-0.13□□□□□ -2.43
SCFD1-216ENST00000555550 MAP1AP78559 2803 aaPredicted RBP-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 BOD1L1Q8NFC6 3051 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 NBEAQ8NFP9 2946 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 ZNF815PA8K554 130 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 F2Z2F3 143 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 MT4P47944 62 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 Q56UQ5 140 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 Q5BKY6 102 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 C5orf38Q86SI9 138 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 TSLPQ969D9 159 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 CYP4F30PQ9H0H9 118 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 NAA60Q9H7X0 242 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 CDC42SE2Q9NRR3 84 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 PIEZO2Q9H5I5 2752 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 C10orf71Q711Q0 1435 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 SMG6Q86US8 1419 aaKnown RBP-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 ALMS1Q8TCU4 4167 aa-0.14□□□□□ -2.43
SCFD1-216ENST00000555550 MRC2Q9UBG0 1479 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 LRRC37A2A6NM11 1700 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 SPHKAPQ2M3C7 1700 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 TRBV7-3A0A075B6L6 115 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 M0R135 149 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 KRTAP19-6Q3LI70 58 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 COMMD6Q7Z4G1 85 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 BAGE3Q86Y29 109 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 DPH3P1Q9H4G8 78 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 IER3IP1Q9Y5U9 82 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 WNK2Q9Y3S1 2297 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 TLN2Q9Y4G6 2542 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 KIF21AQ7Z4S6 1674 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 PSME4Q14997 1843 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 DOCK2Q92608 1830 aa-0.15□□□□□ -2.43
SCFD1-216ENST00000555550 PZPP20742 1482 aa-0.16□□□□□ -2.43
SCFD1-216ENST00000555550 TULP4Q9NRJ4 1543 aa-0.16□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms