RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 USP17L23D6RBM5 183 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 PHOX2AO14813 284 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 MT1HL1P0DM35 61 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 CKS2P33552 79 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 HNRNPA3P51991 378 aaKnown RBP7.62□□□□□ -1.19
SRP54-203ENST00000553544 REG3AQ06141 175 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 RHEBQ15382 184 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 CLPSL2Q6UWE3 100 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 Q6ZRU5 148 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 RPL39LQ96EH5 51 aaKnown RBP7.62□□□□□ -1.19
SRP54-203ENST00000553544 KIR2DL4Q99706 377 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 RNF213Q63HN8 5207 aa7.62□□□□□ -1.19
SRP54-203ENST00000553544 A0A1B0GXF2 115 aa7.61□□□□□ -1.19
SRP54-203ENST00000553544 VCYO14598 125 aa7.61□□□□□ -1.19
SRP54-203ENST00000553544 ZNF25P17030 456 aaPredicted RBP7.61□□□□□ -1.19
SRP54-203ENST00000553544 SUMO2P61956 95 aaKnown RBP7.61□□□□□ -1.19
SRP54-203ENST00000553544 AMMECR1LQ6DCA0 310 aa7.61□□□□□ -1.19
SRP54-203ENST00000553544 TMEM18Q96B42 140 aa7.61□□□□□ -1.19
SRP54-203ENST00000553544 RNF185Q96GF1 192 aa7.61□□□□□ -1.19
SRP54-203ENST00000553544 C20orf78Q9BR46 151 aa7.61□□□□□ -1.19
SRP54-203ENST00000553544 TMEM242Q9NWH2 141 aa7.61□□□□□ -1.19
SRP54-203ENST00000553544 LAMTOR2Q9Y2Q5 125 aa7.61□□□□□ -1.19
SRP54-203ENST00000553544 TRAV8-4A0A0B4J246 113 aa7.6□□□□□ -1.19
SRP54-203ENST00000553544 TRBV27A0A0K0K1C4 114 aa7.6□□□□□ -1.19
SRP54-203ENST00000553544 HLA-DQA1P01909 254 aa7.6□□□□□ -1.19
SRP54-203ENST00000553544 PRSS1P07477 247 aa7.6□□□□□ -1.19
SRP54-203ENST00000553544 ADCYAP1P18509 176 aa7.6□□□□□ -1.19
SRP54-203ENST00000553544 FCER1GP30273 86 aa7.6□□□□□ -1.19
SRP54-203ENST00000553544 RPL32P62910 135 aaKnown RBP7.6□□□□□ -1.19
SRP54-203ENST00000553544 COX19Q49B96 90 aa7.6□□□□□ -1.19
SRP54-203ENST00000553544 MRPL51Q4U2R6 128 aaKnown RBP7.6□□□□□ -1.19
SRP54-203ENST00000553544 ORMDL3Q8N138 153 aa7.6□□□□□ -1.19
SRP54-203ENST00000553544 CARHSP1Q9Y2V2 147 aaKnown RBP7.6□□□□□ -1.19
SRP54-203ENST00000553544 PKHD1L1Q86WI1 4243 aa7.6□□□□□ -1.19
SRP54-203ENST00000553544 C7orf77A4D0Y5 90 aa7.59□□□□□ -1.19
SRP54-203ENST00000553544 GAS8-AS1O95177 125 aa7.59□□□□□ -1.19
SRP54-203ENST00000553544 DGAT2L7PQ6IED9 249 aa7.59□□□□□ -1.19
SRP54-203ENST00000553544 SVBPQ8N300 66 aa7.59□□□□□ -1.19
SRP54-203ENST00000553544 TMEM101Q96IK0 257 aa7.59□□□□□ -1.19
SRP54-203ENST00000553544 LRP2P98164 4655 aa7.58□□□□□ -1.2
SRP54-203ENST00000553544 IGLV10-54A0A075B6I4 117 aa7.58□□□□□ -1.2
SRP54-203ENST00000553544 TRBV24-1A0A075B6N3 115 aa7.58□□□□□ -1.2
SRP54-203ENST00000553544 D6R8Y8 96 aa7.58□□□□□ -1.2
SRP54-203ENST00000553544 SNAPINO95295 136 aa7.58□□□□□ -1.2
SRP54-203ENST00000553544 POLR2KP53803 58 aaKnown RBP7.58□□□□□ -1.2
SRP54-203ENST00000553544 C10orf91Q5T1B1 145 aa7.58□□□□□ -1.2
SRP54-203ENST00000553544 RNASEKQ6P5S7 137 aaKnown RBP7.57□□□□□ -1.2
SRP54-203ENST00000553544 NRACQ8N912 160 aa7.57□□□□□ -1.2
SRP54-203ENST00000553544 C9orf163Q8N9P6 203 aa7.57□□□□□ -1.2
SRP54-203ENST00000553544 CLRN3Q8NCR9 226 aa7.57□□□□□ -1.2
SRP54-203ENST00000553544 TNFRSF6BO95407 300 aa7.56□□□□□ -1.2
SRP54-203ENST00000553544 ESDP10768 282 aa7.56□□□□□ -1.2
SRP54-203ENST00000553544 RPS10P46783 165 aaKnown RBP7.56□□□□□ -1.2
SRP54-203ENST00000553544 TMEM136Q6ZRR5 245 aa7.56□□□□□ -1.2
SRP54-203ENST00000553544 RPS10P5Q9NQ39 176 aa7.56□□□□□ -1.2
SRP54-203ENST00000553544 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.55□□□□□ -1.2
SRP54-203ENST00000553544 IGKV2-29A2NJV5 120 aaPredicted RBP7.55□□□□□ -1.2
SRP54-203ENST00000553544 SMKR1H3BMG3 65 aa7.55□□□□□ -1.2
SRP54-203ENST00000553544 TSHBP01222 138 aa7.55□□□□□ -1.2
SRP54-203ENST00000553544 MT-ND6P03923 174 aa7.55□□□□□ -1.2
SRP54-203ENST00000553544 FGF6P10767 208 aa7.55□□□□□ -1.2
SRP54-203ENST00000553544 RAB5AP20339 215 aa7.55□□□□□ -1.2
SRP54-203ENST00000553544 OR5A1Q8NGJ0 315 aa7.55□□□□□ -1.2
SRP54-203ENST00000553544 PRELID3AQ96N28 172 aa7.55□□□□□ -1.2
SRP54-203ENST00000553544 SMIM2Q9BVW6 85 aa7.55□□□□□ -1.2
SRP54-203ENST00000553544 MAP1LC3AQ9H492 121 aa7.55□□□□□ -1.2
SRP54-203ENST00000553544 K7EMI3 77 aa7.54□□□□□ -1.2
SRP54-203ENST00000553544 APOC3P02656 99 aa7.54□□□□□ -1.2
SRP54-203ENST00000553544 G0S2P27469 103 aa7.54□□□□□ -1.2
SRP54-203ENST00000553544 CNBPP62633 177 aaKnown RBP7.54□□□□□ -1.2
SRP54-203ENST00000553544 DPH3Q96FX2 82 aa7.54□□□□□ -1.2
SRP54-203ENST00000553544 SLPIP03973 132 aa7.53□□□□□ -1.2
SRP54-203ENST00000553544 SDIM1Q6ZPB5 146 aa7.53□□□□□ -1.2
SRP54-203ENST00000553544 MRPL52Q86TS9 123 aaKnown RBP7.53□□□□□ -1.2
SRP54-203ENST00000553544 GNB1LQ9BYB4 327 aa7.53□□□□□ -1.2
SRP54-203ENST00000553544 CSDC2Q9Y534 153 aaKnown RBP7.53□□□□□ -1.2
SRP54-203ENST00000553544 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.53□□□□□ -1.2
SRP54-203ENST00000553544 GAGE12HA6NDE8 117 aa7.52□□□□□ -1.21
SRP54-203ENST00000553544 CCL25O15444 150 aa7.52□□□□□ -1.21
SRP54-203ENST00000553544 NPYP01303 97 aa7.52□□□□□ -1.21
SRP54-203ENST00000553544 C15orf56Q8N910 161 aa7.52□□□□□ -1.21
SRP54-203ENST00000553544 IGKV3OR2-268A0A0C4DH90 116 aa7.51□□□□□ -1.21
SRP54-203ENST00000553544 hDV102S1A0JD36 115 aa7.51□□□□□ -1.21
SRP54-203ENST00000553544 PRSS47A8MTI9 375 aa7.51□□□□□ -1.21
SRP54-203ENST00000553544 ORMDL2Q53FV1 153 aa7.51□□□□□ -1.21
SRP54-203ENST00000553544 CFAP161Q6P656 301 aa7.51□□□□□ -1.21
SRP54-203ENST00000553544 CHCHD10Q8WYQ3 142 aaPredicted RBP7.51□□□□□ -1.21
SRP54-203ENST00000553544 TIMM21Q9BVV7 248 aa7.51□□□□□ -1.21
SRP54-203ENST00000553544 NXT2Q9NPJ8 142 aaKnown RBP7.51□□□□□ -1.21
SRP54-203ENST00000553544 TNXBP22105 4242 aa7.51□□□□□ -1.21
SRP54-203ENST00000553544 LINC01549A6NIU2 74 aa7.5□□□□□ -1.21
SRP54-203ENST00000553544 PANO1I0J062 215 aa7.5□□□□□ -1.21
SRP54-203ENST00000553544 IFI27P40305 119 aaPredicted RBP7.5□□□□□ -1.21
SRP54-203ENST00000553544 CIRBPQ14011 172 aaKnown RBP7.5□□□□□ -1.21
SRP54-203ENST00000553544 SS18Q15532 418 aa7.5□□□□□ -1.21
SRP54-203ENST00000553544 CDC42SE2Q9NRR3 84 aa7.5□□□□□ -1.21
SRP54-203ENST00000553544 SPANXA1Q9NS26 97 aa7.5□□□□□ -1.21
SRP54-203ENST00000553544 LINC00959A0A1B0GUT2 108 aa7.49□□□□□ -1.21
SRP54-203ENST00000553544 FOXI1Q12951 378 aa7.49□□□□□ -1.21
SRP54-203ENST00000553544 ZNF664Q8N3J9 261 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms