RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 CHKB-CPT1BH3BT56 60 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 HSD52Q0P140 79 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 TMEM170BQ5T4T1 132 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 FAM167A-AS1Q96KT0 104 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 CNFNQ9BYD5 112 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 LINC00472Q9H8W2 130 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 CDC42SE2Q9NRR3 84 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 UQCR10Q9UDW1 63 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 SPHKAPQ2M3C7 1700 aa0.6□□□□□ -2.31
SCFD1-209ENST00000553280 H3BQ15 152 aa0.59□□□□□ -2.31
SCFD1-209ENST00000553280 ZFYVE16Q7Z3T8 1539 aa0.59□□□□□ -2.32
SCFD1-209ENST00000553280 ARHGEF5Q12774 1597 aa0.58□□□□□ -2.32
SCFD1-209ENST00000553280 USP24Q9UPU5 2620 aa0.58□□□□□ -2.32
SCFD1-209ENST00000553280 A0A0D9SFI3 127 aa0.58□□□□□ -2.32
SCFD1-209ENST00000553280 FAM213BQ8TBF2 198 aa0.58□□□□□ -2.32
SCFD1-209ENST00000553280 TCEAL7Q9BRU2 100 aa0.58□□□□□ -2.32
SCFD1-209ENST00000553280 ZNF236Q9UL36 1845 aa0.58□□□□□ -2.32
SCFD1-209ENST00000553280 LRP6O75581 1613 aa0.57□□□□□ -2.32
SCFD1-209ENST00000553280 NAP1L6A6NFF2 107 aa0.57□□□□□ -2.32
SCFD1-209ENST00000553280 SFT2D2O95562 160 aa0.57□□□□□ -2.32
SCFD1-209ENST00000553280 HAMPP81172 84 aa0.57□□□□□ -2.32
SCFD1-209ENST00000553280 C14orf144Q96I85 54 aa0.57□□□□□ -2.32
SCFD1-209ENST00000553280 TET3O43151 1660 aa0.56□□□□□ -2.32
SCFD1-209ENST00000553280 FAM208BQ5VWN6 2430 aa0.56□□□□□ -2.32
SCFD1-209ENST00000553280 ASXL3Q9C0F0 2248 aa0.56□□□□□ -2.32
SCFD1-209ENST00000553280 TRAV22A0A0B4J277 110 aa0.56□□□□□ -2.32
SCFD1-209ENST00000553280 UBE2D3P61077 147 aa0.56□□□□□ -2.32
SCFD1-209ENST00000553280 UBE2D2P62837 147 aa0.56□□□□□ -2.32
SCFD1-209ENST00000553280 Q0VG73 95 aa0.56□□□□□ -2.32
SCFD1-209ENST00000553280 CC2D2AQ9P2K1 1620 aa0.56□□□□□ -2.32
SCFD1-209ENST00000553280 KDM3BQ7LBC6 1761 aa0.55□□□□□ -2.32
SCFD1-209ENST00000553280 EHBP1L1Q8N3D4 1523 aa0.55□□□□□ -2.32
SCFD1-209ENST00000553280 TMEM262E9PQX1 116 aa0.55□□□□□ -2.32
SCFD1-209ENST00000553280 Q5BKY6 102 aa0.55□□□□□ -2.32
SCFD1-209ENST00000553280 PSME4Q14997 1843 aa0.54□□□□□ -2.32
SCFD1-209ENST00000553280 DIP2CQ9Y2E4 1556 aa0.54□□□□□ -2.32
SCFD1-209ENST00000553280 Q6JHZ5 121 aa0.54□□□□□ -2.32
SCFD1-209ENST00000553280 C12orf57Q99622 126 aa0.54□□□□□ -2.32
SCFD1-209ENST00000553280 NXT2Q9NPJ8 142 aaKnown RBP0.54□□□□□ -2.32
SCFD1-209ENST00000553280 MANBALQ9NQG1 85 aa0.54□□□□□ -2.32
SCFD1-209ENST00000553280 PRO0255Q9UI72 69 aa0.54□□□□□ -2.32
SCFD1-209ENST00000553280 HMGXB3Q12766 1538 aa0.54□□□□□ -2.32
SCFD1-209ENST00000553280 MUC5BQ9HC84 5762 aaPredicted RBP0.53□□□□□ -2.32
SCFD1-209ENST00000553280 LAMC1P11047 1609 aa0.53□□□□□ -2.32
SCFD1-209ENST00000553280 KDM5AP29375 1690 aaKnown RBP0.53□□□□□ -2.32
SCFD1-209ENST00000553280 PHGR1C9JFL3 82 aa0.53□□□□□ -2.32
SCFD1-209ENST00000553280 SNCAP37840 140 aa0.53□□□□□ -2.32
SCFD1-209ENST00000553280 NAV2Q8IVL1 2488 aa0.53□□□□□ -2.33
SCFD1-209ENST00000553280 MGPP08493 103 aa0.52□□□□□ -2.33
SCFD1-209ENST00000553280 COX6CP09669 75 aa0.52□□□□□ -2.33
SCFD1-209ENST00000553280 FAM223AQ8IWN6 122 aa0.52□□□□□ -2.33
SCFD1-209ENST00000553280 SHANK2Q9UPX8 1470 aa0.52□□□□□ -2.33
SCFD1-209ENST00000553280 ERCC6L2Q5T890 1561 aa0.52□□□□□ -2.33
SCFD1-209ENST00000553280 RAPGEF6Q8TEU7 1601 aa0.52□□□□□ -2.33
SCFD1-209ENST00000553280 F8P00451 2351 aa0.52□□□□□ -2.33
SCFD1-209ENST00000553280 BCE1O60756 84 aa0.51□□□□□ -2.33
SCFD1-209ENST00000553280 S100A3P33764 101 aa0.51□□□□□ -2.33
SCFD1-209ENST00000553280 WNK3Q9BYP7 1800 aa0.51□□□□□ -2.33
SCFD1-209ENST00000553280 FAIMQ9NVQ4 179 aa0.51□□□□□ -2.33
SCFD1-209ENST00000553280 PRO1854Q9UHT4 67 aa0.51□□□□□ -2.33
SCFD1-209ENST00000553280 SPCS1Q9Y6A9 102 aa0.51□□□□□ -2.33
SCFD1-209ENST00000553280 ARL2-SNX15V9GYD0 113 aa0.51□□□□□ -2.33
SCFD1-209ENST00000553280 ZFYVE26Q68DK2 2539 aa0.5□□□□□ -2.33
SCFD1-209ENST00000553280 SBF2Q86WG5 1849 aa0.5□□□□□ -2.33
SCFD1-209ENST00000553280 BIVM-ERCC5R4GMW8 1640 aa0.5□□□□□ -2.33
SCFD1-209ENST00000553280 TMEM218A2RU14 115 aa0.5□□□□□ -2.33
SCFD1-209ENST00000553280 CRYM-AS1A6NIL9 109 aa0.5□□□□□ -2.33
SCFD1-209ENST00000553280 ATP6V1G2-DDX39BF2Z307 99 aa0.5□□□□□ -2.33
SCFD1-209ENST00000553280 SPINK1P00995 79 aa0.5□□□□□ -2.33
SCFD1-209ENST00000553280 IGLC1P0CG04 106 aa0.5□□□□□ -2.33
SCFD1-209ENST00000553280 TOPAZ1Q8N9V7 1692 aa0.49□□□□□ -2.33
SCFD1-209ENST00000553280 KRTDAPP60985 99 aa0.49□□□□□ -2.33
SCFD1-209ENST00000553280 TOP2BQ02880 1626 aa0.49□□□□□ -2.33
SCFD1-209ENST00000553280 ABCC5O15440 1437 aa0.48□□□□□ -2.33
SCFD1-209ENST00000553280 RBP2P50120 134 aa0.48□□□□□ -2.33
SCFD1-209ENST00000553280 SPRR4Q96PI1 79 aa0.48□□□□□ -2.33
SCFD1-209ENST00000553280 NSD3Q9BZ95 1437 aa0.47□□□□□ -2.33
SCFD1-209ENST00000553280 TRAPPC2P0DI81 140 aa0.47□□□□□ -2.33
SCFD1-209ENST00000553280 TRAPPC2BP0DI82 140 aa0.47□□□□□ -2.33
SCFD1-209ENST00000553280 PLXNB2O15031 1838 aa0.47□□□□□ -2.33
SCFD1-209ENST00000553280 MRC2Q9UBG0 1479 aa0.47□□□□□ -2.33
SCFD1-209ENST00000553280 TRAV30A0A087WSZ9 112 aa0.46□□□□□ -2.34
SCFD1-209ENST00000553280 hADV29S1A0JD25 119 aa0.46□□□□□ -2.34
SCFD1-209ENST00000553280 TP53AIP1Q9HCN2 124 aa0.46□□□□□ -2.34
SCFD1-209ENST00000553280 MUC5ACP98088 5654 aa0.45□□□□□ -2.34
SCFD1-209ENST00000553280 CHD1O14646 1710 aa0.45□□□□□ -2.34
SCFD1-209ENST00000553280 TCHHQ07283 1943 aa0.45□□□□□ -2.34
SCFD1-209ENST00000553280 I3L2K1 104 aa0.45□□□□□ -2.34
SCFD1-209ENST00000553280 SFTA2Q6UW10 78 aa0.45□□□□□ -2.34
SCFD1-209ENST00000553280 TMEM263Q8WUH6 116 aaKnown RBP0.45□□□□□ -2.34
SCFD1-209ENST00000553280 CELSR2Q9HCU4 2923 aa0.45□□□□□ -2.34
SCFD1-209ENST00000553280 CNTLNQ9NXG0 1405 aa0.45□□□□□ -2.34
SCFD1-209ENST00000553280 ADGRL2O95490 1459 aa0.44□□□□□ -2.34
SCFD1-209ENST00000553280 SEC11AP67812 179 aa0.44□□□□□ -2.34
SCFD1-209ENST00000553280 Q8IZM0 81 aa0.44□□□□□ -2.34
SCFD1-209ENST00000553280 PTPRZ1P23471 2315 aaPredicted RBP0.44□□□□□ -2.34
SCFD1-209ENST00000553280 SPTBN2O15020 2390 aa0.43□□□□□ -2.34
SCFD1-209ENST00000553280 SCN7AQ01118 1682 aa0.43□□□□□ -2.34
SCFD1-209ENST00000553280 C10orf142B7Z368 130 aa0.43□□□□□ -2.34
SCFD1-209ENST00000553280 M0R3E3 92 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms