RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 RPL39P62891 51 aaKnown RBP4.4□□□□□ -1.71
SYNE1-239ENST00000545694 TAL2Q16559 108 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 KRTAP15-1Q3LI76 137 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 NEGR1Q7Z3B1 354 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 SH2D6Q7Z4S9 175 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 STPG4Q8N801 248 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 SLC25A29Q8N8R3 303 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 OR11H2Q8NH07 326 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 ZNRF2Q8NHG8 242 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 RNF183Q96D59 192 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 ZNF479Q96JC4 524 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 DNAH3Q8TD57 4116 aa4.4□□□□□ -1.71
SYNE1-239ENST00000545694 IGLV4-3A0A075B6K6 122 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE12BA1L429 117 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE7O76087 117 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 PRM2P04554 102 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE12FP0CL80 117 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE12GP0CL81 117 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE12IP0CL82 117 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 NMUP48645 174 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 HSD52Q0P140 79 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 DGAT2L7PQ6IED9 249 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 FAM19A3Q7Z5A8 133 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 LURAP1LQ8IV03 231 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 CHCHD7Q9BUK0 85 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 PRO0255Q9UI72 69 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 UBE2D4Q9Y2X8 147 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 PKD1L1Q8TDX9 2849 aa4.39□□□□□ -1.71
SYNE1-239ENST00000545694 ANK2Q01484 3957 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 IGLV4-69A0A075B6H9 119 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 TRBV25-1A0A075B6N4 114 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 TINCRA0A1B0GVN0 87 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 A6NDN8 102 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 LINC00694P0DN24 101 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 IGHV4-30-4P0DP06 118 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 TIRAPP58753 221 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 PLEKHB2Q96CS7 222 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 TMEM101Q96IK0 257 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 TMEM243Q9BU79 118 aa4.38□□□□□ -1.71
SYNE1-239ENST00000545694 TRAV26-1A0A087WT03 109 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 MYMXA0A1B0GTQ4 84 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 H3BRM9 83 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 UBE2L6O14933 153 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 CCL25O15444 150 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 SPART-AS1P0CW21 52 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 BVES-AS1Q5T3Y7 98 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 C2orf91Q6ZV80 131 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 SBSPONQ8IVN8 264 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 CHAC1Q9BUX1 264 aa4.37□□□□□ -1.71
SYNE1-239ENST00000545694 NBEAL1Q6ZS30 2694 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 TRBV6-8A0A0A6YYG3 113 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE12JA6NER3 117 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 LEPROTO15243 131 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 ATP5G1P05496 136 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 DEFB130BP0DP73 79 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 DEFB130AP0DP74 79 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 HINT1P49773 126 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-239ENST00000545694 DAD1P61803 113 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 HERVK_113P63121 156 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE1Q13065 139 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE4Q13068 117 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE5Q13069 117 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 DEFB135Q30KP9 77 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 GAGE13Q4V321 117 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 MPV17L2Q567V2 206 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 TMEM170BQ5T4T1 132 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 FAM222AQ5U5X8 452 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 PCP2Q8IVA1 136 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 Q8NAQ8 132 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 OR5A1Q8NGJ0 315 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 ORAOV1Q8WV07 137 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 PHLDA1Q8WV24 401 aaPredicted RBP4.36□□□□□ -1.71
SYNE1-239ENST00000545694 C11orf68Q9H3H3 251 aaKnown RBP4.36□□□□□ -1.71
SYNE1-239ENST00000545694 NOTCH1P46531 2555 aa4.36□□□□□ -1.71
SYNE1-239ENST00000545694 FBN1P35555 2871 aaKnown RBP4.35□□□□□ -1.71
SYNE1-239ENST00000545694 IGLV5-45A0A087WSX0 123 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 IGKV2D-26A0A0A0MRZ7 120 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 TRAV8-6A0A0B4J262 113 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 IGHV4-28A0A0C4DH34 117 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 A0A1B0GUV1 79 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 TMEM223A0PJW6 202 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 H3BNG1 76 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 ZNF22P17026 224 aaPredicted RBP4.35□□□□□ -1.71
SYNE1-239ENST00000545694 LGALS3P17931 250 aaKnown RBP4.35□□□□□ -1.71
SYNE1-239ENST00000545694 UBE2D1P51668 147 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 EMP1P54849 157 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 BATFQ16520 125 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 AMMECR1LQ6DCA0 310 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 Q6ZVH6 145 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 PRIMA1Q86XR5 153 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 ATP6V0E2Q8NHE4 81 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 SPATA3Q8NHX4 192 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 TM2D2Q9BX73 214 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 GEMIN7Q9H840 131 aaKnown RBP4.35□□□□□ -1.71
SYNE1-239ENST00000545694 CDC42SE2Q9NRR3 84 aa4.35□□□□□ -1.71
SYNE1-239ENST00000545694 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.34□□□□□ -1.71
SYNE1-239ENST00000545694 IGHV3-38A0A0C4DH36 116 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 IGHV1-58A0A0C4DH39 117 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 A0A0J9YXV3 536 aa4.34□□□□□ -1.71
SYNE1-239ENST00000545694 IGKV2-29A2NJV5 120 aaPredicted RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 176.5 ms