RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CITED2Q99967 270 aaPredicted RBP3.55□□□□□ -1.84
LIMA1-214ENST00000552783 ZNF469Q96JG9 3925 aaPredicted RBP3.55□□□□□ -1.84
LIMA1-214ENST00000552783 IGKV3OR2-268A0A0C4DH90 116 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 LOC107984640A0A0U1RRK4 108 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 RBMY1A1P0DJD3 496 aaKnown RBP3.55□□□□□ -1.84
LIMA1-214ENST00000552783 RBMY1CP0DJD4 496 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 RBMY1FQ15415 496 aaKnown RBP3.55□□□□□ -1.84
LIMA1-214ENST00000552783 ZNF625Q96I27 306 aaPredicted RBP3.55□□□□□ -1.84
LIMA1-214ENST00000552783 C9orf85Q96MD7 179 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 LINC01600Q96MT4 127 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 TIMM21Q9BVV7 248 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 NDUFA12Q9UI09 145 aa3.55□□□□□ -1.84
LIMA1-214ENST00000552783 FLNAP21333 2647 aaKnown RBP3.54□□□□□ -1.84
LIMA1-214ENST00000552783 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.54□□□□□ -1.84
LIMA1-214ENST00000552783 IGHV3-38A0A0C4DH36 116 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 FAM236AA0A1B0GUQ0 79 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 FAM236BA0A1B0GV22 79 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 LST1O00453 97 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 TMEM61Q8N0U2 210 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 UBE2E2Q96LR5 201 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 C22orf24Q9Y442 160 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.54□□□□□ -1.84
LIMA1-214ENST00000552783 IGKV2-29A2NJV5 120 aaPredicted RBP3.54□□□□□ -1.84
LIMA1-214ENST00000552783 CD28P10747 220 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 CYSTM1Q9H1C7 97 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 TNFRSF18Q9Y5U5 241 aa3.54□□□□□ -1.84
LIMA1-214ENST00000552783 A0A0J9YX75 114 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 NDUFA7O95182 113 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 IGHV3-53P01767 116 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 SLURP1P55000 103 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 MRPS36P82909 103 aaKnown RBP3.53□□□□□ -1.84
LIMA1-214ENST00000552783 VPREB3Q9UKI3 123 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 HOXD3P31249 432 aaPredicted RBP3.53□□□□□ -1.84
LIMA1-214ENST00000552783 COX6A2Q02221 97 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 MIAQ16674 131 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 VSIG2Q96IQ7 327 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 XCL2Q9UBD3 114 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 IGHV1-58A0A0C4DH39 117 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 A6NDX4 124 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 LINC00694P0DN24 101 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 SOSTDC1Q6X4U4 206 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 FAM218AQ96MZ4 157 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 CDKN2A-AS1Q9UH64 79 aa3.53□□□□□ -1.84
LIMA1-214ENST00000552783 IGHV1OR15-1A0A075B7D0 117 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 RS1O15537 224 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 RHOHQ15669 191 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 DEFB121Q5J5C9 76 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 C9orf129Q5T035 196 aaKnown RBP3.52□□□□□ -1.85
LIMA1-214ENST00000552783 LINC01356Q8N9X3 169 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 HECTD1Q9ULT8 2610 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 TRBV7-7A0A0K0K1E9 115 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 H3BT86 120 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 SPANXDQ9BXN6 97 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 SPANXCQ9NY87 97 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 ITPR3Q14573 2671 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 SETXQ7Z333 2677 aaKnown RBP3.52□□□□□ -1.85
LIMA1-214ENST00000552783 MRPL23Q16540 153 aaKnown RBP3.52□□□□□ -1.85
LIMA1-214ENST00000552783 LINC00467Q9BRT7 94 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 CHCHD7Q9BUK0 85 aa3.52□□□□□ -1.85
LIMA1-214ENST00000552783 NBEAL2Q6ZNJ1 2754 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 TMEM101Q96IK0 257 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 DAZ2Q13117 558 aaKnown RBP3.51□□□□□ -1.85
LIMA1-214ENST00000552783 C18orf65Q6ZTR6 163 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 DAZ4Q86SG3 579 aaKnown RBP3.51□□□□□ -1.85
LIMA1-214ENST00000552783 DAZ3Q9NR90 486 aaKnown RBP3.51□□□□□ -1.85
LIMA1-214ENST00000552783 UBE2D4Q9Y2X8 147 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 TRGV1A0A0A0MS02 117 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 FAM240AA0A1B0GVK7 77 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 CFHR3Q02985 330 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 BEAN1Q3B7T3 259 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 Q96MF0 132 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 PRORYQ9H606 182 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 Q9HAA7 133 aa3.51□□□□□ -1.85
LIMA1-214ENST00000552783 USP24Q9UPU5 2620 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 COX6CP09669 75 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 LINC00308Q8TCZ7 52 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 KMT2BQ9UMN6 2715 aaPredicted RBP3.5□□□□□ -1.85
LIMA1-214ENST00000552783 APCP25054 2843 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 H3BUA1 57 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 PIK3CD-AS1Q5SR53 167 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 STHQ8IWL8 128 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 Q9H8V8 135 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 PYGO1Q9Y3Y4 419 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 TRAV13-1A0A0B4J241 112 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 TINCRA0A1B0GVN0 87 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 IGLV1-40P01703 118 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 HIST2H2BCQ6DN03 193 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 TOMM7Q9P0U1 55 aa3.5□□□□□ -1.85
LIMA1-214ENST00000552783 RBMY1BA6NDE4 496 aaKnown RBP3.49□□□□□ -1.85
LIMA1-214ENST00000552783 RBMY1EA6NEQ0 496 aaKnown RBP3.49□□□□□ -1.85
LIMA1-214ENST00000552783 RBMY1DP0C7P1 496 aaKnown RBP3.49□□□□□ -1.85
LIMA1-214ENST00000552783 RPL35AP18077 110 aaKnown RBP3.49□□□□□ -1.85
LIMA1-214ENST00000552783 TIRAPP58753 221 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 HERVK_113P63121 156 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 C9orf153Q5TBE3 101 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 PEMTQ9UBM1 199 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 TRGV2A0A075B6R0 118 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 PSMB8P28062 276 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 KRTAP10-9P60411 292 aa3.49□□□□□ -1.85
LIMA1-214ENST00000552783 C2orf48Q96LS8 159 aa3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms