RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 DEFB4AO15263 64 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 COTL1Q14019 142 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 RHOHQ15669 191 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 ADAMTSL4-AS1Q5T5F5 129 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 TIMM21Q9BVV7 248 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 CDKN2A-AS1Q9UH64 79 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 TRGV2A0A075B6R0 118 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 Q1RN00 199 aa12.16□□□□□ -0.46
USP28-208ENST00000540438 FBN1P35555 2871 aaKnown RBP12.15□□□□□ -0.46
USP28-208ENST00000540438 A0A096LPF7 62 aa12.15□□□□□ -0.46
USP28-208ENST00000540438 NDUFA11Q86Y39 141 aa12.15□□□□□ -0.46
USP28-208ENST00000540438 DEFB130BP0DP73 79 aa12.14□□□□□ -0.47
USP28-208ENST00000540438 DEFB130AP0DP74 79 aa12.14□□□□□ -0.47
USP28-208ENST00000540438 RPL32P62910 135 aaKnown RBP12.14□□□□□ -0.47
USP28-208ENST00000540438 NOTCH1P46531 2555 aa12.14□□□□□ -0.47
USP28-208ENST00000540438 TAL2Q16559 108 aa12.14□□□□□ -0.47
USP28-208ENST00000540438 SLC25A29Q8N8R3 303 aa12.14□□□□□ -0.47
USP28-208ENST00000540438 GTSF1LQ9H1H1 148 aa12.14□□□□□ -0.47
USP28-208ENST00000540438 UBE2D4Q9Y2X8 147 aa12.14□□□□□ -0.47
USP28-208ENST00000540438 F8P00451 2351 aa12.14□□□□□ -0.47
USP28-208ENST00000540438 GEMIN7Q9H840 131 aaKnown RBP12.13□□□□□ -0.47
USP28-208ENST00000540438 G3V4G9 280 aa12.13□□□□□ -0.47
USP28-208ENST00000540438 GIG44P09565 113 aaPredicted RBP12.13□□□□□ -0.47
USP28-208ENST00000540438 PAPPA-AS1Q5QFB9 102 aa12.13□□□□□ -0.47
USP28-208ENST00000540438 MAST4O15021 2626 aa12.12□□□□□ -0.47
USP28-208ENST00000540438 A0A0J9YXY3 114 aa12.11□□□□□ -0.47
USP28-208ENST00000540438 TCL1BO95988 128 aa12.11□□□□□ -0.47
USP28-208ENST00000540438 NFE4Q86UQ8 179 aa12.11□□□□□ -0.47
USP28-208ENST00000540438 LEPROTO15243 131 aa12.11□□□□□ -0.47
USP28-208ENST00000540438 UBE2D1P51668 147 aa12.11□□□□□ -0.47
USP28-208ENST00000540438 NTM-AS1Q6ZSK4 140 aa12.11□□□□□ -0.47
USP28-208ENST00000540438 LINC00482Q8N8I6 264 aa12.11□□□□□ -0.47
USP28-208ENST00000540438 NDUFA12Q9UI09 145 aa12.11□□□□□ -0.47
USP28-208ENST00000540438 TSSC4Q9Y5U2 329 aaPredicted RBP12.11□□□□□ -0.47
USP28-208ENST00000540438 KRTAP10-3P60369 221 aa12.1□□□□□ -0.47
USP28-208ENST00000540438 TMEM238LA0A1B0GVL6 79 aa12.1□□□□□ -0.47
USP28-208ENST00000540438 A6NJY4 79 aa12.1□□□□□ -0.47
USP28-208ENST00000540438 J3QKU1 62 aa12.1□□□□□ -0.47
USP28-208ENST00000540438 SMCPP49901 116 aaPredicted RBP12.1□□□□□ -0.47
USP28-208ENST00000540438 SPANXB1Q9NS25 103 aaPredicted RBP12.1□□□□□ -0.47
USP28-208ENST00000540438 FHL3Q13643 280 aa12.08□□□□□ -0.47
USP28-208ENST00000540438 RS1O15537 224 aa12.07□□□□□ -0.48
USP28-208ENST00000540438 SMAGPQ0VAQ4 97 aa12.07□□□□□ -0.48
USP28-208ENST00000540438 GAGE6Q13070 117 aa12.07□□□□□ -0.48
USP28-208ENST00000540438 PRO1854Q9UHT4 67 aa12.07□□□□□ -0.48
USP28-208ENST00000540438 CLPSL2Q6UWE3 100 aa12.06□□□□□ -0.48
USP28-208ENST00000540438 C11orf68Q9H3H3 251 aaKnown RBP12.06□□□□□ -0.48
USP28-208ENST00000540438 PRO0461Q9UI25 63 aa12.06□□□□□ -0.48
USP28-208ENST00000540438 PF4P02776 101 aa12.05□□□□□ -0.48
USP28-208ENST00000540438 TRGV4A0A0C4DH28 118 aa12.05□□□□□ -0.48
USP28-208ENST00000540438 A8MTW9 85 aa12.05□□□□□ -0.48
USP28-208ENST00000540438 INAFM1C9JVW0 142 aa12.05□□□□□ -0.48
USP28-208ENST00000540438 MRPS36P82909 103 aaKnown RBP12.05□□□□□ -0.48
USP28-208ENST00000540438 TOMM7Q9P0U1 55 aa12.05□□□□□ -0.48
USP28-208ENST00000540438 RPL36AP83881 106 aaKnown RBP12.04□□□□□ -0.48
USP28-208ENST00000540438 RPL36ALQ969Q0 106 aaKnown RBP12.04□□□□□ -0.48
USP28-208ENST00000540438 TMEM101Q96IK0 257 aa12.04□□□□□ -0.48
USP28-208ENST00000540438 VSIG2Q96IQ7 327 aa12.04□□□□□ -0.48
USP28-208ENST00000540438 IGHV1-58A0A0C4DH39 117 aa12.03□□□□□ -0.48
USP28-208ENST00000540438 K7EQD1 137 aa12.03□□□□□ -0.48
USP28-208ENST00000540438 BEAN1Q3B7T3 259 aa12.03□□□□□ -0.48
USP28-208ENST00000540438 Q9H8V8 135 aa12.03□□□□□ -0.48
USP28-208ENST00000540438 C9JAW5 83 aa12.03□□□□□ -0.48
USP28-208ENST00000540438 F8W1H4 67 aa12.03□□□□□ -0.48
USP28-208ENST00000540438 LY6G6DO95868 133 aa12.03□□□□□ -0.48
USP28-208ENST00000540438 LINC00242Q5T6M2 205 aa12.02□□□□□ -0.49
USP28-208ENST00000540438 TMEM86BQ8N661 226 aa12.02□□□□□ -0.49
USP28-208ENST00000540438 NBEAL1Q6ZS30 2694 aa12.02□□□□□ -0.49
USP28-208ENST00000540438 CRLF1O75462 422 aa12.02□□□□□ -0.49
USP28-208ENST00000540438 TMEM263Q8WUH6 116 aaKnown RBP12.02□□□□□ -0.49
USP28-208ENST00000540438 ERG28Q9UKR5 140 aa12.02□□□□□ -0.49
USP28-208ENST00000540438 PLAC8L1A1L4L8 177 aa12.01□□□□□ -0.49
USP28-208ENST00000540438 RNASE1P07998 156 aaKnown RBP12.01□□□□□ -0.49
USP28-208ENST00000540438 PYGO1Q9Y3Y4 419 aa12.01□□□□□ -0.49
USP28-208ENST00000540438 CLEC2BQ92478 149 aa12.01□□□□□ -0.49
USP28-208ENST00000540438 LITAFQ99732 161 aa12.01□□□□□ -0.49
USP28-208ENST00000540438 C19orf73Q9NVV2 129 aa12.01□□□□□ -0.49
USP28-208ENST00000540438 CIDEAO60543 219 aa12□□□□□ -0.49
USP28-208ENST00000540438 IGHV3-33P01772 117 aa12□□□□□ -0.49
USP28-208ENST00000540438 IGLV1-51P01701 117 aa12□□□□□ -0.49
USP28-208ENST00000540438 TMEM238C9JI98 176 aa12□□□□□ -0.49
USP28-208ENST00000540438 UBE2L6O14933 153 aa12□□□□□ -0.49
USP28-208ENST00000540438 CHCHD5Q9BSY4 110 aa11.99□□□□□ -0.49
USP28-208ENST00000540438 SPANXA1Q9NS26 97 aa11.99□□□□□ -0.49
USP28-208ENST00000540438 IGLV4-60A0A075B6I1 120 aa11.99□□□□□ -0.49
USP28-208ENST00000540438 TINCRA0A1B0GVN0 87 aa11.98□□□□□ -0.49
USP28-208ENST00000540438 UBE2D3P61077 147 aa11.98□□□□□ -0.49
USP28-208ENST00000540438 UBE2D2P62837 147 aa11.98□□□□□ -0.49
USP28-208ENST00000540438 TRIAP1O43715 76 aa11.97□□□□□ -0.49
USP28-208ENST00000540438 MEIG1Q5JSS6 88 aa11.97□□□□□ -0.49
USP28-208ENST00000540438 Q8N3U1 123 aa11.97□□□□□ -0.49
USP28-208ENST00000540438 PIK3CD-AS1Q5SR53 167 aa11.97□□□□□ -0.49
USP28-208ENST00000540438 GAGE12HA6NDE8 117 aa11.97□□□□□ -0.49
USP28-208ENST00000540438 TMEM262E9PQX1 116 aa11.97□□□□□ -0.49
USP28-208ENST00000540438 HILS1P60008 231 aa11.97□□□□□ -0.49
USP28-208ENST00000540438 C5orf38Q86SI9 138 aa11.96□□□□□ -0.49
USP28-208ENST00000540438 COL6A5A8TX70 2615 aa11.96□□□□□ -0.49
USP28-208ENST00000540438 TRAV25A0A0B4J276 109 aa11.96□□□□□ -0.5
USP28-208ENST00000540438 DEFB135Q30KP9 77 aa11.96□□□□□ -0.5
USP28-208ENST00000540438 PRIMA1Q86XR5 153 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms