RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 IGLV7-43P04211 117 aa7.68□□□□□ -1.18
SCAF11-208ENST00000546534 BCL2P10415 239 aa7.68□□□□□ -1.18
SCAF11-208ENST00000546534 DEFA1P59665 94 aa7.68□□□□□ -1.18
SCAF11-208ENST00000546534 RPS20P60866 119 aaKnown RBP7.68□□□□□ -1.18
SCAF11-208ENST00000546534 LYZL1Q6UWQ5 148 aa7.68□□□□□ -1.18
SCAF11-208ENST00000546534 GATD1Q8NB37 220 aa7.68□□□□□ -1.18
SCAF11-208ENST00000546534 IGLV4-69A0A075B6H9 119 aa7.67□□□□□ -1.18
SCAF11-208ENST00000546534 IGLV1-50A0A075B6I6 118 aa7.67□□□□□ -1.18
SCAF11-208ENST00000546534 A0A1B0GV50 99 aa7.67□□□□□ -1.18
SCAF11-208ENST00000546534 H0Y9J4 135 aa7.67□□□□□ -1.18
SCAF11-208ENST00000546534 PFDN1O60925 122 aa7.67□□□□□ -1.18
SCAF11-208ENST00000546534 NCR2O95944 276 aa7.67□□□□□ -1.18
SCAF11-208ENST00000546534 APCSP02743 223 aa7.67□□□□□ -1.18
SCAF11-208ENST00000546534 RPL35P42766 123 aaKnown RBP7.67□□□□□ -1.18
SCAF11-208ENST00000546534 SFT2D1Q8WV19 159 aa7.67□□□□□ -1.18
SCAF11-208ENST00000546534 C19orf71A6NCJ1 209 aa7.66□□□□□ -1.18
SCAF11-208ENST00000546534 KRTAP1-4P0C5Y4 121 aa7.66□□□□□ -1.18
SCAF11-208ENST00000546534 ZNF25P17030 456 aaPredicted RBP7.66□□□□□ -1.18
SCAF11-208ENST00000546534 CD164L2Q6UWJ8 174 aa7.66□□□□□ -1.18
SCAF11-208ENST00000546534 NUP35Q8NFH5 326 aa7.66□□□□□ -1.18
SCAF11-208ENST00000546534 ISOC2Q96AB3 205 aa7.66□□□□□ -1.18
SCAF11-208ENST00000546534 RPL39LQ96EH5 51 aaKnown RBP7.66□□□□□ -1.18
SCAF11-208ENST00000546534 KRTAP3-1Q9BYR8 98 aa7.66□□□□□ -1.18
SCAF11-208ENST00000546534 CYTL1Q9NRR1 136 aa7.66□□□□□ -1.18
SCAF11-208ENST00000546534 B5MCH6 92 aa7.65□□□□□ -1.18
SCAF11-208ENST00000546534 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.65□□□□□ -1.18
SCAF11-208ENST00000546534 APOMO95445 188 aa7.65□□□□□ -1.18
SCAF11-208ENST00000546534 GIPP09681 153 aaPredicted RBP7.65□□□□□ -1.18
SCAF11-208ENST00000546534 MEF2BQ02080 365 aaPredicted RBP7.65□□□□□ -1.18
SCAF11-208ENST00000546534 SS18Q15532 418 aa7.65□□□□□ -1.18
SCAF11-208ENST00000546534 KRTAP11-1Q8IUC1 163 aa7.65□□□□□ -1.18
SCAF11-208ENST00000546534 MBD3L1Q8WWY6 194 aa7.65□□□□□ -1.18
SCAF11-208ENST00000546534 TMEM101Q96IK0 257 aa7.65□□□□□ -1.18
SCAF11-208ENST00000546534 BTF3L4Q96K17 158 aa7.65□□□□□ -1.18
SCAF11-208ENST00000546534 A0A087WZ39 114 aa7.64□□□□□ -1.19
SCAF11-208ENST00000546534 XKRY2A2RUG3 117 aa7.64□□□□□ -1.19
SCAF11-208ENST00000546534 IFNA1P01562 189 aa7.64□□□□□ -1.19
SCAF11-208ENST00000546534 EIF5AP63241 154 aaKnown RBP7.64□□□□□ -1.19
SCAF11-208ENST00000546534 RPL18AQ02543 176 aaKnown RBP7.64□□□□□ -1.19
SCAF11-208ENST00000546534 KCNRGQ8N5I3 272 aa7.64□□□□□ -1.19
SCAF11-208ENST00000546534 FAM213BQ8TBF2 198 aa7.64□□□□□ -1.19
SCAF11-208ENST00000546534 SDHAF1A6NFY7 115 aa7.63□□□□□ -1.19
SCAF11-208ENST00000546534 CENPWQ5EE01 88 aa7.63□□□□□ -1.19
SCAF11-208ENST00000546534 C9orf62Q8N4C0 152 aa7.63□□□□□ -1.19
SCAF11-208ENST00000546534 CAMK2N2Q96S95 79 aa7.63□□□□□ -1.19
SCAF11-208ENST00000546534 KRTAP23-1A1A580 65 aa7.62□□□□□ -1.19
SCAF11-208ENST00000546534 MALP21145 153 aa7.62□□□□□ -1.19
SCAF11-208ENST00000546534 UBE2D1P51668 147 aa7.62□□□□□ -1.19
SCAF11-208ENST00000546534 TWIST1Q15672 202 aa7.62□□□□□ -1.19
SCAF11-208ENST00000546534 KRTAP5-3Q6L8H2 238 aa7.62□□□□□ -1.19
SCAF11-208ENST00000546534 C11orf52Q96A22 123 aa7.62□□□□□ -1.19
SCAF11-208ENST00000546534 OPRPNQ99935 248 aaPredicted RBP7.62□□□□□ -1.19
SCAF11-208ENST00000546534 TRAV1-1A0A0B4J248 108 aa7.61□□□□□ -1.19
SCAF11-208ENST00000546534 BCL2L11O43521 198 aa7.61□□□□□ -1.19
SCAF11-208ENST00000546534 ESDP10768 282 aa7.61□□□□□ -1.19
SCAF11-208ENST00000546534 PMCHP20382 165 aa7.61□□□□□ -1.19
SCAF11-208ENST00000546534 CTRLP40313 264 aa7.61□□□□□ -1.19
SCAF11-208ENST00000546534 EIF5AL1Q6IS14 154 aaKnown RBP7.61□□□□□ -1.19
SCAF11-208ENST00000546534 CDC42SE2Q9NRR3 84 aa7.61□□□□□ -1.19
SCAF11-208ENST00000546534 RAB19A4D1S5 217 aa7.6□□□□□ -1.19
SCAF11-208ENST00000546534 I3L3M4 83 aa7.6□□□□□ -1.19
SCAF11-208ENST00000546534 COX7A2LO14548 114 aa7.6□□□□□ -1.19
SCAF11-208ENST00000546534 RPL13AP40429 203 aaKnown RBP7.6□□□□□ -1.19
SCAF11-208ENST00000546534 FOXA3P55318 350 aaPredicted RBP7.6□□□□□ -1.19
SCAF11-208ENST00000546534 C2orf48Q96LS8 159 aa7.6□□□□□ -1.19
SCAF11-208ENST00000546534 CNFNQ9BYD5 112 aa7.6□□□□□ -1.19
SCAF11-208ENST00000546534 FAM168BA1KXE4 195 aa7.59□□□□□ -1.19
SCAF11-208ENST00000546534 G3V3Q6 166 aa7.59□□□□□ -1.19
SCAF11-208ENST00000546534 ARPC5O15511 151 aa7.59□□□□□ -1.19
SCAF11-208ENST00000546534 TSHBP01222 138 aa7.59□□□□□ -1.19
SCAF11-208ENST00000546534 MRPL52Q86TS9 123 aaKnown RBP7.59□□□□□ -1.19
SCAF11-208ENST00000546534 UMAD1C9J7I0 102 aa7.58□□□□□ -1.2
SCAF11-208ENST00000546534 TSPAN13O95857 204 aa7.58□□□□□ -1.2
SCAF11-208ENST00000546534 GNG4P50150 75 aa7.58□□□□□ -1.2
SCAF11-208ENST00000546534 CCL20P78556 96 aa7.58□□□□□ -1.2
SCAF11-208ENST00000546534 TSKUQ8WUA8 353 aa7.58□□□□□ -1.2
SCAF11-208ENST00000546534 SMIM12Q96EX1 92 aa7.58□□□□□ -1.2
SCAF11-208ENST00000546534 MRAP2Q96G30 205 aa7.58□□□□□ -1.2
SCAF11-208ENST00000546534 TMEM242Q9NWH2 141 aa7.58□□□□□ -1.2
SCAF11-208ENST00000546534 TRBV20OR9-2A0A075B6H5 130 aa7.57□□□□□ -1.2
SCAF11-208ENST00000546534 C1orf196B1AJZ1 125 aa7.57□□□□□ -1.2
SCAF11-208ENST00000546534 TEX261Q6UWH6 196 aa7.57□□□□□ -1.2
SCAF11-208ENST00000546534 C5orf38Q86SI9 138 aa7.57□□□□□ -1.2
SCAF11-208ENST00000546534 GNG13Q9P2W3 67 aa7.57□□□□□ -1.2
SCAF11-208ENST00000546534 TRBV6-5A0A0K0K1A5 114 aa7.56□□□□□ -1.2
SCAF11-208ENST00000546534 FAM19A5Q7Z5A7 132 aaPredicted RBP7.56□□□□□ -1.2
SCAF11-208ENST00000546534 MANBALQ9NQG1 85 aa7.56□□□□□ -1.2
SCAF11-208ENST00000546534 SPAG11BQ08648 103 aa7.55□□□□□ -1.2
SCAF11-208ENST00000546534 RNASE13Q5GAN3 156 aaKnown RBP7.55□□□□□ -1.2
SCAF11-208ENST00000546534 SMIM15Q7Z3B0 74 aa7.55□□□□□ -1.2
SCAF11-208ENST00000546534 RNASE7Q9H1E1 156 aaKnown RBP7.55□□□□□ -1.2
SCAF11-208ENST00000546534 BIN3Q9NQY0 253 aa7.55□□□□□ -1.2
SCAF11-208ENST00000546534 CARHSP1Q9Y2V2 147 aaKnown RBP7.55□□□□□ -1.2
SCAF11-208ENST00000546534 TRAV13-1A0A0B4J241 112 aa7.54□□□□□ -1.2
SCAF11-208ENST00000546534 KRTAP7-1Q8IUC3 87 aa7.54□□□□□ -1.2
SCAF11-208ENST00000546534 RPP21Q9H633 154 aaKnown RBP7.54□□□□□ -1.2
SCAF11-208ENST00000546534 ST20Q9HBF5 79 aa7.54□□□□□ -1.2
SCAF11-208ENST00000546534 C7orf77A4D0Y5 90 aa7.53□□□□□ -1.2
SCAF11-208ENST00000546534 UBE2BP63146 152 aa7.53□□□□□ -1.2
SCAF11-208ENST00000546534 FAM210AQ96ND0 272 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms