RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 A4D1N5 150 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 RPL36AP83881 106 aaKnown RBP12.89□□□□□ -0.35
VIM-209ENST00000544301 SFTA2Q6UW10 78 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 MUSTN1Q8IVN3 82 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 ARL17AQ8IVW1 177 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 RPL36ALQ969Q0 106 aaKnown RBP12.89□□□□□ -0.35
VIM-209ENST00000544301 VSIG2Q96IQ7 327 aa12.89□□□□□ -0.35
VIM-209ENST00000544301 PRO1854Q9UHT4 67 aa12.88□□□□□ -0.35
VIM-209ENST00000544301 PLAC8L1A1L4L8 177 aa12.88□□□□□ -0.35
VIM-209ENST00000544301 SPINK8P0C7L1 97 aa12.88□□□□□ -0.35
VIM-209ENST00000544301 DGAT2L7PQ6IED9 249 aa12.88□□□□□ -0.35
VIM-209ENST00000544301 MTURNQ8N3F0 131 aa12.88□□□□□ -0.35
VIM-209ENST00000544301 GEMIN7Q9H840 131 aaKnown RBP12.88□□□□□ -0.35
VIM-209ENST00000544301 C16orf74Q96GX8 76 aa12.87□□□□□ -0.35
VIM-209ENST00000544301 SMR3AQ99954 134 aa12.87□□□□□ -0.35
VIM-209ENST00000544301 EIF4EBP3O60516 100 aaPredicted RBP12.86□□□□□ -0.35
VIM-209ENST00000544301 DAZ4Q86SG3 579 aaKnown RBP12.86□□□□□ -0.35
VIM-209ENST00000544301 CSNK1G2-AS1Q8NCQ2 148 aa12.86□□□□□ -0.35
VIM-209ENST00000544301 LITAFQ99732 161 aa12.86□□□□□ -0.35
VIM-209ENST00000544301 DAZ3Q9NR90 486 aaKnown RBP12.86□□□□□ -0.35
VIM-209ENST00000544301 NDUFA12Q9UI09 145 aa12.86□□□□□ -0.35
VIM-209ENST00000544301 A8MZ25 164 aa12.86□□□□□ -0.35
VIM-209ENST00000544301 LINC00694P0DN24 101 aa12.86□□□□□ -0.35
VIM-209ENST00000544301 PSMB2P49721 201 aa12.86□□□□□ -0.35
VIM-209ENST00000544301 TIRAPP58753 221 aa12.86□□□□□ -0.35
VIM-209ENST00000544301 NTM-AS1Q6ZSK4 140 aa12.86□□□□□ -0.35
VIM-209ENST00000544301 SH2D6Q7Z4S9 175 aa12.85□□□□□ -0.35
VIM-209ENST00000544301 IGLV5-45A0A087WSX0 123 aa12.85□□□□□ -0.35
VIM-209ENST00000544301 GAGE12JA6NER3 117 aa12.85□□□□□ -0.35
VIM-209ENST00000544301 GAGE4Q13068 117 aa12.85□□□□□ -0.35
VIM-209ENST00000544301 GAGE5Q13069 117 aa12.85□□□□□ -0.35
VIM-209ENST00000544301 C1QTNF4Q9BXJ3 329 aa12.85□□□□□ -0.35
VIM-209ENST00000544301 CDKN2A-AS1Q9UH64 79 aa12.85□□□□□ -0.35
VIM-209ENST00000544301 ETDBQ3ZM63 59 aa12.84□□□□□ -0.35
VIM-209ENST00000544301 LYRM7Q5U5X0 104 aa12.84□□□□□ -0.35
VIM-209ENST00000544301 GAGE7O76087 117 aa12.83□□□□□ -0.35
VIM-209ENST00000544301 GAGE12FP0CL80 117 aa12.83□□□□□ -0.35
VIM-209ENST00000544301 GAGE12GP0CL81 117 aa12.83□□□□□ -0.35
VIM-209ENST00000544301 GAGE12IP0CL82 117 aa12.83□□□□□ -0.35
VIM-209ENST00000544301 KRTAP10-3P60369 221 aa12.83□□□□□ -0.35
VIM-209ENST00000544301 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.83□□□□□ -0.35
VIM-209ENST00000544301 A0A0B4J2C4 111 aa12.83□□□□□ -0.36
VIM-209ENST00000544301 COX6A2Q02221 97 aa12.83□□□□□ -0.36
VIM-209ENST00000544301 SBSPONQ8IVN8 264 aa12.83□□□□□ -0.36
VIM-209ENST00000544301 NOTCH3Q9UM47 2321 aa12.82□□□□□ -0.36
VIM-209ENST00000544301 IGHV3-33P01772 117 aa12.82□□□□□ -0.36
VIM-209ENST00000544301 ADAMTSL4-AS1Q5T5F5 129 aa12.82□□□□□ -0.36
VIM-209ENST00000544301 ZFAND6Q6FIF0 208 aa12.82□□□□□ -0.36
VIM-209ENST00000544301 OVOL2Q9BRP0 275 aa12.82□□□□□ -0.36
VIM-209ENST00000544301 CSDC2Q9Y534 153 aaKnown RBP12.82□□□□□ -0.36
VIM-209ENST00000544301 FASNP49327 2511 aaKnown RBP12.82□□□□□ -0.36
VIM-209ENST00000544301 TRGV2A0A075B6R0 118 aa12.82□□□□□ -0.36
VIM-209ENST00000544301 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.82□□□□□ -0.36
VIM-209ENST00000544301 SPANXDQ9BXN6 97 aa12.82□□□□□ -0.36
VIM-209ENST00000544301 SPANXCQ9NY87 97 aa12.82□□□□□ -0.36
VIM-209ENST00000544301 TCL1BO95988 128 aa12.81□□□□□ -0.36
VIM-209ENST00000544301 LINC00242Q5T6M2 205 aa12.81□□□□□ -0.36
VIM-209ENST00000544301 TMEM101Q96IK0 257 aa12.81□□□□□ -0.36
VIM-209ENST00000544301 SMCPP49901 116 aaPredicted RBP12.8□□□□□ -0.36
VIM-209ENST00000544301 TRBV20-1A0A075B6N2 111 aa12.8□□□□□ -0.36
VIM-209ENST00000544301 HERVK_113P63121 156 aa12.8□□□□□ -0.36
VIM-209ENST00000544301 FAM19A3Q7Z5A8 133 aa12.8□□□□□ -0.36
VIM-209ENST00000544301 HIVEP2P31629 2446 aa12.79□□□□□ -0.36
VIM-209ENST00000544301 PRSS2P07478 247 aa12.79□□□□□ -0.36
VIM-209ENST00000544301 ERG28Q9UKR5 140 aa12.79□□□□□ -0.36
VIM-209ENST00000544301 CIDEAO60543 219 aa12.79□□□□□ -0.36
VIM-209ENST00000544301 MIAQ16674 131 aa12.79□□□□□ -0.36
VIM-209ENST00000544301 GTSF1LQ9H1H1 148 aa12.79□□□□□ -0.36
VIM-209ENST00000544301 LOC100131303A0A0U1RQF7 123 aa12.78□□□□□ -0.36
VIM-209ENST00000544301 TRBV6-4A0A1B0GX49 114 aa12.78□□□□□ -0.36
VIM-209ENST00000544301 SCGB1C2P0DMR2 95 aa12.78□□□□□ -0.36
VIM-209ENST00000544301 CDC42SE2Q9NRR3 84 aa12.78□□□□□ -0.36
VIM-209ENST00000544301 LY6G6DO95868 133 aa12.77□□□□□ -0.36
VIM-209ENST00000544301 IGLV5-39A0A0G2JS06 123 aa12.77□□□□□ -0.37
VIM-209ENST00000544301 H7C2G1 150 aa12.77□□□□□ -0.37
VIM-209ENST00000544301 NDUFA1O15239 70 aa12.77□□□□□ -0.37
VIM-209ENST00000544301 PF4P02776 101 aa12.77□□□□□ -0.37
VIM-209ENST00000544301 LINC00482Q8N8I6 264 aa12.77□□□□□ -0.37
VIM-209ENST00000544301 GCN1Q92616 2671 aaKnown RBP12.76□□□□□ -0.37
VIM-209ENST00000544301 TRAV13-1A0A0B4J241 112 aa12.76□□□□□ -0.37
VIM-209ENST00000544301 TIMM17BO60830 172 aa12.76□□□□□ -0.37
VIM-209ENST00000544301 SMAGPQ0VAQ4 97 aa12.76□□□□□ -0.37
VIM-209ENST00000544301 TMEM243Q9BU79 118 aa12.76□□□□□ -0.37
VIM-209ENST00000544301 TRGV4A0A0C4DH28 118 aa12.76□□□□□ -0.37
VIM-209ENST00000544301 J3QR89 54 aa12.76□□□□□ -0.37
VIM-209ENST00000544301 UBE2L6O14933 153 aa12.74□□□□□ -0.37
VIM-209ENST00000544301 FHL2Q14192 279 aa12.74□□□□□ -0.37
VIM-209ENST00000544301 INSL3P51460 131 aa12.74□□□□□ -0.37
VIM-209ENST00000544301 SMIM1B2RUZ4 78 aa12.73□□□□□ -0.37
VIM-209ENST00000544301 NPC2P61916 151 aa12.73□□□□□ -0.37
VIM-209ENST00000544301 ATP6V0E2Q8NHE4 81 aa12.73□□□□□ -0.37
VIM-209ENST00000544301 C2CD3Q4AC94 2353 aa12.73□□□□□ -0.37
VIM-209ENST00000544301 Q1RN00 199 aa12.73□□□□□ -0.37
VIM-209ENST00000544301 RNF183Q96D59 192 aa12.72□□□□□ -0.37
VIM-209ENST00000544301 H7C423 109 aa12.71□□□□□ -0.37
VIM-209ENST00000544301 Q9H8V8 135 aa12.71□□□□□ -0.37
VIM-209ENST00000544301 HECTD1Q9ULT8 2610 aa12.71□□□□□ -0.37
VIM-209ENST00000544301 F5H768 121 aa12.71□□□□□ -0.38
VIM-209ENST00000544301 IFITM1P13164 125 aa12.71□□□□□ -0.38
VIM-209ENST00000544301 DAND5Q8N907 189 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms