RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C11orf21Q9P2W6 132 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 PYGO1Q9Y3Y4 419 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 NF1P21359 2839 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 TRAV21A0A0B4J279 112 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 PRYO14603 147 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 AVPP01185 164 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 CCL3L1P16619 93 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 RNASE4P34096 147 aaKnown RBP3.9□□□□□ -1.79
USP28-213ENST00000544967 MIAQ16674 131 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 LCE2DQ5TA82 110 aaPredicted RBP3.9□□□□□ -1.79
USP28-213ENST00000544967 MINOS1Q5TGZ0 78 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 DPH3Q96FX2 82 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 FAM19A4Q96LR4 140 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 ZNRD1Q9P1U0 126 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 KIF25-AS1Q9Y6Z4 181 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 MINOS1-NBL1R4GNA1 71 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 U3KQE9 123 aa3.9□□□□□ -1.79
USP28-213ENST00000544967 FLNAP21333 2647 aaKnown RBP3.9□□□□□ -1.79
USP28-213ENST00000544967 PSMB8P28062 276 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 Q1RN00 199 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 Q6JHZ5 121 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 ZANQ9Y493 2812 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 BUB3O43684 328 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 NDUFC2O95298 119 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 RPL18AQ02543 176 aaKnown RBP3.89□□□□□ -1.79
USP28-213ENST00000544967 TMEM61Q8N0U2 210 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 SERP2Q8N6R1 65 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 UPK3BQ9BT76 320 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 LINC00527Q9UJ94 153 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 TRAV26-2A0A0B4J265 109 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 GYPEP15421 78 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 Q6YL49 198 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 Q8N6K4 173 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 C3orf56Q8N813 242 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 TIMM21Q9BVV7 248 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 TNCP24821 2201 aa3.89□□□□□ -1.79
USP28-213ENST00000544967 MXRA5Q9NR99 2828 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 COX7A2LO14548 114 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 AKAP6Q13023 2319 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 CTSGP08311 255 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 LINC00315P59091 139 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 C16orf95Q9H693 158 aa3.88□□□□□ -1.79
USP28-213ENST00000544967 IGHV3-21A0A0B4J1V1 117 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 RNASE1P07998 156 aaKnown RBP3.87□□□□□ -1.79
USP28-213ENST00000544967 MRPS36P82909 103 aaKnown RBP3.87□□□□□ -1.79
USP28-213ENST00000544967 ATP5EP2Q5VTU8 51 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 SFTA2Q6UW10 78 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 VMO1Q7Z5L0 202 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 C14orf178Q8N769 122 aaPredicted RBP3.87□□□□□ -1.79
USP28-213ENST00000544967 SPATA3Q8NHX4 192 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 TRBV7-1A0A0A6YYK4 115 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 IGHV1-58A0A0C4DH39 117 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 I3L3M4 83 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 BEAN1Q3B7T3 259 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 Q5XG85 94 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 MED13LQ71F56 2210 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 MALRD1Q5VYJ5 2156 aa3.87□□□□□ -1.79
USP28-213ENST00000544967 POLQO75417 2590 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 PRAC2D3DTV9 90 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 PMAIP1Q13794 54 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 SMCR5Q8TEV8 140 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 RPL39LQ96EH5 51 aaKnown RBP3.86□□□□□ -1.79
USP28-213ENST00000544967 SMR3AQ99954 134 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 PHLDA3Q9Y5J5 127 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 MAP1AP78559 2803 aaPredicted RBP3.86□□□□□ -1.79
USP28-213ENST00000544967 RNF182Q8N6D2 247 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 ZFAND2AQ8N6M9 145 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 OBSCN-AS1Q96MR7 158 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 APOC4P55056 127 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 CEMP1Q6PRD7 247 aaPredicted RBP3.86□□□□□ -1.79
USP28-213ENST00000544967 PRIMA1Q86XR5 153 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 EEF1AKMT3Q96AZ1 226 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 KLK15Q9H2R5 256 aa3.86□□□□□ -1.79
USP28-213ENST00000544967 TRBV10-3A0A0K0K1G6 114 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 A6NDX4 124 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 IGHV4-38-2P0DP08 117 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 S100A7L2Q5SY68 101 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 LINC00482Q8N8I6 264 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 C20orf203Q8NBC4 194 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 MDFIQ99750 246 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 JPT2Q9H910 190 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 FAM19A3Q7Z5A8 133 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 VSIG2Q96IQ7 327 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 IGLV5-45A0A087WSX0 123 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 CLPSL1A2RUU4 121 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 INAFM1C9JVW0 142 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 NDUFA1O15239 70 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 IGHV3-30-3P0DP02 117 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 RNASE3P12724 160 aaKnown RBP3.85□□□□□ -1.79
USP28-213ENST00000544967 DPM3Q9P2X0 92 aa3.85□□□□□ -1.79
USP28-213ENST00000544967 PIK3CD-AS1Q5SR53 167 aa3.84□□□□□ -1.79
USP28-213ENST00000544967 ESM1Q9NQ30 184 aa3.84□□□□□ -1.79
USP28-213ENST00000544967 IGLV4-3A0A075B6K6 122 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 IGHV3-72A0A0B4J1Y9 119 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 TRAV13-1A0A0B4J241 112 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 S100A4P26447 101 aaKnown RBP3.84□□□□□ -1.8
USP28-213ENST00000544967 SUMO4Q6EEV6 95 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 SERP1Q9Y6X1 66 aa3.84□□□□□ -1.8
USP28-213ENST00000544967 IGHV3OR16-10A0A075B7F0 116 aa3.83□□□□□ -1.8
USP28-213ENST00000544967 SOCS3O14543 225 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms