RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 TMEM61Q8N0U2 210 aa10.37□□□□□ -0.75
USP48-213ENST00000529637 TRBV7-7A0A0K0K1E9 115 aa10.36□□□□□ -0.75
USP48-213ENST00000529637 MIAQ16674 131 aa10.36□□□□□ -0.75
USP48-213ENST00000529637 DEFB121Q5J5C9 76 aa10.36□□□□□ -0.75
USP48-213ENST00000529637 C18orf65Q6ZTR6 163 aa10.36□□□□□ -0.75
USP48-213ENST00000529637 C9orf85Q96MD7 179 aa10.36□□□□□ -0.75
USP48-213ENST00000529637 USP24Q9UPU5 2620 aa10.36□□□□□ -0.75
USP48-213ENST00000529637 JMJD1CQ15652 2540 aa10.35□□□□□ -0.75
USP48-213ENST00000529637 IGHV1-58A0A0C4DH39 117 aa10.35□□□□□ -0.75
USP48-213ENST00000529637 FAM240AA0A1B0GVK7 77 aa10.35□□□□□ -0.75
USP48-213ENST00000529637 MRPS36P82909 103 aaKnown RBP10.34□□□□□ -0.75
USP48-213ENST00000529637 MRPL23Q16540 153 aaKnown RBP10.34□□□□□ -0.75
USP48-213ENST00000529637 SPANXDQ9BXN6 97 aa10.34□□□□□ -0.75
USP48-213ENST00000529637 SPANXCQ9NY87 97 aa10.34□□□□□ -0.75
USP48-213ENST00000529637 CHD6Q8TD26 2715 aa10.34□□□□□ -0.75
USP48-213ENST00000529637 A0A0U1RRA0 63 aa10.34□□□□□ -0.75
USP48-213ENST00000529637 LINC00694P0DN24 101 aa10.34□□□□□ -0.75
USP48-213ENST00000529637 CITED2Q99967 270 aaPredicted RBP10.34□□□□□ -0.75
USP48-213ENST00000529637 KLK5Q9Y337 293 aaPredicted RBP10.34□□□□□ -0.75
USP48-213ENST00000529637 FBN2P35556 2912 aa10.34□□□□□ -0.75
USP48-213ENST00000529637 MTORP42345 2549 aa10.33□□□□□ -0.75
USP48-213ENST00000529637 VSIG2Q96IQ7 327 aa10.33□□□□□ -0.76
USP48-213ENST00000529637 LOC107984640A0A0U1RRK4 108 aa10.33□□□□□ -0.76
USP48-213ENST00000529637 TMEM101Q96IK0 257 aa10.33□□□□□ -0.76
USP48-213ENST00000529637 J3QLI3 93 aa10.32□□□□□ -0.76
USP48-213ENST00000529637 C11orf44Q8N8P7 122 aa10.32□□□□□ -0.76
USP48-213ENST00000529637 UBE2E2Q96LR5 201 aa10.32□□□□□ -0.76
USP48-213ENST00000529637 ZNF702PQ9H963 129 aa10.32□□□□□ -0.76
USP48-213ENST00000529637 DYNLRB2Q8TF09 96 aa10.31□□□□□ -0.76
USP48-213ENST00000529637 ZNF625Q96I27 306 aaPredicted RBP10.31□□□□□ -0.76
USP48-213ENST00000529637 ACANP16112 2415 aa10.31□□□□□ -0.76
USP48-213ENST00000529637 NF1P21359 2839 aa10.31□□□□□ -0.76
USP48-213ENST00000529637 Q8N2B8 174 aa10.31□□□□□ -0.76
USP48-213ENST00000529637 TMEM89A2RUT3 159 aa10.3□□□□□ -0.76
USP48-213ENST00000529637 KRTAP10-9P60411 292 aa10.3□□□□□ -0.76
USP48-213ENST00000529637 TMEM126AQ9H061 195 aa10.3□□□□□ -0.76
USP48-213ENST00000529637 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.3□□□□□ -0.76
USP48-213ENST00000529637 IGKV2-29A2NJV5 120 aaPredicted RBP10.3□□□□□ -0.76
USP48-213ENST00000529637 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.3□□□□□ -0.76
USP48-213ENST00000529637 IGHV3OR16-12A0A075B7B8 117 aa10.29□□□□□ -0.76
USP48-213ENST00000529637 RBMY1A1P0DJD3 496 aaKnown RBP10.29□□□□□ -0.76
USP48-213ENST00000529637 RBMY1CP0DJD4 496 aa10.29□□□□□ -0.76
USP48-213ENST00000529637 RBMY1FQ15415 496 aaKnown RBP10.29□□□□□ -0.76
USP48-213ENST00000529637 Q6YL49 198 aa10.29□□□□□ -0.76
USP48-213ENST00000529637 C9orf153Q5TBE3 101 aa10.29□□□□□ -0.76
USP48-213ENST00000529637 IGHV4-31P0DP07 118 aa10.29□□□□□ -0.76
USP48-213ENST00000529637 CDKN2A-AS1Q9UH64 79 aa10.28□□□□□ -0.76
USP48-213ENST00000529637 A0A1W2PRX2 142 aa10.28□□□□□ -0.76
USP48-213ENST00000529637 YAE1D1Q9NRH1 226 aa10.28□□□□□ -0.76
USP48-213ENST00000529637 SPANXA1Q9NS26 97 aa10.28□□□□□ -0.76
USP48-213ENST00000529637 PYGO1Q9Y3Y4 419 aa10.28□□□□□ -0.76
USP48-213ENST00000529637 DAZ2Q13117 558 aaKnown RBP10.27□□□□□ -0.77
USP48-213ENST00000529637 Q6ZSN1 163 aa10.27□□□□□ -0.77
USP48-213ENST00000529637 DAZ4Q86SG3 579 aaKnown RBP10.27□□□□□ -0.77
USP48-213ENST00000529637 DAZ3Q9NR90 486 aaKnown RBP10.27□□□□□ -0.77
USP48-213ENST00000529637 A0A096LNT2 108 aa10.27□□□□□ -0.77
USP48-213ENST00000529637 IGHV3-38A0A0C4DH36 116 aa10.27□□□□□ -0.77
USP48-213ENST00000529637 NDUFA7O95182 113 aa10.26□□□□□ -0.77
USP48-213ENST00000529637 C3orf22Q8N5N4 141 aa10.26□□□□□ -0.77
USP48-213ENST00000529637 Q96MF0 132 aa10.26□□□□□ -0.77
USP48-213ENST00000529637 C22orf24Q9Y442 160 aa10.26□□□□□ -0.77
USP48-213ENST00000529637 FLNAP21333 2647 aaKnown RBP10.26□□□□□ -0.77
USP48-213ENST00000529637 HERVK_113P63121 156 aa10.26□□□□□ -0.77
USP48-213ENST00000529637 TINCRA0A1B0GVN0 87 aa10.26□□□□□ -0.77
USP48-213ENST00000529637 UBE2D4Q9Y2X8 147 aa10.26□□□□□ -0.77
USP48-213ENST00000529637 SOSTDC1Q6X4U4 206 aa10.25□□□□□ -0.77
USP48-213ENST00000529637 CHCHD7Q9BUK0 85 aa10.25□□□□□ -0.77
USP48-213ENST00000529637 PEMTQ9UBM1 199 aa10.25□□□□□ -0.77
USP48-213ENST00000529637 COX6A2Q02221 97 aa10.25□□□□□ -0.77
USP48-213ENST00000529637 LINC00308Q8TCZ7 52 aa10.25□□□□□ -0.77
USP48-213ENST00000529637 LINC00467Q9BRT7 94 aa10.25□□□□□ -0.77
USP48-213ENST00000529637 ITPR3Q14573 2671 aa10.25□□□□□ -0.77
USP48-213ENST00000529637 FAM218AQ96MZ4 157 aa10.24□□□□□ -0.77
USP48-213ENST00000529637 XCL2Q9UBD3 114 aa10.24□□□□□ -0.77
USP48-213ENST00000529637 RBMY1BA6NDE4 496 aaKnown RBP10.24□□□□□ -0.77
USP48-213ENST00000529637 RBMY1EA6NEQ0 496 aaKnown RBP10.24□□□□□ -0.77
USP48-213ENST00000529637 RBMY1DP0C7P1 496 aaKnown RBP10.24□□□□□ -0.77
USP48-213ENST00000529637 BBC3Q96PG8 261 aaPredicted RBP10.24□□□□□ -0.77
USP48-213ENST00000529637 RS1O15537 224 aa10.24□□□□□ -0.77
USP48-213ENST00000529637 ZNF415Q09FC8 603 aa10.24□□□□□ -0.77
USP48-213ENST00000529637 IMUPQ9GZP8 106 aa10.24□□□□□ -0.77
USP48-213ENST00000529637 CYSTM1Q9H1C7 97 aa10.24□□□□□ -0.77
USP48-213ENST00000529637 COX7A2LO14548 114 aa10.23□□□□□ -0.77
USP48-213ENST00000529637 LINC00643Q86TS7 51 aa10.23□□□□□ -0.77
USP48-213ENST00000529637 Q9H8V8 135 aa10.23□□□□□ -0.77
USP48-213ENST00000529637 CSDC2Q9Y534 153 aaKnown RBP10.23□□□□□ -0.77
USP48-213ENST00000529637 BEAN1Q3B7T3 259 aa10.22□□□□□ -0.77
USP48-213ENST00000529637 ACYP1P07311 99 aa10.22□□□□□ -0.77
USP48-213ENST00000529637 BAALC-AS2P0C853 105 aa10.22□□□□□ -0.77
USP48-213ENST00000529637 TIRAPP58753 221 aa10.22□□□□□ -0.77
USP48-213ENST00000529637 UQCRQO14949 82 aa10.22□□□□□ -0.77
USP48-213ENST00000529637 DNAJC30Q96LL9 226 aa10.22□□□□□ -0.77
USP48-213ENST00000529637 MAP6D1Q9H9H5 199 aa10.22□□□□□ -0.77
USP48-213ENST00000529637 Q9HAA7 133 aa10.22□□□□□ -0.77
USP48-213ENST00000529637 DEFB113Q30KQ7 82 aa10.21□□□□□ -0.77
USP48-213ENST00000529637 LINC00526Q96FQ7 95 aa10.21□□□□□ -0.77
USP48-213ENST00000529637 DGAT2L7PQ6IED9 249 aa10.21□□□□□ -0.78
USP48-213ENST00000529637 NDUFA1O15239 70 aa10.2□□□□□ -0.78
USP48-213ENST00000529637 APCP25054 2843 aa10.2□□□□□ -0.78
USP48-213ENST00000529637 CR1P17927 2039 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms