RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 RGPD2P0DJD1 1756 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 DOCK1Q14185 1865 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 MPDZO75970 2070 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 MDC1Q14676 2089 aaKnown RBP1.29□□□□□ -2.2
LIMA1-207ENST00000551486 DOCK9Q9BZ29 2069 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 IGLV10-54A0A075B6I4 117 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 A0A096LNJ9 63 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 IGHV3-64DA0A0J9YX35 117 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 A0A0J9YY99 117 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 TRBV6-5A0A0K0K1A5 114 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 PANO1I0J062 215 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 FREM3P0C091 2139 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 LYZP61626 148 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 FXYD3Q14802 87 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 Q1RN00 199 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 MYO7BQ6PIF6 2116 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.29□□□□□ -2.2
LIMA1-207ENST00000551486 ZGRF1Q86YA3 2104 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 C16orf74Q96GX8 76 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 MRPL36Q9P0J6 103 aaKnown RBP1.29□□□□□ -2.2
LIMA1-207ENST00000551486 ZNRD1Q9P1U0 126 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 SLIT2O94813 1529 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 PREX1Q8TCU6 1659 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 RGPD1P0DJD0 1748 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 ITSN1Q15811 1721 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 RGPD4Q7Z3J3 1758 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 TSC2P49815 1807 aa1.29□□□□□ -2.2
LIMA1-207ENST00000551486 LRP4O75096 1905 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 BAZ2BQ9UIF8 2168 aaKnown RBP1.28□□□□□ -2.2
LIMA1-207ENST00000551486 UBR4Q5T4S7 5183 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 BAHCC1Q9P281 2608 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 IGLV2-18A0A075B6J9 118 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 TRAV21A0A0B4J279 112 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 ODF3BA8MYP8 253 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 I3L3M4 83 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 M0R135 149 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 IGHV3-53P01767 116 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 PRB2P02812 416 aaPredicted RBP1.28□□□□□ -2.2
LIMA1-207ENST00000551486 P0C879 139 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 KRTAP25-1Q3LHN0 102 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 KRTAP5-7Q6L8G8 165 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 KRTAP26-1Q6PEX3 210 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 RPS27LQ71UM5 84 aaKnown RBP1.28□□□□□ -2.2
LIMA1-207ENST00000551486 KRTAP11-1Q8IUC1 163 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 HIGD2AQ9BW72 106 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 KLK12Q9UKR0 248 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 LHFPL6Q9Y693 200 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 LINC01558Q9Y6Z2 57 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 ADGRB2O60241 1585 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 AHDC1Q5TGY3 1603 aaPredicted RBP1.28□□□□□ -2.2
LIMA1-207ENST00000551486 PHRF1Q9P1Y6 1649 aaKnown RBP1.28□□□□□ -2.2
LIMA1-207ENST00000551486 ALS2Q96Q42 1657 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 ARFGEF2Q9Y6D5 1785 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 NUP98P52948 1817 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 ZNF236Q9UL36 1845 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 MGAMO43451 1857 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 PDCD11Q14690 1871 aaKnown RBP1.28□□□□□ -2.2
LIMA1-207ENST00000551486 TRPM7Q96QT4 1865 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 SCN3AQ9NY46 2000 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 MYOFQ9NZM1 2061 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 HEATR1Q9H583 2144 aaKnown RBP1.28□□□□□ -2.2
LIMA1-207ENST00000551486 ATRXP46100 2492 aa1.28□□□□□ -2.2
LIMA1-207ENST00000551486 MAST4O15021 2626 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 MYO7AQ13402 2215 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 NACAE9PAV3 2078 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 PTPRBP23467 1997 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 RGPD3A6NKT7 1758 aaPredicted RBP1.27□□□□□ -2.21
LIMA1-207ENST00000551486 UBR2Q8IWV8 1755 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 KIDINS220Q9ULH0 1771 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 USP54Q70EL1 1684 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 KDM6BO15054 1643 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 CICQ96RK0 1608 aaPredicted RBP1.27□□□□□ -2.21
LIMA1-207ENST00000551486 IGHV3-64A0A075B6Q5 118 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 A0A0J9YX75 114 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 HIGD1CA8MV81 97 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 F8VRH5 84 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 H3BQ85 93 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 M0R1W7 72 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 NDUFA3O95167 84 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 DNAL4O96015 105 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 IGLV3-19P01714 112 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 RNASE3P12724 160 aaKnown RBP1.27□□□□□ -2.21
LIMA1-207ENST00000551486 PLNP26678 52 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 SPINK7P58062 85 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 ELOF1P60002 83 aaKnown RBP1.27□□□□□ -2.21
LIMA1-207ENST00000551486 CNBPP62633 177 aaKnown RBP1.27□□□□□ -2.21
LIMA1-207ENST00000551486 NREPQ16612 68 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 SPANXN5Q5MJ07 72 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 C14orf178Q8N769 122 aaPredicted RBP1.27□□□□□ -2.21
LIMA1-207ENST00000551486 SPANXA2-OT1Q8N9U9 137 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 OBSCN-AS1Q96MR7 158 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 TTTY12Q9BZ98 90 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 PLAC8Q9NZF1 115 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 TMEM14AQ9Y6G1 99 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 LCTP09848 1927 aa1.27□□□□□ -2.21
LIMA1-207ENST00000551486 RAI1Q7Z5J4 1906 aaPredicted RBP1.27□□□□□ -2.21
LIMA1-207ENST00000551486 STRCP1A6NGW2 1772 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 KIF21BO75037 1637 aa1.26□□□□□ -2.21
LIMA1-207ENST00000551486 COL16A1Q07092 1604 aaPredicted RBP1.26□□□□□ -2.21
LIMA1-207ENST00000551486 MAP3K4Q9Y6R4 1608 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms