RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SPANXA1Q9NS26 97 aa8.22□□□□□ -1.09
SHMT2-209ENST00000553949 PRR34Q9NV39 138 aa8.22□□□□□ -1.09
SHMT2-209ENST00000553949 HIST1H2BKO60814 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST1H2BJP06899 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST1H2BOP23527 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST1H2BBP33778 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST1H2BDP58876 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST1H2BCP62807 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 REG3AQ06141 175 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST2H2BEQ16778 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.21□□□□□ -1.1
SHMT2-209ENST00000553949 NFE4Q86UQ8 179 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 ZNF664Q8N3J9 261 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST1H2BHQ93079 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 TOMM6Q96B49 74 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 CHCHD1Q96BP2 118 aaKnown RBP8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST1H2BNQ99877 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 HIST1H2BMQ99879 126 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 PYGO1Q9Y3Y4 419 aa8.21□□□□□ -1.1
SHMT2-209ENST00000553949 MIAQ16674 131 aa8.2□□□□□ -1.1
SHMT2-209ENST00000553949 Q6ZUT4 128 aa8.2□□□□□ -1.1
SHMT2-209ENST00000553949 FAM104AQ969W3 186 aa8.2□□□□□ -1.1
SHMT2-209ENST00000553949 IGIPA6NJ69 53 aa8.19□□□□□ -1.1
SHMT2-209ENST00000553949 C1orf196B1AJZ1 125 aa8.19□□□□□ -1.1
SHMT2-209ENST00000553949 MRPS36P82909 103 aaKnown RBP8.19□□□□□ -1.1
SHMT2-209ENST00000553949 PMCHL1Q16048 86 aa8.19□□□□□ -1.1
SHMT2-209ENST00000553949 RNASE13Q5GAN3 156 aaKnown RBP8.19□□□□□ -1.1
SHMT2-209ENST00000553949 Q6ZRN7 208 aaPredicted RBP8.19□□□□□ -1.1
SHMT2-209ENST00000553949 OPRPNQ99935 248 aaPredicted RBP8.19□□□□□ -1.1
SHMT2-209ENST00000553949 FAT2Q9NYQ8 4349 aa8.19□□□□□ -1.1
SHMT2-209ENST00000553949 FRAS1Q86XX4 4008 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 IGLV4-3A0A075B6K6 122 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 A0A096LNJ9 63 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 IGKV3OR2-268A0A0C4DH90 116 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 LINC01549A6NIU2 74 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 RTL8CO15255 209 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 HSBP1O75506 76 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 SERF1AO75920 110 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 HBDP02042 147 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 LINC00310P59036 64 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 RMI2Q96E14 147 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 SCGB3A1Q96QR1 104 aa8.18□□□□□ -1.1
SHMT2-209ENST00000553949 IGKV2D-24A0A075B6R9 120 aa8.17□□□□□ -1.1
SHMT2-209ENST00000553949 TRAV8-4A0A0B4J246 113 aa8.17□□□□□ -1.1
SHMT2-209ENST00000553949 NPSP0C0P6 89 aa8.17□□□□□ -1.1
SHMT2-209ENST00000553949 ERASQ7Z444 233 aa8.17□□□□□ -1.1
SHMT2-209ENST00000553949 TMEM141Q96I45 108 aa8.17□□□□□ -1.1
SHMT2-209ENST00000553949 TIMM17AQ99595 171 aa8.17□□□□□ -1.1
SHMT2-209ENST00000553949 C1orf43Q9BWL3 253 aa8.17□□□□□ -1.1
SHMT2-209ENST00000553949 TM2D2Q9BX73 214 aa8.17□□□□□ -1.1
SHMT2-209ENST00000553949 IGLV10-54A0A075B6I4 117 aa8.16□□□□□ -1.1
SHMT2-209ENST00000553949 LINC00959A0A1B0GUT2 108 aa8.16□□□□□ -1.1
SHMT2-209ENST00000553949 NUPR1O60356 82 aa8.16□□□□□ -1.1
SHMT2-209ENST00000553949 Q6ZN92 141 aa8.16□□□□□ -1.1
SHMT2-209ENST00000553949 COX11Q9Y6N1 276 aa8.16□□□□□ -1.1
SHMT2-209ENST00000553949 PSCAO43653 123 aa8.15□□□□□ -1.1
SHMT2-209ENST00000553949 PDZD11Q5EBL8 140 aa8.15□□□□□ -1.1
SHMT2-209ENST00000553949 PAPPA-AS1Q5QFB9 102 aa8.15□□□□□ -1.1
SHMT2-209ENST00000553949 TEX43Q6ZNM6 134 aa8.15□□□□□ -1.1
SHMT2-209ENST00000553949 FAM19A2Q8N3H0 131 aa8.15□□□□□ -1.1
SHMT2-209ENST00000553949 VCX2Q9H322 139 aa8.15□□□□□ -1.1
SHMT2-209ENST00000553949 TRAV13-1A0A0B4J241 112 aa8.14□□□□□ -1.11
SHMT2-209ENST00000553949 IFITM10A6NMD0 228 aa8.14□□□□□ -1.11
SHMT2-209ENST00000553949 SS18Q15532 418 aa8.14□□□□□ -1.11
SHMT2-209ENST00000553949 ZC2HC1BQ5TFG8 222 aa8.14□□□□□ -1.11
SHMT2-209ENST00000553949 KRTAP26-1Q6PEX3 210 aa8.14□□□□□ -1.11
SHMT2-209ENST00000553949 CHCHD10Q8WYQ3 142 aaPredicted RBP8.14□□□□□ -1.11
SHMT2-209ENST00000553949 AMELXQ99217 191 aa8.14□□□□□ -1.11
SHMT2-209ENST00000553949 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.13□□□□□ -1.11
SHMT2-209ENST00000553949 CCL25O15444 150 aa8.13□□□□□ -1.11
SHMT2-209ENST00000553949 ATP5LO75964 103 aa8.13□□□□□ -1.11
SHMT2-209ENST00000553949 NDUFA6P56556 154 aa8.13□□□□□ -1.11
SHMT2-209ENST00000553949 TNP2Q05952 138 aa8.13□□□□□ -1.11
SHMT2-209ENST00000553949 COA6Q5JTJ3 125 aaKnown RBP8.13□□□□□ -1.11
SHMT2-209ENST00000553949 LINC00336Q6ZUF6 198 aa8.13□□□□□ -1.11
SHMT2-209ENST00000553949 LINC00173Q6ZV60 143 aa8.13□□□□□ -1.11
SHMT2-209ENST00000553949 MAPKAPK5-AS1Q8N8E1 139 aa8.13□□□□□ -1.11
SHMT2-209ENST00000553949 C2orf88Q9BSF0 95 aa8.13□□□□□ -1.11
SHMT2-209ENST00000553949 GAGE12HA6NDE8 117 aa8.12□□□□□ -1.11
SHMT2-209ENST00000553949 PRSS29PA6NIE9 313 aa8.12□□□□□ -1.11
SHMT2-209ENST00000553949 XCL1P47992 114 aa8.12□□□□□ -1.11
SHMT2-209ENST00000553949 BAALCQ8WXS3 180 aa8.12□□□□□ -1.11
SHMT2-209ENST00000553949 DNAH11Q96DT5 4516 aa8.12□□□□□ -1.11
SHMT2-209ENST00000553949 UBE2D1P51668 147 aa8.11□□□□□ -1.11
SHMT2-209ENST00000553949 PMVKQ15126 192 aa8.11□□□□□ -1.11
SHMT2-209ENST00000553949 CD164L2Q6UWJ8 174 aa8.11□□□□□ -1.11
SHMT2-209ENST00000553949 CST9LQ9H4G1 147 aa8.11□□□□□ -1.11
SHMT2-209ENST00000553949 A0A087WTM6 91 aa8.1□□□□□ -1.11
SHMT2-209ENST00000553949 LRCOL1A6NCL2 159 aa8.1□□□□□ -1.11
SHMT2-209ENST00000553949 LEPROTL1O95214 131 aa8.1□□□□□ -1.11
SHMT2-209ENST00000553949 FOXI1Q12951 378 aa8.1□□□□□ -1.11
SHMT2-209ENST00000553949 IFI27L1Q96BM0 104 aa8.1□□□□□ -1.11
SHMT2-209ENST00000553949 LINC00242Q5T6M2 205 aa8.09□□□□□ -1.11
SHMT2-209ENST00000553949 HSPB8Q9UJY1 196 aa8.09□□□□□ -1.11
SHMT2-209ENST00000553949 LECT2O14960 151 aa8.08□□□□□ -1.12
SHMT2-209ENST00000553949 PRSS1P07477 247 aa8.08□□□□□ -1.12
SHMT2-209ENST00000553949 FABP4P15090 132 aa8.08□□□□□ -1.12
SHMT2-209ENST00000553949 WFDC2Q14508 124 aa8.08□□□□□ -1.12
SHMT2-209ENST00000553949 IGHV3OR16-9A0A0B4J2B5 98 aa8.07□□□□□ -1.12
SHMT2-209ENST00000553949 USP17L23D6RBM5 183 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms