RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 TCTE3Q8IZS6 198 aa4.86□□□□□ -1.63
CD44-232ENST00000531118 OR10AG1Q8NH19 301 aa4.86□□□□□ -1.63
CD44-232ENST00000531118 MBD3L1Q8WWY6 194 aa4.86□□□□□ -1.63
CD44-232ENST00000531118 LOC107984640A0A0U1RRK4 108 aa4.85□□□□□ -1.63
CD44-232ENST00000531118 PAGE4O60829 102 aa4.85□□□□□ -1.63
CD44-232ENST00000531118 CRIP1P50238 77 aa4.85□□□□□ -1.63
CD44-232ENST00000531118 TPRXLQ17RH7 258 aa4.85□□□□□ -1.63
CD44-232ENST00000531118 ZNF674Q2M3X9 581 aa4.85□□□□□ -1.63
CD44-232ENST00000531118 FAM162BQ5T6X4 162 aa4.85□□□□□ -1.63
CD44-232ENST00000531118 AKAP14Q86UN6 197 aa4.85□□□□□ -1.63
CD44-232ENST00000531118 MANBALQ9NQG1 85 aa4.85□□□□□ -1.63
CD44-232ENST00000531118 A0A1B0GV50 99 aa4.84□□□□□ -1.63
CD44-232ENST00000531118 UBE2L6O14933 153 aa4.84□□□□□ -1.63
CD44-232ENST00000531118 IFNA1P01562 189 aa4.84□□□□□ -1.63
CD44-232ENST00000531118 SYCNQ0VAF6 134 aa4.84□□□□□ -1.63
CD44-232ENST00000531118 COX8CQ7Z4L0 72 aa4.84□□□□□ -1.63
CD44-232ENST00000531118 SLC51BQ86UW2 128 aa4.84□□□□□ -1.63
CD44-232ENST00000531118 KRTAP11-1Q8IUC1 163 aa4.84□□□□□ -1.63
CD44-232ENST00000531118 RETNLBQ9BQ08 111 aa4.84□□□□□ -1.63
CD44-232ENST00000531118 IGHV1-58A0A0C4DH39 117 aa4.83□□□□□ -1.64
CD44-232ENST00000531118 LTAP01374 205 aa4.83□□□□□ -1.64
CD44-232ENST00000531118 BCL2P10415 239 aa4.83□□□□□ -1.64
CD44-232ENST00000531118 GNG13Q9P2W3 67 aa4.83□□□□□ -1.64
CD44-232ENST00000531118 CARHSP1Q9Y2V2 147 aaKnown RBP4.83□□□□□ -1.64
CD44-232ENST00000531118 PDE6DO43924 150 aa4.82□□□□□ -1.64
CD44-232ENST00000531118 FGF6P10767 208 aa4.82□□□□□ -1.64
CD44-232ENST00000531118 TAGLN2P37802 199 aaKnown RBP4.82□□□□□ -1.64
CD44-232ENST00000531118 CAMPP49913 170 aa4.82□□□□□ -1.64
CD44-232ENST00000531118 RPL18AQ02543 176 aaKnown RBP4.82□□□□□ -1.64
CD44-232ENST00000531118 BAGE2Q86Y30 109 aa4.82□□□□□ -1.64
CD44-232ENST00000531118 PGLYRP4Q96LB8 373 aa4.82□□□□□ -1.64
CD44-232ENST00000531118 AP1S3Q96PC3 154 aa4.82□□□□□ -1.64
CD44-232ENST00000531118 A0A087WZ39 114 aa4.81□□□□□ -1.64
CD44-232ENST00000531118 MUC21A0A140T8X8 626 aa4.81□□□□□ -1.64
CD44-232ENST00000531118 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.81□□□□□ -1.64
CD44-232ENST00000531118 SNAI2O43623 268 aa4.81□□□□□ -1.64
CD44-232ENST00000531118 MGPP08493 103 aa4.81□□□□□ -1.64
CD44-232ENST00000531118 CRYGAP11844 174 aa4.81□□□□□ -1.64
CD44-232ENST00000531118 NKX2-5P52952 324 aaPredicted RBP4.81□□□□□ -1.64
CD44-232ENST00000531118 MEF2BQ02080 365 aaPredicted RBP4.81□□□□□ -1.64
CD44-232ENST00000531118 RPP21Q9H633 154 aaKnown RBP4.81□□□□□ -1.64
CD44-232ENST00000531118 BIN3Q9NQY0 253 aa4.81□□□□□ -1.64
CD44-232ENST00000531118 SSPOA2VEC9 5147 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 M0QY20 66 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 PRYO14603 147 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 APOMO95445 188 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 CXCL1P09341 107 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 SMIM17P0DL12 118 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 RPL35P42766 123 aaKnown RBP4.8□□□□□ -1.64
CD44-232ENST00000531118 XCL1P47992 114 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 SPANXN1Q5VSR9 72 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 ISOC2Q96AB3 205 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 SMIM12Q96EX1 92 aa4.8□□□□□ -1.64
CD44-232ENST00000531118 XKRY2A2RUG3 117 aa4.79□□□□□ -1.64
CD44-232ENST00000531118 GNG4P50150 75 aa4.79□□□□□ -1.64
CD44-232ENST00000531118 RPS20P60866 119 aaKnown RBP4.79□□□□□ -1.64
CD44-232ENST00000531118 CCL20P78556 96 aa4.79□□□□□ -1.64
CD44-232ENST00000531118 COTL1Q14019 142 aa4.79□□□□□ -1.64
CD44-232ENST00000531118 NUP35Q8NFH5 326 aa4.79□□□□□ -1.64
CD44-232ENST00000531118 TSKUQ8WUA8 353 aa4.79□□□□□ -1.64
CD44-232ENST00000531118 C11orf52Q96A22 123 aa4.79□□□□□ -1.64
CD44-232ENST00000531118 KRTAP4-1Q9BYQ7 146 aa4.79□□□□□ -1.64
CD44-232ENST00000531118 MED9Q9NWA0 146 aa4.79□□□□□ -1.64
CD44-232ENST00000531118 IGLV4-69A0A075B6H9 119 aa4.78□□□□□ -1.64
CD44-232ENST00000531118 A0A087X002 238 aa4.78□□□□□ -1.64
CD44-232ENST00000531118 CCL25O15444 150 aa4.78□□□□□ -1.64
CD44-232ENST00000531118 TNFRSF6BO95407 300 aa4.78□□□□□ -1.64
CD44-232ENST00000531118 OR5AL1P0C617 328 aa4.78□□□□□ -1.64
CD44-232ENST00000531118 CENPWQ5EE01 88 aa4.78□□□□□ -1.64
CD44-232ENST00000531118 AMMECR1LQ6DCA0 310 aa4.78□□□□□ -1.64
CD44-232ENST00000531118 C9orf62Q8N4C0 152 aa4.78□□□□□ -1.64
CD44-232ENST00000531118 IGLV7-46A0A075B6I9 117 aa4.77□□□□□ -1.65
CD44-232ENST00000531118 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.77□□□□□ -1.65
CD44-232ENST00000531118 FAM168BA1KXE4 195 aa4.77□□□□□ -1.65
CD44-232ENST00000531118 IGKV2-29A2NJV5 120 aaPredicted RBP4.77□□□□□ -1.65
CD44-232ENST00000531118 RNASEKQ6P5S7 137 aaKnown RBP4.77□□□□□ -1.65
CD44-232ENST00000531118 RASL11AQ6T310 242 aa4.77□□□□□ -1.65
CD44-232ENST00000531118 ALKAL2Q6UX46 152 aa4.77□□□□□ -1.65
CD44-232ENST00000531118 FAM19A5Q7Z5A7 132 aaPredicted RBP4.77□□□□□ -1.65
CD44-232ENST00000531118 OR5A1Q8NGJ0 315 aa4.77□□□□□ -1.65
CD44-232ENST00000531118 CAMK2N2Q96S95 79 aa4.77□□□□□ -1.65
CD44-232ENST00000531118 USH2AO75445 5202 aa4.77□□□□□ -1.65
CD44-232ENST00000531118 F2Z2F3 143 aa4.76□□□□□ -1.65
CD44-232ENST00000531118 SSTP61278 116 aa4.76□□□□□ -1.65
CD44-232ENST00000531118 UBE2BP63146 152 aa4.76□□□□□ -1.65
CD44-232ENST00000531118 TYMSOSQ8TAI1 123 aa4.76□□□□□ -1.65
CD44-232ENST00000531118 TPPP3Q9BW30 176 aa4.76□□□□□ -1.65
CD44-232ENST00000531118 LINC00959A0A1B0GUT2 108 aa4.75□□□□□ -1.65
CD44-232ENST00000531118 RAB19A4D1S5 217 aa4.75□□□□□ -1.65
CD44-232ENST00000531118 TMEM250H0YL14 139 aa4.75□□□□□ -1.65
CD44-232ENST00000531118 M0QXV9 152 aa4.75□□□□□ -1.65
CD44-232ENST00000531118 ASB16-AS1Q495Z4 193 aa4.75□□□□□ -1.65
CD44-232ENST00000531118 C10orf25Q5T742 122 aa4.75□□□□□ -1.65
CD44-232ENST00000531118 OR2D3Q8NGH3 330 aa4.75□□□□□ -1.65
CD44-232ENST00000531118 EIF5A2Q9GZV4 153 aaKnown RBP4.75□□□□□ -1.65
CD44-232ENST00000531118 C19orf71A6NCJ1 209 aa4.74□□□□□ -1.65
CD44-232ENST00000531118 APCSP02743 223 aa4.74□□□□□ -1.65
CD44-232ENST00000531118 TRGC1P0CF51 173 aa4.74□□□□□ -1.65
CD44-232ENST00000531118 CFC1BP0CG36 223 aa4.74□□□□□ -1.65
CD44-232ENST00000531118 KRTAP5-3Q6L8H2 238 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms