RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 Q6ZUT4 128 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 DNAH10Q8IVF4 4471 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 IGKV3OR2-268A0A0C4DH90 116 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST1H2BKO60814 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST1H2BJP06899 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST1H2BOP23527 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST1H2BBP33778 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST1H2BDP58876 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST1H2BCP62807 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 PMCHL1Q16048 86 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST2H2BEQ16778 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.2□□□□□ -0.14
VPS29-206ENST00000549578 ZNF664Q8N3J9 261 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST1H2BHQ93079 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST1H2BNQ99877 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 HIST1H2BMQ99879 126 aa14.2□□□□□ -0.14
VPS29-206ENST00000549578 OPRPNQ99935 248 aaPredicted RBP14.2□□□□□ -0.14
VPS29-206ENST00000549578 G0S2P27469 103 aa14.19□□□□□ -0.14
VPS29-206ENST00000549578 FAM104AQ969W3 186 aa14.19□□□□□ -0.14
VPS29-206ENST00000549578 TOMM6Q96B49 74 aa14.19□□□□□ -0.14
VPS29-206ENST00000549578 A0A096LNJ9 63 aa14.18□□□□□ -0.14
VPS29-206ENST00000549578 RTL8CO15255 209 aa14.18□□□□□ -0.14
VPS29-206ENST00000549578 NFE4Q86UQ8 179 aa14.18□□□□□ -0.14
VPS29-206ENST00000549578 CHCHD1Q96BP2 118 aaKnown RBP14.18□□□□□ -0.14
VPS29-206ENST00000549578 LINC00310P59036 64 aa14.17□□□□□ -0.14
VPS29-206ENST00000549578 Q6ZRN7 208 aaPredicted RBP14.17□□□□□ -0.14
VPS29-206ENST00000549578 PYGO1Q9Y3Y4 419 aa14.17□□□□□ -0.14
VPS29-206ENST00000549578 SERF1AO75920 110 aa14.16□□□□□ -0.14
VPS29-206ENST00000549578 MIAQ16674 131 aa14.16□□□□□ -0.14
VPS29-206ENST00000549578 FRAS1Q86XX4 4008 aa14.16□□□□□ -0.14
VPS29-206ENST00000549578 IGLV10-54A0A075B6I4 117 aa14.15□□□□□ -0.14
VPS29-206ENST00000549578 IGLV4-3A0A075B6K6 122 aa14.15□□□□□ -0.14
VPS29-206ENST00000549578 IGKV2D-24A0A075B6R9 120 aa14.15□□□□□ -0.14
VPS29-206ENST00000549578 IGIPA6NJ69 53 aa14.15□□□□□ -0.14
VPS29-206ENST00000549578 C1orf196B1AJZ1 125 aa14.15□□□□□ -0.14
VPS29-206ENST00000549578 HBDP02042 147 aa14.15□□□□□ -0.14
VPS29-206ENST00000549578 MRPS36P82909 103 aaKnown RBP14.15□□□□□ -0.14
VPS29-206ENST00000549578 SCGB3A1Q96QR1 104 aa14.15□□□□□ -0.14
VPS29-206ENST00000549578 HSBP1O75506 76 aa14.14□□□□□ -0.15
VPS29-206ENST00000549578 C1orf43Q9BWL3 253 aa14.14□□□□□ -0.15
VPS29-206ENST00000549578 NUPR1O60356 82 aa14.13□□□□□ -0.15
VPS29-206ENST00000549578 RMI2Q96E14 147 aa14.13□□□□□ -0.15
VPS29-206ENST00000549578 TMEM141Q96I45 108 aa14.13□□□□□ -0.15
VPS29-206ENST00000549578 ERASQ7Z444 233 aa14.12□□□□□ -0.15
VPS29-206ENST00000549578 TIMM17AQ99595 171 aa14.12□□□□□ -0.15
VPS29-206ENST00000549578 DNAH17Q9UFH2 4485 aa14.12□□□□□ -0.15
VPS29-206ENST00000549578 LINC00959A0A1B0GUT2 108 aa14.11□□□□□ -0.15
VPS29-206ENST00000549578 LINC01549A6NIU2 74 aa14.11□□□□□ -0.15
VPS29-206ENST00000549578 PSCAO43653 123 aa14.11□□□□□ -0.15
VPS29-206ENST00000549578 ZC2HC1BQ5TFG8 222 aa14.11□□□□□ -0.15
VPS29-206ENST00000549578 FAM19A2Q8N3H0 131 aa14.11□□□□□ -0.15
VPS29-206ENST00000549578 TM2D2Q9BX73 214 aa14.11□□□□□ -0.15
VPS29-206ENST00000549578 TRAV8-4A0A0B4J246 113 aa14.1□□□□□ -0.15
VPS29-206ENST00000549578 TRAV13-1A0A0B4J241 112 aa14.1□□□□□ -0.15
VPS29-206ENST00000549578 KRTAP26-1Q6PEX3 210 aa14.1□□□□□ -0.15
VPS29-206ENST00000549578 Q6ZN92 141 aa14.1□□□□□ -0.15
VPS29-206ENST00000549578 IFITM10A6NMD0 228 aa14.09□□□□□ -0.15
VPS29-206ENST00000549578 NPSP0C0P6 89 aa14.09□□□□□ -0.15
VPS29-206ENST00000549578 TNP2Q05952 138 aa14.09□□□□□ -0.15
VPS29-206ENST00000549578 PDZD11Q5EBL8 140 aa14.09□□□□□ -0.15
VPS29-206ENST00000549578 TEX43Q6ZNM6 134 aa14.09□□□□□ -0.15
VPS29-206ENST00000549578 LINC00173Q6ZV60 143 aa14.09□□□□□ -0.15
VPS29-206ENST00000549578 MAPKAPK5-AS1Q8N8E1 139 aa14.09□□□□□ -0.15
VPS29-206ENST00000549578 COX11Q9Y6N1 276 aa14.09□□□□□ -0.15
VPS29-206ENST00000549578 CHCHD10Q8WYQ3 142 aaPredicted RBP14.08□□□□□ -0.16
VPS29-206ENST00000549578 VCX2Q9H322 139 aa14.08□□□□□ -0.16
VPS29-206ENST00000549578 CCL25O15444 150 aa14.07□□□□□ -0.16
VPS29-206ENST00000549578 SS18Q15532 418 aa14.07□□□□□ -0.16
VPS29-206ENST00000549578 AMELXQ99217 191 aa14.07□□□□□ -0.16
VPS29-206ENST00000549578 FAT2Q9NYQ8 4349 aa14.07□□□□□ -0.16
VPS29-206ENST00000549578 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.06□□□□□ -0.16
VPS29-206ENST00000549578 XCL1P47992 114 aa14.06□□□□□ -0.16
VPS29-206ENST00000549578 NDUFA6P56556 154 aa14.06□□□□□ -0.16
VPS29-206ENST00000549578 PAPPA-AS1Q5QFB9 102 aa14.06□□□□□ -0.16
VPS29-206ENST00000549578 GAGE12HA6NDE8 117 aa14.05□□□□□ -0.16
VPS29-206ENST00000549578 PRSS29PA6NIE9 313 aa14.05□□□□□ -0.16
VPS29-206ENST00000549578 LINC00336Q6ZUF6 198 aa14.05□□□□□ -0.16
VPS29-206ENST00000549578 C2orf88Q9BSF0 95 aa14.05□□□□□ -0.16
VPS29-206ENST00000549578 BAALCQ8WXS3 180 aa14.05□□□□□ -0.16
VPS29-206ENST00000549578 COA6Q5JTJ3 125 aaKnown RBP14.04□□□□□ -0.16
VPS29-206ENST00000549578 LECT2O14960 151 aa14.03□□□□□ -0.16
VPS29-206ENST00000549578 ATP5LO75964 103 aa14.03□□□□□ -0.16
VPS29-206ENST00000549578 LRCOL1A6NCL2 159 aa14.02□□□□□ -0.16
VPS29-206ENST00000549578 UBE2D1P51668 147 aa14.02□□□□□ -0.16
VPS29-206ENST00000549578 FOXI1Q12951 378 aa14.02□□□□□ -0.16
VPS29-206ENST00000549578 WFDC2Q14508 124 aa14.02□□□□□ -0.16
VPS29-206ENST00000549578 LCE2DQ5TA82 110 aaPredicted RBP14.01□□□□□ -0.17
VPS29-206ENST00000549578 A0A087WTM6 91 aa14□□□□□ -0.17
VPS29-206ENST00000549578 LEPROTL1O95214 131 aa14□□□□□ -0.17
VPS29-206ENST00000549578 CD164L2Q6UWJ8 174 aa14□□□□□ -0.17
VPS29-206ENST00000549578 IFI27L1Q96BM0 104 aa14□□□□□ -0.17
VPS29-206ENST00000549578 CST9LQ9H4G1 147 aa14□□□□□ -0.17
VPS29-206ENST00000549578 FABP4P15090 132 aa14□□□□□ -0.17
VPS29-206ENST00000549578 PMVKQ15126 192 aa14□□□□□ -0.17
VPS29-206ENST00000549578 LINC00242Q5T6M2 205 aa14□□□□□ -0.17
VPS29-206ENST00000549578 USP17L23D6RBM5 183 aa13.97□□□□□ -0.17
VPS29-206ENST00000549578 PRSS1P07477 247 aa13.97□□□□□ -0.17
VPS29-206ENST00000549578 COX6A2Q02221 97 aa13.97□□□□□ -0.17
VPS29-206ENST00000549578 A0A0J9YXV3 536 aa13.96□□□□□ -0.17
VPS29-206ENST00000549578 C5orf38Q86SI9 138 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms