RNA–Protein interactions for RNA: ENST00000554707.1

PCNX1-208, Transcript of pecanex 1, humanhuman

TSL 3

Gene PCNX1, Length 475 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCNX1-208ENST00000554707 CSPG4Q6UVK1 2322 aa-0.89□□□□□ -2.55
PCNX1-208ENST00000554707 BAGE2Q86Y30 109 aa-0.9□□□□□ -2.55
PCNX1-208ENST00000554707 ANP32BQ92688 251 aaKnown RBP-0.9□□□□□ -2.55
PCNX1-208ENST00000554707 DPH3Q96FX2 82 aa-0.9□□□□□ -2.55
PCNX1-208ENST00000554707 SETXQ7Z333 2677 aaKnown RBP-0.9□□□□□ -2.55
PCNX1-208ENST00000554707 WNK3Q9BYP7 1800 aa-0.91□□□□□ -2.55
PCNX1-208ENST00000554707 SPAARA0A1B0GVQ0 90 aa-0.91□□□□□ -2.56
PCNX1-208ENST00000554707 SMIM21Q3B7S5 101 aa-0.91□□□□□ -2.56
PCNX1-208ENST00000554707 TMEM191AQ9H0A3 160 aa-0.91□□□□□ -2.56
PCNX1-208ENST00000554707 LINC00472Q9H8W2 130 aa-0.91□□□□□ -2.56
PCNX1-208ENST00000554707 SPTBN1Q01082 2364 aaKnown RBP-0.91□□□□□ -2.56
PCNX1-208ENST00000554707 WDR7Q9Y4E6 1490 aa-0.92□□□□□ -2.56
PCNX1-208ENST00000554707 KDM3BQ7LBC6 1761 aa-0.92□□□□□ -2.56
PCNX1-208ENST00000554707 F8VRH5 84 aa-0.92□□□□□ -2.56
PCNX1-208ENST00000554707 MAFIPQ8WZ33 124 aa-0.92□□□□□ -2.56
PCNX1-208ENST00000554707 AMELXQ99217 191 aa-0.92□□□□□ -2.56
PCNX1-208ENST00000554707 EPPK1P58107 5090 aaKnown RBP-0.93□□□□□ -2.56
PCNX1-208ENST00000554707 UQCR11O14957 56 aa-0.93□□□□□ -2.56
PCNX1-208ENST00000554707 APOC3P02656 99 aa-0.93□□□□□ -2.56
PCNX1-208ENST00000554707 CCDC167Q9P0B6 97 aa-0.93□□□□□ -2.56
PCNX1-208ENST00000554707 ACANP16112 2415 aa-0.93□□□□□ -2.56
PCNX1-208ENST00000554707 PXDNQ92626 1479 aa-0.93□□□□□ -2.56
PCNX1-208ENST00000554707 WNK1Q9H4A3 2382 aa-0.93□□□□□ -2.56
PCNX1-208ENST00000554707 PLXNB2O15031 1838 aa-0.94□□□□□ -2.56
PCNX1-208ENST00000554707 PPIP5K1Q6PFW1 1433 aa-0.94□□□□□ -2.56
PCNX1-208ENST00000554707 SPINK4O60575 86 aa-0.94□□□□□ -2.56
PCNX1-208ENST00000554707 Q6AWC8 147 aa-0.94□□□□□ -2.56
PCNX1-208ENST00000554707 TSLPQ969D9 159 aa-0.94□□□□□ -2.56
PCNX1-208ENST00000554707 IGLC7A0M8Q6 106 aa-0.95□□□□□ -2.56
PCNX1-208ENST00000554707 KLK9Q2XQG4 91 aa-0.95□□□□□ -2.56
PCNX1-208ENST00000554707 Q8N8P6 123 aa-0.95□□□□□ -2.56
PCNX1-208ENST00000554707 COPS9Q8WXC6 57 aa-0.95□□□□□ -2.56
PCNX1-208ENST00000554707 NDUFA4L2Q9NRX3 87 aa-0.95□□□□□ -2.56
PCNX1-208ENST00000554707 ZNF236Q9UL36 1845 aa-0.95□□□□□ -2.56
PCNX1-208ENST00000554707 STARD9Q9P2P6 4700 aa-0.95□□□□□ -2.56
PCNX1-208ENST00000554707 TPPP2P59282 170 aa-0.96□□□□□ -2.56
PCNX1-208ENST00000554707 LSM10Q969L4 123 aaKnown RBP-0.96□□□□□ -2.56
PCNX1-208ENST00000554707 DYNLRB1Q9NP97 96 aa-0.96□□□□□ -2.56
PCNX1-208ENST00000554707 LRRC37A2A6NM11 1700 aa-0.96□□□□□ -2.56
PCNX1-208ENST00000554707 PRDM2Q13029 1718 aa-0.96□□□□□ -2.56
PCNX1-208ENST00000554707 PAPPAQ13219 1627 aa-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 SETD2Q9BYW2 2564 aaPredicted RBP-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 MYH6P13533 1939 aa-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 EP300Q09472 2414 aaPredicted RBP-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 NWD2Q9ULI1 1742 aa-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 M0R2T5 61 aa-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 ARPC4P59998 168 aa-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 C12orf73Q69YU5 71 aa-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 PFDN5Q99471 154 aa-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 MGST2Q99735 147 aa-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 FLNBO75369 2602 aaKnown RBP-0.97□□□□□ -2.56
PCNX1-208ENST00000554707 MAP1AP78559 2803 aaPredicted RBP-0.97□□□□□ -2.57
PCNX1-208ENST00000554707 ARAP2Q8WZ64 1704 aa-0.98□□□□□ -2.57
PCNX1-208ENST00000554707 POLA1P09884 1462 aaPredicted RBP-0.98□□□□□ -2.57
PCNX1-208ENST00000554707 DEFB105AQ8NG35 78 aa-0.98□□□□□ -2.57
PCNX1-208ENST00000554707 LINC01558Q9Y6Z2 57 aa-0.98□□□□□ -2.57
PCNX1-208ENST00000554707 GVINP1Q7Z2Y8 2422 aa-0.99□□□□□ -2.57
PCNX1-208ENST00000554707 TRBV7-3A0A075B6L6 115 aa-0.99□□□□□ -2.57
PCNX1-208ENST00000554707 STAB2Q8WWQ8 2551 aa-0.99□□□□□ -2.57
PCNX1-208ENST00000554707 MYO7BQ6PIF6 2116 aa-1□□□□□ -2.57
PCNX1-208ENST00000554707 FAM25AB3EWG3 89 aa-1□□□□□ -2.57
PCNX1-208ENST00000554707 FAM25CB3EWG5 89 aa-1□□□□□ -2.57
PCNX1-208ENST00000554707 FAM25GB3EWG6 89 aa-1□□□□□ -2.57
PCNX1-208ENST00000554707 HMGN4O00479 90 aa-1□□□□□ -2.57
PCNX1-208ENST00000554707 SFT2D2O95562 160 aa-1□□□□□ -2.57
PCNX1-208ENST00000554707 DEFB123Q8N688 67 aa-1□□□□□ -2.57
PCNX1-208ENST00000554707 SERP1Q9Y6X1 66 aa-1□□□□□ -2.57
PCNX1-208ENST00000554707 ATRQ13535 2644 aa-1□□□□□ -2.57
PCNX1-208ENST00000554707 NBEAL1Q6ZS30 2694 aa-1.01□□□□□ -2.57
PCNX1-208ENST00000554707 RERGLQ9H628 205 aa-1.01□□□□□ -2.57
PCNX1-208ENST00000554707 SONP18583 2426 aaKnown RBP-1.01□□□□□ -2.57
PCNX1-208ENST00000554707 MEIG1Q5JSS6 88 aa-1.02□□□□□ -2.57
PCNX1-208ENST00000554707 MRPL54Q6P161 138 aaKnown RBP-1.02□□□□□ -2.57
PCNX1-208ENST00000554707 FDCSPQ8NFU4 85 aa-1.02□□□□□ -2.57
PCNX1-208ENST00000554707 CHD8Q9HCK8 2581 aa-1.02□□□□□ -2.57
PCNX1-208ENST00000554707 RNF213Q63HN8 5207 aa-1.02□□□□□ -2.57
PCNX1-208ENST00000554707 RYR2Q92736 4967 aa-1.03□□□□□ -2.57
PCNX1-208ENST00000554707 TSC2P49815 1807 aa-1.03□□□□□ -2.57
PCNX1-208ENST00000554707 BIRC6Q9NR09 4857 aa-1.03□□□□□ -2.57
PCNX1-208ENST00000554707 SHANK2Q9UPX8 1470 aa-1.03□□□□□ -2.57
PCNX1-208ENST00000554707 MIF4GDA9UHW6 222 aaKnown RBP-1.03□□□□□ -2.57
PCNX1-208ENST00000554707 SYS1-DBNDD2H3BUS1 97 aa-1.03□□□□□ -2.57
PCNX1-208ENST00000554707 UBA52P62987 128 aaKnown RBP-1.03□□□□□ -2.57
PCNX1-208ENST00000554707 MYH8P13535 1937 aa-1.03□□□□□ -2.57
PCNX1-208ENST00000554707 SPEF2Q9C093 1822 aa-1.03□□□□□ -2.57
PCNX1-208ENST00000554707 SPTA1P02549 2419 aa-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 CFTRP13569 1480 aa-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 MYOM3Q5VTT5 1437 aa-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 TEP1Q99973 2627 aaKnown RBP-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 LOC285095A0A1B0GVY8 99 aa-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 MGPP08493 103 aa-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 PPP3R2Q96LZ3 170 aa-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 FAIMQ9NVQ4 179 aa-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 CNOT1A5YKK6 2376 aaKnown RBP-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 KIF21AQ7Z4S6 1674 aa-1.04□□□□□ -2.58
PCNX1-208ENST00000554707 GRIN2AQ12879 1464 aa-1.05□□□□□ -2.58
PCNX1-208ENST00000554707 GAPVD1Q14C86 1478 aa-1.05□□□□□ -2.58
PCNX1-208ENST00000554707 TRBV7-4A0A0J9YYF1 115 aa-1.05□□□□□ -2.58
PCNX1-208ENST00000554707 LOC105371267A0A1B0GV96 52 aa-1.05□□□□□ -2.58
PCNX1-208ENST00000554707 CHKB-CPT1BH3BT56 60 aa-1.05□□□□□ -2.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms