RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 RPL39P62891 51 aaKnown RBP7.14□□□□□ -1.27
VPS33A-204ENST00000540669 MRPS36P82909 103 aaKnown RBP7.14□□□□□ -1.27
VPS33A-204ENST00000540669 C2orf66Q6UXQ4 117 aa7.14□□□□□ -1.27
VPS33A-204ENST00000540669 DEFB104AQ8WTQ1 72 aa7.14□□□□□ -1.27
VPS33A-204ENST00000540669 PACRGQ96M98 296 aaPredicted RBP7.14□□□□□ -1.27
VPS33A-204ENST00000540669 TIMM17AQ99595 171 aa7.14□□□□□ -1.27
VPS33A-204ENST00000540669 SPANXA1Q9NS26 97 aa7.14□□□□□ -1.27
VPS33A-204ENST00000540669 PRR34Q9NV39 138 aa7.14□□□□□ -1.27
VPS33A-204ENST00000540669 TRAV8-6A0A0B4J262 113 aa7.13□□□□□ -1.27
VPS33A-204ENST00000540669 SIVA1O15304 175 aa7.13□□□□□ -1.27
VPS33A-204ENST00000540669 HBDP02042 147 aa7.13□□□□□ -1.27
VPS33A-204ENST00000540669 RBX1P62877 108 aa7.13□□□□□ -1.27
VPS33A-204ENST00000540669 RNASEKQ6P5S7 137 aaKnown RBP7.13□□□□□ -1.27
VPS33A-204ENST00000540669 Q6ZR54 194 aa7.13□□□□□ -1.27
VPS33A-204ENST00000540669 LINC00173Q6ZV60 143 aa7.13□□□□□ -1.27
VPS33A-204ENST00000540669 BAGE3Q86Y29 109 aa7.13□□□□□ -1.27
VPS33A-204ENST00000540669 CYSLTR1Q9Y271 337 aa7.13□□□□□ -1.27
VPS33A-204ENST00000540669 IGLV4-60A0A075B6I1 120 aa7.12□□□□□ -1.27
VPS33A-204ENST00000540669 IGLV4-3A0A075B6K6 122 aa7.12□□□□□ -1.27
VPS33A-204ENST00000540669 LOC100996750A0A140TA64 210 aa7.12□□□□□ -1.27
VPS33A-204ENST00000540669 CHCHD5Q9BSY4 110 aa7.12□□□□□ -1.27
VPS33A-204ENST00000540669 KRTAP4-6Q9BYQ5 205 aa7.12□□□□□ -1.27
VPS33A-204ENST00000540669 C5orf52A6NGY3 159 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 HSBP1O75506 76 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 G0S2P27469 103 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 GAGE6Q13070 117 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 Q6ZUT4 128 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 ERASQ7Z444 233 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 Q8N976 141 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 AMELXQ99217 191 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 Q9H8V8 135 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 CDC42SE2Q9NRR3 84 aa7.11□□□□□ -1.27
VPS33A-204ENST00000540669 IFITM10A6NMD0 228 aa7.1□□□□□ -1.27
VPS33A-204ENST00000540669 PMCHL1Q16048 86 aa7.1□□□□□ -1.27
VPS33A-204ENST00000540669 KRTAP26-1Q6PEX3 210 aa7.1□□□□□ -1.27
VPS33A-204ENST00000540669 HIST3H2BBQ8N257 126 aa7.1□□□□□ -1.27
VPS33A-204ENST00000540669 TMEM18Q96B42 140 aa7.1□□□□□ -1.27
VPS33A-204ENST00000540669 NBDYA0A0U1RRE5 68 aa7.09□□□□□ -1.27
VPS33A-204ENST00000540669 IBA57-AS1B1ANH7 110 aa7.09□□□□□ -1.27
VPS33A-204ENST00000540669 BTF3P20290 206 aaKnown RBP7.09□□□□□ -1.27
VPS33A-204ENST00000540669 SMAGPQ0VAQ4 97 aa7.09□□□□□ -1.27
VPS33A-204ENST00000540669 TTC32Q5I0X7 151 aa7.09□□□□□ -1.27
VPS33A-204ENST00000540669 FAM19A3Q7Z5A8 133 aa7.09□□□□□ -1.27
VPS33A-204ENST00000540669 FAM19A2Q8N3H0 131 aa7.09□□□□□ -1.27
VPS33A-204ENST00000540669 TMEM141Q96I45 108 aa7.09□□□□□ -1.27
VPS33A-204ENST00000540669 HECTD4Q9Y4D8 3996 aa7.09□□□□□ -1.27
VPS33A-204ENST00000540669 UBE2L6O14933 153 aa7.08□□□□□ -1.28
VPS33A-204ENST00000540669 NDUFA6P56556 154 aa7.08□□□□□ -1.28
VPS33A-204ENST00000540669 ENHOQ6UWT2 76 aa7.08□□□□□ -1.28
VPS33A-204ENST00000540669 Q6ZRN7 208 aaPredicted RBP7.08□□□□□ -1.28
VPS33A-204ENST00000540669 C10orf126Q8N4M7 172 aa7.08□□□□□ -1.28
VPS33A-204ENST00000540669 OR5A1Q8NGJ0 315 aa7.08□□□□□ -1.28
VPS33A-204ENST00000540669 PKD1P98161 4303 aa7.08□□□□□ -1.28
VPS33A-204ENST00000540669 A0A087WX48 190 aa7.07□□□□□ -1.28
VPS33A-204ENST00000540669 ZNF664Q8N3J9 261 aa7.07□□□□□ -1.28
VPS33A-204ENST00000540669 BAALCQ8WXS3 180 aa7.07□□□□□ -1.28
VPS33A-204ENST00000540669 HIST1H2BLQ99880 126 aa7.07□□□□□ -1.28
VPS33A-204ENST00000540669 OPRPNQ99935 248 aaPredicted RBP7.07□□□□□ -1.28
VPS33A-204ENST00000540669 ATP5LO75964 103 aa7.06□□□□□ -1.28
VPS33A-204ENST00000540669 IGHV3-30P01768 117 aa7.06□□□□□ -1.28
VPS33A-204ENST00000540669 IGHV3-33P01772 117 aa7.06□□□□□ -1.28
VPS33A-204ENST00000540669 IGHV3-30-3P0DP02 117 aa7.06□□□□□ -1.28
VPS33A-204ENST00000540669 IGHV3-30-5P0DP03 117 aa7.06□□□□□ -1.28
VPS33A-204ENST00000540669 SPATA12Q7Z6I5 190 aa7.06□□□□□ -1.28
VPS33A-204ENST00000540669 SCGB3A1Q96QR1 104 aa7.06□□□□□ -1.28
VPS33A-204ENST00000540669 DNAH5Q8TE73 4624 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 TRAV9-2A0A087WT02 112 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 TRAV12-1A0A0B4J245 112 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 LEPROTL1O95214 131 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 UBE2D1P51668 147 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 REG3AQ06141 175 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 MIAQ16674 131 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 AMMECR1LQ6DCA0 310 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 LINC00336Q6ZUF6 198 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 LINC00269Q8N2A0 174 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 KLK12Q9UKR0 248 aa7.05□□□□□ -1.28
VPS33A-204ENST00000540669 IGLV4-69A0A075B6H9 119 aa7.04□□□□□ -1.28
VPS33A-204ENST00000540669 IGLV5-45A0A087WSX0 123 aa7.04□□□□□ -1.28
VPS33A-204ENST00000540669 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.04□□□□□ -1.28
VPS33A-204ENST00000540669 M0R2N4 97 aa7.04□□□□□ -1.28
VPS33A-204ENST00000540669 CCL25O15444 150 aa7.04□□□□□ -1.28
VPS33A-204ENST00000540669 ANGP03950 147 aaKnown RBP7.04□□□□□ -1.28
VPS33A-204ENST00000540669 SNRPEP62304 92 aaKnown RBP7.04□□□□□ -1.28
VPS33A-204ENST00000540669 PAPPA-AS1Q5QFB9 102 aa7.04□□□□□ -1.28
VPS33A-204ENST00000540669 IFI27L1Q96BM0 104 aa7.04□□□□□ -1.28
VPS33A-204ENST00000540669 TMEM101Q96IK0 257 aa7.04□□□□□ -1.28
VPS33A-204ENST00000540669 TRAV8-4A0A0B4J246 113 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 LINC00959A0A1B0GUT2 108 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 TMEM262E9PQX1 116 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 ODF1Q14990 250 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 PMVKQ15126 192 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 RNASE13Q5GAN3 156 aaKnown RBP7.03□□□□□ -1.28
VPS33A-204ENST00000540669 C1orf134Q5TEV5 83 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 ZC2HC1BQ5TFG8 222 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 NFE4Q86UQ8 179 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 CST9LQ9H4G1 147 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 HSPB8Q9UJY1 196 aa7.03□□□□□ -1.28
VPS33A-204ENST00000540669 TRAV8-3A0A0A6YYJ7 113 aa7.02□□□□□ -1.29
VPS33A-204ENST00000540669 IGHV3OR16-9A0A0B4J2B5 98 aa7.02□□□□□ -1.29
VPS33A-204ENST00000540669 S100A6P06703 90 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms