RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 MAP1LC3AQ9H492 121 aa9.31□□□□□ -0.92
PTCH1-226ENST00000553011 PGPEP1Q9NXJ5 209 aa9.31□□□□□ -0.92
PTCH1-226ENST00000553011 KIAA1109Q2LD37 5005 aa9.31□□□□□ -0.92
PTCH1-226ENST00000553011 LRP1BQ9NZR2 4599 aa9.3□□□□□ -0.92
PTCH1-226ENST00000553011 PRSS47A8MTI9 375 aa9.3□□□□□ -0.92
PTCH1-226ENST00000553011 TRAV8-4A0A0B4J246 113 aa9.29□□□□□ -0.92
PTCH1-226ENST00000553011 RPL39P62891 51 aaKnown RBP9.29□□□□□ -0.92
PTCH1-226ENST00000553011 COX19Q49B96 90 aa9.29□□□□□ -0.92
PTCH1-226ENST00000553011 CDPF1Q6NVV7 123 aa9.29□□□□□ -0.92
PTCH1-226ENST00000553011 UBE2D4Q9Y2X8 147 aa9.29□□□□□ -0.92
PTCH1-226ENST00000553011 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.28□□□□□ -0.92
PTCH1-226ENST00000553011 RAB5AP20339 215 aa9.28□□□□□ -0.92
PTCH1-226ENST00000553011 DGAT2L7PQ6IED9 249 aa9.28□□□□□ -0.92
PTCH1-226ENST00000553011 Q8N8P6 123 aa9.28□□□□□ -0.92
PTCH1-226ENST00000553011 CDC42SE2Q9NRR3 84 aa9.28□□□□□ -0.92
PTCH1-226ENST00000553011 IGLV5-52A0A0A0MRZ9 124 aa9.27□□□□□ -0.93
PTCH1-226ENST00000553011 USP17L23D6RBM5 183 aa9.27□□□□□ -0.93
PTCH1-226ENST00000553011 RNASE13Q5GAN3 156 aaKnown RBP9.27□□□□□ -0.93
PTCH1-226ENST00000553011 ZNF664Q8N3J9 261 aa9.27□□□□□ -0.93
PTCH1-226ENST00000553011 NTN5Q8WTR8 489 aaPredicted RBP9.27□□□□□ -0.93
PTCH1-226ENST00000553011 TMEM18Q96B42 140 aa9.27□□□□□ -0.93
PTCH1-226ENST00000553011 MRPL18Q9H0U6 180 aaKnown RBP9.27□□□□□ -0.93
PTCH1-226ENST00000553011 GAGE12HA6NDE8 117 aa9.26□□□□□ -0.93
PTCH1-226ENST00000553011 MT-ND6P03923 174 aa9.26□□□□□ -0.93
PTCH1-226ENST00000553011 SMAGPQ0VAQ4 97 aa9.26□□□□□ -0.93
PTCH1-226ENST00000553011 FABP9Q0Z7S8 132 aa9.26□□□□□ -0.93
PTCH1-226ENST00000553011 Q6ZUT4 128 aa9.26□□□□□ -0.93
PTCH1-226ENST00000553011 CHCHD10Q8WYQ3 142 aaPredicted RBP9.26□□□□□ -0.93
PTCH1-226ENST00000553011 TIMM21Q9BVV7 248 aa9.26□□□□□ -0.93
PTCH1-226ENST00000553011 CSDC2Q9Y534 153 aaKnown RBP9.26□□□□□ -0.93
PTCH1-226ENST00000553011 IFI27P40305 119 aaPredicted RBP9.25□□□□□ -0.93
PTCH1-226ENST00000553011 KRTAP10-1P60331 282 aa9.25□□□□□ -0.93
PTCH1-226ENST00000553011 YPEL4Q96NS1 127 aa9.25□□□□□ -0.93
PTCH1-226ENST00000553011 ALKBH7Q9BT30 221 aaPredicted RBP9.25□□□□□ -0.93
PTCH1-226ENST00000553011 LINC00959A0A1B0GUT2 108 aa9.24□□□□□ -0.93
PTCH1-226ENST00000553011 GCSHP23434 173 aa9.24□□□□□ -0.93
PTCH1-226ENST00000553011 CBLN2Q8IUK8 224 aa9.24□□□□□ -0.93
PTCH1-226ENST00000553011 FAM104AQ969W3 186 aa9.24□□□□□ -0.93
PTCH1-226ENST00000553011 OPRPNQ99935 248 aaPredicted RBP9.24□□□□□ -0.93
PTCH1-226ENST00000553011 NXT2Q9NPJ8 142 aaKnown RBP9.24□□□□□ -0.93
PTCH1-226ENST00000553011 CCL25O15444 150 aa9.23□□□□□ -0.93
PTCH1-226ENST00000553011 PRSS1P07477 247 aa9.23□□□□□ -0.93
PTCH1-226ENST00000553011 XCL1P47992 114 aa9.23□□□□□ -0.93
PTCH1-226ENST00000553011 C14orf177Q52M58 125 aa9.23□□□□□ -0.93
PTCH1-226ENST00000553011 SPANXA1Q9NS26 97 aa9.23□□□□□ -0.93
PTCH1-226ENST00000553011 TRAPPC1Q9Y5R8 145 aa9.23□□□□□ -0.93
PTCH1-226ENST00000553011 FOXI1Q12951 378 aa9.22□□□□□ -0.93
PTCH1-226ENST00000553011 SS18Q15532 418 aa9.22□□□□□ -0.93
PTCH1-226ENST00000553011 ORMDL2Q53FV1 153 aa9.22□□□□□ -0.93
PTCH1-226ENST00000553011 RYR1P21817 5038 aa9.22□□□□□ -0.93
PTCH1-226ENST00000553011 TRAV13-1A0A0B4J241 112 aa9.21□□□□□ -0.94
PTCH1-226ENST00000553011 LINC01620Q4KN68 170 aa9.21□□□□□ -0.94
PTCH1-226ENST00000553011 C2orf66Q6UXQ4 117 aa9.21□□□□□ -0.94
PTCH1-226ENST00000553011 PRSS3P2Q8NHM4 247 aa9.21□□□□□ -0.94
PTCH1-226ENST00000553011 SMCO4Q9NRQ5 59 aa9.21□□□□□ -0.94
PTCH1-226ENST00000553011 HERC2O95714 4834 aa9.21□□□□□ -0.94
PTCH1-226ENST00000553011 APOBP04114 4563 aaKnown RBP9.21□□□□□ -0.94
PTCH1-226ENST00000553011 K7EMI3 77 aa9.2□□□□□ -0.94
PTCH1-226ENST00000553011 CDK2AP2O75956 126 aa9.2□□□□□ -0.94
PTCH1-226ENST00000553011 MRPS36P82909 103 aaKnown RBP9.2□□□□□ -0.94
PTCH1-226ENST00000553011 CYSLTR1Q9Y271 337 aa9.2□□□□□ -0.94
PTCH1-226ENST00000553011 PYGO1Q9Y3Y4 419 aa9.2□□□□□ -0.94
PTCH1-226ENST00000553011 IGLV4-3A0A075B6K6 122 aa9.19□□□□□ -0.94
PTCH1-226ENST00000553011 hDV102S1A0JD36 115 aa9.19□□□□□ -0.94
PTCH1-226ENST00000553011 C1orf196B1AJZ1 125 aa9.19□□□□□ -0.94
PTCH1-226ENST00000553011 C15orf56Q8N910 161 aa9.19□□□□□ -0.94
PTCH1-226ENST00000553011 CD164L2Q6UWJ8 174 aa9.18□□□□□ -0.94
PTCH1-226ENST00000553011 LINC01546A6NGU7 62 aa9.17□□□□□ -0.94
PTCH1-226ENST00000553011 IFITM10A6NMD0 228 aa9.17□□□□□ -0.94
PTCH1-226ENST00000553011 HIGD2BQ4VC39 106 aa9.17□□□□□ -0.94
PTCH1-226ENST00000553011 CFAP161Q6P656 301 aa9.17□□□□□ -0.94
PTCH1-226ENST00000553011 C18orf32Q8TCD1 76 aa9.17□□□□□ -0.94
PTCH1-226ENST00000553011 TMEM141Q96I45 108 aa9.17□□□□□ -0.94
PTCH1-226ENST00000553011 ZC2HC1BQ5TFG8 222 aa9.16□□□□□ -0.94
PTCH1-226ENST00000553011 FA2HQ7L5A8 372 aa9.16□□□□□ -0.94
PTCH1-226ENST00000553011 FAM30AQ9NZY2 134 aa9.16□□□□□ -0.94
PTCH1-226ENST00000553011 HSPG2P98160 4391 aa9.15□□□□□ -0.94
PTCH1-226ENST00000553011 IGIPA6NJ69 53 aa9.15□□□□□ -0.94
PTCH1-226ENST00000553011 SLPIP03973 132 aa9.15□□□□□ -0.94
PTCH1-226ENST00000553011 XGP55808 180 aa9.15□□□□□ -0.94
PTCH1-226ENST00000553011 HAMPP81172 84 aa9.15□□□□□ -0.94
PTCH1-226ENST00000553011 TOMM6Q96B49 74 aa9.15□□□□□ -0.94
PTCH1-226ENST00000553011 URB1-AS1Q96HZ7 61 aa9.15□□□□□ -0.94
PTCH1-226ENST00000553011 DNAH8Q96JB1 4490 aa9.15□□□□□ -0.95
PTCH1-226ENST00000553011 GVQW2A0A096LPI5 108 aaPredicted RBP9.14□□□□□ -0.95
PTCH1-226ENST00000553011 IGHV1-58A0A0C4DH39 117 aa9.14□□□□□ -0.95
PTCH1-226ENST00000553011 G0S2P27469 103 aa9.14□□□□□ -0.95
PTCH1-226ENST00000553011 LINC00173Q6ZV60 143 aa9.14□□□□□ -0.95
PTCH1-226ENST00000553011 C5orf38Q86SI9 138 aa9.14□□□□□ -0.95
PTCH1-226ENST00000553011 KRTAP17-1Q9BYP8 105 aa9.14□□□□□ -0.95
PTCH1-226ENST00000553011 AP5S1Q9NUS5 200 aa9.14□□□□□ -0.95
PTCH1-226ENST00000553011 COX7A2LO14548 114 aa9.13□□□□□ -0.95
PTCH1-226ENST00000553011 CNBPP62633 177 aaKnown RBP9.13□□□□□ -0.95
PTCH1-226ENST00000553011 Q6ZN92 141 aa9.13□□□□□ -0.95
PTCH1-226ENST00000553011 TEX43Q6ZNM6 134 aa9.13□□□□□ -0.95
PTCH1-226ENST00000553011 C9orf163Q8N9P6 203 aa9.13□□□□□ -0.95
PTCH1-226ENST00000553011 LINC00526Q96FQ7 95 aa9.13□□□□□ -0.95
PTCH1-226ENST00000553011 AMELXQ99217 191 aa9.13□□□□□ -0.95
PTCH1-226ENST00000553011 NPSP0C0P6 89 aa9.12□□□□□ -0.95
PTCH1-226ENST00000553011 MALP21145 153 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms