RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 ZNF415Q09FC8 603 aa11.41□□□□□ -0.58
SYNE3-203ENST00000554873 KLLNB2CW77 178 aa11.4□□□□□ -0.58
SYNE3-203ENST00000554873 EDN2P20800 178 aa11.4□□□□□ -0.58
SYNE3-203ENST00000554873 LINC00336Q6ZUF6 198 aa11.4□□□□□ -0.58
SYNE3-203ENST00000554873 Q8N2B8 174 aa11.4□□□□□ -0.58
SYNE3-203ENST00000554873 FAM104AQ969W3 186 aa11.4□□□□□ -0.58
SYNE3-203ENST00000554873 IGHG2P01859 326 aa11.4□□□□□ -0.59
SYNE3-203ENST00000554873 FAM218AQ96MZ4 157 aa11.4□□□□□ -0.59
SYNE3-203ENST00000554873 NDUFA1O15239 70 aa11.39□□□□□ -0.59
SYNE3-203ENST00000554873 BLCAPP62952 87 aa11.39□□□□□ -0.59
SYNE3-203ENST00000554873 C1orf43Q9BWL3 253 aa11.39□□□□□ -0.59
SYNE3-203ENST00000554873 IGHV4-38-2P0DP08 117 aa11.38□□□□□ -0.59
SYNE3-203ENST00000554873 COPS9Q8WXC6 57 aa11.38□□□□□ -0.59
SYNE3-203ENST00000554873 NACAE9PAV3 2078 aa11.38□□□□□ -0.59
SYNE3-203ENST00000554873 H3BUA1 57 aa11.38□□□□□ -0.59
SYNE3-203ENST00000554873 LINC00846Q9NV44 126 aa11.37□□□□□ -0.59
SYNE3-203ENST00000554873 EPM2AB3EWF7 344 aa11.37□□□□□ -0.59
SYNE3-203ENST00000554873 H3BUX3 64 aa11.37□□□□□ -0.59
SYNE3-203ENST00000554873 PSMB8P28062 276 aa11.37□□□□□ -0.59
SYNE3-203ENST00000554873 COL12A1Q99715 3063 aa11.37□□□□□ -0.59
SYNE3-203ENST00000554873 C19orf84I3L1E1 186 aa11.36□□□□□ -0.59
SYNE3-203ENST00000554873 Q9HAA7 133 aa11.36□□□□□ -0.59
SYNE3-203ENST00000554873 UBE2D4Q9Y2X8 147 aa11.36□□□□□ -0.59
SYNE3-203ENST00000554873 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.36□□□□□ -0.593e-6■■■■□ 26.2
SYNE3-203ENST00000554873 A6NDX4 124 aa11.36□□□□□ -0.59
SYNE3-203ENST00000554873 C9orf85Q96MD7 179 aa11.36□□□□□ -0.59
SYNE3-203ENST00000554873 IGHV4-61A0A0C4DH41 118 aa11.35□□□□□ -0.59
SYNE3-203ENST00000554873 FAM236DA0A1B0GTK5 79 aa11.35□□□□□ -0.59
SYNE3-203ENST00000554873 FAM236CP0DP71 79 aa11.35□□□□□ -0.59
SYNE3-203ENST00000554873 RNASE13Q5GAN3 156 aaKnown RBP11.35□□□□□ -0.59
SYNE3-203ENST00000554873 TRAV12-2A0A075B6T6 113 aa11.35□□□□□ -0.59
SYNE3-203ENST00000554873 TMEM243Q9BU79 118 aa11.35□□□□□ -0.59
SYNE3-203ENST00000554873 SERP1Q9Y6X1 66 aa11.35□□□□□ -0.59
SYNE3-203ENST00000554873 MAP1AP78559 2803 aaPredicted RBP11.35□□□□□ -0.59
SYNE3-203ENST00000554873 IGLV1-40P01703 118 aa11.34□□□□□ -0.59
SYNE3-203ENST00000554873 PIMREGQ9BSJ6 248 aa11.34□□□□□ -0.59
SYNE3-203ENST00000554873 C14orf132Q9NPU4 83 aa11.34□□□□□ -0.59
SYNE3-203ENST00000554873 RPL35AP18077 110 aaKnown RBP11.34□□□□□ -0.59
SYNE3-203ENST00000554873 PRORYQ9H606 182 aa11.33□□□□□ -0.6
SYNE3-203ENST00000554873 SOSTDC1Q6X4U4 206 aa11.32□□□□□ -0.6
SYNE3-203ENST00000554873 SORL1Q92673 2214 aa11.32□□□□□ -0.6
SYNE3-203ENST00000554873 IGHV3-16A0A0C4DH30 117 aa11.32□□□□□ -0.6
SYNE3-203ENST00000554873 OBSCN-AS1Q96MR7 158 aa11.32□□□□□ -0.6
SYNE3-203ENST00000554873 OVOL2Q9BRP0 275 aa11.32□□□□□ -0.6
SYNE3-203ENST00000554873 K7EMT4 169 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 GHRHP01286 108 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 IGKV3-20P01619 116 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 HIST2H2BCQ6DN03 193 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 HIST2H2BDQ6DRA6 164 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 SPG11Q96JI7 2443 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 NCOR2Q9Y618 2525 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 RBMY1BA6NDE4 496 aaKnown RBP11.31□□□□□ -0.6
SYNE3-203ENST00000554873 RBMY1EA6NEQ0 496 aaKnown RBP11.31□□□□□ -0.6
SYNE3-203ENST00000554873 RBMY1DP0C7P1 496 aaKnown RBP11.31□□□□□ -0.6
SYNE3-203ENST00000554873 RBMY1A1P0DJD3 496 aaKnown RBP11.31□□□□□ -0.6
SYNE3-203ENST00000554873 RBMY1CP0DJD4 496 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 RBMY1FQ15415 496 aaKnown RBP11.31□□□□□ -0.6
SYNE3-203ENST00000554873 TMEM86BQ8N661 226 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 Q9H8V8 135 aa11.31□□□□□ -0.6
SYNE3-203ENST00000554873 CSPG4Q6UVK1 2322 aa11.3□□□□□ -0.6
SYNE3-203ENST00000554873 CDKN2A-AS1Q9UH64 79 aa11.3□□□□□ -0.6
SYNE3-203ENST00000554873 PKIGQ9Y2B9 76 aa11.3□□□□□ -0.6
SYNE3-203ENST00000554873 A0A0U1RRA0 63 aa11.3□□□□□ -0.6
SYNE3-203ENST00000554873 CFHR3Q02985 330 aa11.3□□□□□ -0.6
SYNE3-203ENST00000554873 C9orf129Q5T035 196 aaKnown RBP11.3□□□□□ -0.6
SYNE3-203ENST00000554873 HOXD3P31249 432 aaPredicted RBP11.29□□□□□ -0.6
SYNE3-203ENST00000554873 RPL28P46779 137 aaKnown RBP11.29□□□□□ -0.6
SYNE3-203ENST00000554873 IGLV5-45A0A087WSX0 123 aa11.28□□□□□ -0.6
SYNE3-203ENST00000554873 C20orf197Q8N268 126 aa11.28□□□□□ -0.6
SYNE3-203ENST00000554873 ZNF625Q96I27 306 aaPredicted RBP11.28□□□□□ -0.6
SYNE3-203ENST00000554873 SPTBN4Q9H254 2564 aa11.28□□□□□ -0.6
SYNE3-203ENST00000554873 CHD8Q9HCK8 2581 aa11.28□□□□□ -0.6
SYNE3-203ENST00000554873 PF4P02776 101 aa11.27□□□□□ -0.6
SYNE3-203ENST00000554873 XCL1P47992 114 aa11.27□□□□□ -0.61
SYNE3-203ENST00000554873 XCL2Q9UBD3 114 aa11.27□□□□□ -0.61
SYNE3-203ENST00000554873 HILS1P60008 231 aa11.26□□□□□ -0.61
SYNE3-203ENST00000554873 TRAV13-2A0A0B4J235 113 aa11.26□□□□□ -0.61
SYNE3-203ENST00000554873 C10orf99Q6UWK7 81 aa11.26□□□□□ -0.61
SYNE3-203ENST00000554873 IGHV1OR15-1A0A075B7D0 117 aa11.25□□□□□ -0.61
SYNE3-203ENST00000554873 IGLV5-39A0A0G2JS06 123 aa11.25□□□□□ -0.61
SYNE3-203ENST00000554873 AVPP01185 164 aa11.25□□□□□ -0.61
SYNE3-203ENST00000554873 SPINK13Q1W4C9 94 aa11.25□□□□□ -0.61
SYNE3-203ENST00000554873 S100A7L2Q5SY68 101 aa11.25□□□□□ -0.61
SYNE3-203ENST00000554873 ATP5EP2Q5VTU8 51 aa11.25□□□□□ -0.61
SYNE3-203ENST00000554873 C16orf95Q9H693 158 aa11.25□□□□□ -0.61
SYNE3-203ENST00000554873 IGHV4-30-2A0A087WSY4 118 aa11.24□□□□□ -0.61
SYNE3-203ENST00000554873 SMIM26A0A096LP01 95 aa11.24□□□□□ -0.61
SYNE3-203ENST00000554873 SEC61GP60059 68 aa11.24□□□□□ -0.61
SYNE3-203ENST00000554873 CHCHD7Q9BUK0 85 aa11.24□□□□□ -0.61
SYNE3-203ENST00000554873 DOPEY2Q9Y3R5 2298 aa11.24□□□□□ -0.61
SYNE3-203ENST00000554873 TRAV23DV6A0A075B6W5 121 aa11.24□□□□□ -0.61
SYNE3-203ENST00000554873 A0A087WYN8 130 aa11.23□□□□□ -0.61
SYNE3-203ENST00000554873 H7BZZ5 65 aa11.23□□□□□ -0.61
SYNE3-203ENST00000554873 K7EQG2 157 aa11.23□□□□□ -0.61
SYNE3-203ENST00000554873 GNLYP22749 145 aa11.23□□□□□ -0.61
SYNE3-203ENST00000554873 SNRPD3P62318 126 aaKnown RBP11.23□□□□□ -0.61
SYNE3-203ENST00000554873 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.23□□□□□ -0.61
SYNE3-203ENST00000554873 CRYBG3Q68DQ2 2970 aa11.23□□□□□ -0.61
SYNE3-203ENST00000554873 CRPP02741 224 aa11.22□□□□□ -0.61
SYNE3-203ENST00000554873 MSMBP08118 114 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms